Simpson's Diversity Index

Simpson's Diversity Index is a measure of diversity. In ecology, it is often used to quantify the biodiversity of a habitat. It takes into account the number of species present, as well as the abundance of each species. The Index of Diversity which AS/A2 level students in the UK need to understand can be found here. Before looking at Simpson's Diversity Index in more detail, it is important to understand the basic concepts outlined below.

Biological Diversity - the great variety of life

Biological diversity can be quantified in many different ways. The two main factors taken into account when measuring diversity are richness and evenness. Richness is a measure of the number of different kinds of organisms present in a particular area. For example, species richness is the number of different species present. However, diversity depends not only on richness, but also on evenness. Evenness compares the similarity of the population size of each of the species present. 1. Richness The number of species per sample is a measure of richness. The more species present in a sample, the 'richer' the sample. Species richness as a measure on its own takes no account of the number of individuals of each

species present. It gives as much weight to those species which have very few individuals as to those which have many individuals. Thus, one daisy has as much influence on the richness of an area as 1000 buttercups. 2. Evenness Evenness is a measure of the relative abundance of the different species making up the richness of an area. To give an example, we might have sampled two different fields for wildflowers. The sample from the first field consists of 300 daisies, 335 dandelions and 365 buttercups. The sample from the second field comprises 20 daisies, 49 dandelions and 931 buttercups (see the table below). Both samples have the same richness (3 species) and the same total number of individuals (1000). However, the first sample has more evenness than the second. This is because the total number of individuals in the sample is quite evenly distributed between the three species. In the second sample, most of the individuals are buttercups, with only a few daisies and dandelions present. Sample 2 is therefore considered to be less diverse than sample 1. Numbers of individuals Sample 1 Sample 2 300 20 335 49 365 931 1000 1000

Flower Species Daisy Dandelion Buttercup Total

A community dominated by one or two species is considered to be less diverse than one in which several different species have a similar abundance.
As species richness and evenness increase, so diversity increases. Simpson's Diversity Index is a measure of diversity which takes into account both richness and evenness. Simpson's Diversity Indices The term 'Simpson's Diversity Index' can actually refer to any one of 3 closely related indices. Simpson's Index (D) measures the probability that two individuals randomly selected from a sample will belong to the same species (or some category other than species). There are two versions of the formula for calculating D. Either is acceptable, but be consistent.

D=

(n / N)2

n = the total number of organisms of a particular species N = the total number of organisms of all species The value of D ranges between 0 and 1 With this index, 0 represents infinite diversity and 1, no diversity. That is, the bigger the value of D, the lower the diversity. This is neither intuitive nor logical, so to get over this problem, D is often subtracted from 1 to give: Simpson's Index of Diversity 1 - D The value of this index also ranges between 0 and 1, but now, the greater the value, the greater the sample diversity. This makes more sense. In this case, the index represents the probability that two individuals randomly selected from a sample will belong to different species. Another way of overcoming the problem of the counter-intuitive nature of Simpson's Index is to take the reciprocal of the Index: Simpson's Reciprocal Index 1 / D The value of this index starts with 1 as the lowest possible figure. This figure would represent a community containing only one species. The higher the value, the greater the diversity. The maximum value is the number of species (or other category being used) in the sample. For example if there are five species in the sample, then the maximum value is 5. The name 'Simpson's Diversity Index' is often very loosely applied and all three related indices described above (Simpson's Index, Simpson's Index of Diversity and Simpson's Reciprocal Index) have been quoted under this blanket term, depending on author. It is therefore important to ascertain which index has actually been used in any comparative studies of diversity.

To calculate Simpson's Index for a particular area, the area must first be sampled. The number of individuals of each species present in the samples must be noted. (This can be easier said than done! more here) For example, the diversity of the ground flora in a woodland, might be tested by sampling random quadrats. The number of plant species within each quadrat, as well as the number of individuals of each species is noted. There is no necessity to be able to identify all the species, provided they can be distinguished from each other.

As an example, let us work out the value of D for a single quadrat sample of ground vegetation in a woodland. Of course, sampling only one quadrat would not give you a reliable estimate of the diversity of the ground flora in the wood. Several samples would have to be taken and the data pooled to give a better estimate of overall diversity. How many samples? Species Woodrush Holly (seedlings) Bramble Yorkshire Fog Sedge Total (N) Number (n) 2 8 1 1 3 15 n(n-1) 2 56 0 0 6 64

Putting the figures into the formula for Simpson's Index

D = 0.3 (Simpson's Index)

Then:

Simpson's Index of Diversity 1 - D = 0.7 Simpson's Reciprocal Index 1 / D = 3.3

These 3 different values all represent the same biodiversity. It is therefore important to ascertain which index has actually been used in any comparative studies of diversity. A value of Simpson's Index of 0.7, is not the same as a value of 0.7 for Simpson's Index of Diversity. Simpson's Index gives more weight to the more abundant species in a sample. The addition of rare species to a sample causes only small changes in the value of D.

When is an individual not an individual?

