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MOLECULAR MODELLING BY
VIRTUAL SCREENING METHOD
Presentation Topics
Bio Informatics Over view
Drug Design based on Bioinformatics
Virtual Screening method
Asthma- Case Study
Tools Used In Case Study
Methodology
Results
Conclusion
Bioinformatics- Overview
Over the past few decades, major advances in the
field of molecular biology, coupled with advances
in genomic technologies, have led to an explosive
growth in the biological information generated by
the scientific community. This deluge of genomic
information has, in turn, led to an absolute
requirement for computerized databases to store,
organize, and index the data and for specialized
tools to view and analyze the data.
BioInformatics-Definition
An interdisciplinary area at the intersection of
biological, computer, and information sciences
necessary to manage, process, and understand
large amounts of data, for instance from the
sequencing of the human genome, or from large
databases containing information about plants and
animals for use in discovering and developing new
drugs. It is the science of informatics as applied to
biological research.
Major Research Areas
1.Sequence analysis
2.Computational evolutionary biology
3. Measuring biodiversity
4.Gene expression analysis
5. Regulation analysis
6. Protein expression analysis
7. Analysis of mutations in cancer
8.Oligonucleotide microarrays,
9. Structure prediction
10. Modelling biological systems
11. High-throughput image analysis
Drug Design based on
Bioinformatics
The processes of designing a new drug using bioinformatics tools have
open a new area of research. However, computational techniques assist
one in searching drug target and in designing drug in silico, but it takes
long time and money. In order to design a new drug one need to follow
the following path.
Identify Target Disease
Study Interesting Compounds
Detect the Molecular Bases for Disease
Rational drug design techniques
Refinement of compounds
Quantitative Structure Activity Relationships (QSAR):
Solubility of Molecule
Drug Testing
Virtual Screening Method
Screening of molecules from different data bases
The data bases screened include LIGAND INFO which further constitute 7
database subsets & the molecules which are almost identical to original
ligands were selected &visualized in MERCURY (CCDC).
These ligands are saved as PDB format &are used for docking in ARGUS
LAB with the active site determinants.
The docked molecules which are having minimum of four inter molecular
bonds between the ligand & protein are viewed in PYMOL.These docked
molecules are considered as HIT molecules.
Mild Intermittent
Mild Persistent
Moderate Persistent.
Severe Persistent
CAUSES:
1.Environmental
2.Genetic
3.Gene-environment Interactions
before asthma after asthma
Treatment
VISUALISATION TOOLS
RASMOL
Swiss PDB Viewer
Pymol
Small Molecule Databases (LIGAND Info:)
Mercury
Marvin View
The data bases screened include LIGAND INFO which further constitute 7
database subsets & the molecules which are almost identical to original
ligands were selected &visualized in MERCURY (CCDC).
These ligands are saved as PDB format &are used for docking in ARGUS
LAB with the active site determinants of Tryptase.
The docked molecules which are having minimum of four inter molecular
bonds between the ligand & protein are viewed in PYMOL.These docked
molecules are considered as HIT molecules.
Based on this 6 HIT molecules are selected & are recommended for
clinical trials. If promising they can be released as Anti Asthmatic drugs.
Results
Molecule name Chemical formula Molecular Log p
weight(g/mol)
Lavendustin AOr C21H19NO6 381.38 3.605
RG 14355