Animals and plants which reproduce asexually can cause terrible problems for the biological sampler! Is a single sprig of moss an individual, or is the whole patch one individual? In this case the best bet may be to assume that patches physically isolated from each other are separate individuals, whereas those which are contiguous may well all be the same individual. (This may not be true in all cases, but one has to make some assumptions in order to sample. The assumption should be included in any writeup.)

Grasses which reproduce by sending out runners and stolons can cover large areas with what looks like many different individuals of the same species, although in fact they are all the same plant. New plants will often arise where the runners or stolons touch the ground and root. If the runners become detached or die off, the individual 'clone' plants remain as what appears to be different individuals, although they are of the same genetic make-up. The collection of 'clones' of identical genetic makeup is called a 'genet'. The apparent 'individuals' of the genet are called 'ramets'. The genets of some plant species may be hundreds, even thousands of years old! If you are faced with the problem of trying to determine numbers of individuals of different grass species in a grassland, the best bet is to try and follow runners or stolons so that you can identify all the seemingly separate plants which belong to the same individual. As they are all interconnected, they should be treated as one individual. Where connecting runners and stolons have been lost, then there is no way of knowing whether the plants are different genetic individuals or ramets. They therefore have to be treated as separate plants. In any case, as the interconnections have been lost, they are to all intents and purposes different individuals, even if their genetic make-up happens to be the same as the plant next door.

Many wetland plants also spread by vegetative means. Pond Iris is a good example. A single plant may eventually cover a region up to 20m in radius.

Aphids present a particularly interesting conundrum. During the summer months, females reproduce parthenogenetically, without the benefit of males. Large numbers of individuals are produced which are therefore of exactly the same genetic makeup. In this case the genet may consist of widely separated individual ramets.

ECOLOGICAL SAMPLING METHODS cont'd

Many ecological surveys are carried out over extended periods of time, with sampling taking place at regular intervals within a particular habitat. In such cases, it is necessary to estimate the number of samples which should be taken at each sampling period. The minimum number of samples which should be taken to be truly representative of a particular habitat, can be ascertained by graphing the number of species recorded, as a function of the number of samples examined. The graph (left) is an example of this, obtained from a survey of a heathland area. The first sample yielded 9 different species. With the second sample, a total of 13 species had been found. After 5 samples had been examined, the total species number had risen to 21. By the time 7 samples had been taken, no more new species were being found. At this point, further sampling is becoming unnecessary. This graph therefore shows us that for this particular habitat, we need to sample at least 7 samples in each sampling period. Further sampling will merely waste time and duplicate results. 2. SYSTEMATIC SAMPLING a) Line Transect Method b) Belt Transect Method Systematic sampling is when samples are taken at fixed intervals, usually along a line. This normally involves doing transects, where a sampling line is set up across areas where there are clear environmental gradients. For example you might use a transect to show the changes of plant species as you moved from grassland into woodland, or to investigate the effect on species composition of a pollutant radiating out from a particular source .

Line Transect Method A transect line can be made using a nylon rope marked and numbered at 0.5m, or 1m intervals, all the way along its length. This is laid across the area you wish to study. The position of the transect line is very important and it depends on the direction of the environmental gradient you wish to study. It should be thought about carefully before it is placed. You may otherwise end up without clear results because the line has been wrongly placed. For example, if the source of the pollutant was wrongly identified in the example given above, it is likely that the transect line would be laid in the wrong area and the results would be very confusing. Time is usually money, so it is worth while thinking about it before starting. A line transect is carried out by unrolling the transect line along the gradient identified. The species touching the line may be recorded along the whole length of the line (continuous sampling). Alternatively, the presence, or absence of species at each marked point is recorded (systematic sampling). If the slope along the transect line is measured as well, the results can then be inserted onto this profile.
More information on line transects Wetland Line Transect Diagrams Wetland Plant Distribution Diagrams

ECOLOGICAL SAMPLING METHODS cont'd

Belt Transect Method This is similar to the line transect method but gives information on abundance as well as presence, or absence of species. It may be considered as a widening of the line transect to form a continuous belt, or series of quadrats. In this method, the transect line is laid out across the area to be surveyed and a quadrat is placed on the first marked point on the line. The plants and/or animals inside the quadrat are then identified and their abundance estimated. Animals can be counted (if they will sit still!), or collected, while it is usual to estimate the percentage cover of plant species. Cover is the area of the quadrat occupied by the above-ground parts of a species when viewed from above. The canopies of the plants inside the quadrat will often overlap each other, so the total percentage cover of plants in a single quadrat will frequently add up to more than 100%. Quadrats are sampled all the way down the transect line, at each marked point on the line, or at some other predetermined interval (or even randomly) if time is short. It is important that the same person should do the estimations of cover in each quadrat, because the estimation is likely to vary from person to person. If different people estimate percentage cover in different quadrats, then an element of personal variation is introduced which will lead to less accurate results. The height of plants in the quadrat can be recorded and the biomass of plants can also be measured by harvesting all the plants inside the quadrat and then weighing either fresh, or

dry weight in the laboratory. This is obviously a very destructive method of sampling which could not be used too often in the same place. Sampling should always be as least destructive as possible and you should try not to trample an area too much when carrying out your survey.. An example of the type of results that can be obtained from a belt transect survey is shown below.

This figure illustrates the distribution and abundance of cherry seedlings along a transect line. The parent cherry trees were adjacent to section number 9. The gradient of distribution apparent in the figure is a result of the dispersal of seeds outwards from this point.

. For more illustrations of belt transect data, visit the wetland survey pages. Click here

3. STRATIFIED SAMPLING Stratified sampling is used to take into account different areas (or strata) which are identified within the main body of a habitat. These strata are sampled separately from the main part of the habitat. The name 'stratified sampling' comes from the term 'strata' (plural) or stratum (singular). For ease of understanding, the term 'unit' will be used in the following explanation, rather than stratum. Individual habitats are rarely uniform throughout their extent. There are often smaller identifiable areas within a habitat which are substantially different from the main part of the habitat. For example, scrub patches within a heathland area, or areas of bracken in a grassland. One of the problems with random sampling is that random samples may not cover all areas of a habitat equally. To continue with the example of bracken patches in a grassland, if the area was random sampled, it is possible that none of the samples might fall within the bracken patches. The results would then not show any bracken in the habitat. Clearly this would not be an accurate reflection of the habitat. In this sort of situation, stratified random sampling would be used to avoid missing out on important areas of the habitat. This simply means identifying the bracken as a different unit within the habitat and then sampling it separately from the main part of the habitat. While the bracken area clearly needs to be taken into account, it is nevertheless important to avoid

overemphasising its significance within the habitat as a whole. Its importance is kept in context by locating a proportional number of samples directly within the bracken unit. The proportion of samples taken within the unit is determined by the area of the unit in relation to the overall area of the habitat. For example, say the grassland area is 200 m2 overall, with the bracken patch occupying 50 m2 of this total area. The bracken therefore accounts for 25% of the total grassland area. Say it has been decided that a total of 12 samples need to be taken in order to accurately reflect the composition of the whole habitat. Then 3 of those samples (one quarter, or 25%) would be located within the bracken unit and 9 (three quarters, or 75%) in the general grassland area. There is a standard formula for calculating the number of samples to be placed in each unit. This is:

For example, in the illustration given above this would be:

Which type of sampling to use?

Sample of raw data and extracted summary of raw data.

ECOLOGICAL SAMPLING METHODS

Which Method to Use?

Stratified Sampling?

Stratified sampling is simply the process of identifying areas within an overall habitat, which may be very different from each other and which need to be sampled separately. Each individual area separately sampled within the overall habitat is then called a stratum. The habitat may be fairly uniform, in which case, this is unnecessary. More here

Random Sampling?

Systematic Sampling (Transects)?

This is used where the habitat being sampled is fairly uniform.

Example: The Woodland Project

To remove observer bias in the selection of samples. Where statistical tests are to be used which require randomly collected data. Where a large area needs to be covered quickly. If time is very limited.

To show zonation of species along some environmental gradient. e.g. down a sea shore, across a woodland edge. Example:
The Wetland Survey

Where there is some kind of continuous variation along a line, e.g. across the Centre's heathland strips. To sample linear habitats, e.g. a roadside verge.

How many samples?

Where physical conditions demand it, e.g. sampling a vertical rock face, using a rope to climb it.

Comparison of results obtained using random & belt transect methods

Systematic Sampling - Line or Belt?

Line Transect?

Belt Transect?

Where time is limited. A line transect can be carried out much quicker than a belt transect. To visually illustrate how species change along the line (a transect diagram).
Keys can be chosen to represent individual species. Vegetation height can be drawn in choosing an appropriate scale. The slope of the line can also be measured when carrying out the transect and incorporated into the transect diagram.

A belt transect will supply more data than a line transect. It will give data on the abundance of individual species at different points along the line, as well as on their range. As well as showing species ranges along the line, a belt transect will also allow bar charts to be constructed showing how the abundance of each individual species changes within its range.
Example

To show species ranges along the line.

This will generally show only where the species occurs, not how much of it is present. Example

Belt transect data will allow the relative dominance of species along the line to be determined.
Example

What interval should be used? Transects can either be continuous with the whole length of the line being sampled, or samples can be taken at particular points along the line. For example, every metre, or every other metre. For both line and belt transects, the interval at which samples are taken will depend on the individual habitat, as well as on the time and effort which can be allocated to the survey.

Too great an interval may mean that many species actually present are not

noted, as well as obscuring zonation patterns for lack of observations. More

here

Too small an interval can make the sampling extraordinarily time consuming, as well as yielding more data than is needed. This can cause problems with presenting the data (line transects) as well as sometimes making it harder to see patterns of zonation because of too much 'clutter'.
More here

It is important to make sure that the interval chosen does not happen to coincide with some regularly occurring feature of the habitat. For example, if sampling an old field with ridge and furrow systems still obvious, the interval should not be such that all samples are taken on a ridge, or all the samples in a furrow. (Unless, of course, the purpose of the survey is to identify any differences between ridges and furrows!)

The ideal interval will be chosen by balancing the complexity of the individual habitat with the purpose of the survey and the resources available to carry it out.