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Topics Included
• TCA Cycle (Citric Acid Cycle/ Krebs Cycle) • High Energy Compounds
• Shuttle Mechanisms • Electron Transport Chain
• Inhibitors of Electron Transport System • Inhibitors of Electron Transport Chain
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• Reversible reaction
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Isocitrate Dehydrogenase
• Isocitrate undergoes dehydrogenation catalyzed
by isocitrate dehydrogenase to form, initially,
oxalosuccinate
• Oxalosuccinate is decarboxylation to α –ketoglutarate
(5C)
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400 |
Self Assessment and Review of Biochemistry
• GTP is generated in Gluconeogenic tissues like Liver • The enzyme contains FAD and iron–sulfur (Fe:S) protein
and Kidney • The enzyme directly reduces ubiquinone in the
• Substrate Level Phosphorylation. electron transport chain
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• Only enzyme in TCA cycle attached to Inner Concept of regulation of TCA cycle
mitochondrial Membrane • High energy states inhibit TCA Cycle and vice versa
• All other enzymes are in the mitochondrial matrix • High ATP/ADP ratio and High NADH/NAD+ ratio are inhibitors of
TCA Cycle.
• FADH2 is formed
• High ADP and High NAD+ are activators of TCA Cycle
• Succinate Dehydrogenase is competitively inhibited • Products of the pathway inhibit the regulatory enzymes
by Malonate.Q
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enzymes
• Catalyzes the addition of water across the double
bond of fumarate, yielding malate • Long Chain Acyl CoA and ATP inhibit Citrate
• Fumarase is a Lyase. Synthase
• Isocitrate Dehydrogenase is inhibited by ATP and
Malate Dehydrogenase NADH
• Final step in TCA Cycle • Succinate Dehydrogenase is inhibited by Oxaloacetate
• Malate is converted to Oxaloacetate • In Muscle, the dehydrogenases of TCA Cycle are
• Oxalo acetate is regenerated activated by Ca2+, which increases during muscle
• 1 NADH generated contraction
• Oxaloacetate regenerated, hence Oxaloacetate has a • Mitochondrial Isocitrate Dehydrogenase is activated
catalytic role like Ornithine in Urea Cycle. by ADP
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Self Assessment and Review of Biochemistry
to the respiratory chain via a flavoprotein (FAD) rather than NAD, only
At the level of Succinyl CoA (4C) 1.5 mol rather than 2.5 mol of ATP are formed per atom of oxygen
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Malate Shuttle
Malate shuttle system is of more universal utility. Used
to transport NADH from Cytosol to Mitochondria.
SHUTTLE SYSTEMS
• NADH cannot penetrate the mitochondrial
membrane, but it is produced continuously in the
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• ATP emerging from the adenine nucleotide trans- brane, Creatine Kinase generate extramitochondrial
porter to intermembrane space ATP.
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Pyruvate/Lactate -0.19
Remember this table is important for national board
Oxaloacetate/Malate -0.19
pattern of exams. It is important to learn the order in
Contd... which they are arranged, not the value of redox potential.
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Self Assessment and Review of Biochemistry
Site: In the Inner Mitochondrial Membrane ‒ The final electron acceptor of ETC is oxygen.
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OXIDATIVE PHOSPHORYLATION
The flow of electrons through the respiratory chain
generates ATP by the process of oxidative phosphorylation.
Oxidation coupled with Phosphorylation.
The theory behind the oxidative Phosphorylation is the
Chemiosmotic theory.
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Pumps 4 H+ to Intermembrane Space (PGI Nov 09 May 10) across the inner mitochondrial membrane
• Complex IV Cytochrome c Oxidase • The proton motive forceQ caused by the electrochemi-
‒ Contain Cyt a and a3 (now known as Heme a a3) cal potential difference (negative on the matrix side)
and Copper A and Copper B centre drives the mechanism of ATP synthesis.
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mitochondrial membrane.
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• This causes the production of ATP in the F1 • The theory behind the ATP production in the β
complex subunit of F1 Subcomplex
• β subunit of F1 Complex is called Catalytic Subunit. • Proposed by Paul Boyer
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Self Assessment and Review of Biochemistry
• Thyroxine
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Inhibitor of Complex II
• Represents the number of ATP molecules produced
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• TTFA (Tri enoyl TriFluoroAcetone) a Fe2+ Chelating in terms of reducing equivalents oxidized
agent
• No of inorganic Phosphates utilized for ATP
• Carboxin production for every atom of oxygen consumed
• Malonate, a competitive inhibitor of Succinate • For NADH - 2.5
Dehydrogenase.
• For FADH2 -1.5.
Between Cyt b and Cyt c [At Complex III]
High Energy CompoundsQ
• Antimycin A
• Compounds which yield energy of atleast 7 kcal/m
• British Antilevisite [Dimercaprol]
on hydrolysis
Inhibitor at Cytochrome c Oxidase [Complex IV] • Compounds whose free energy of hydrolysis more
• CO than that of ATP is called High energy phosphates
• Cyanide • Compounds whose free energy of hydrolysis less
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REVIEW QUESTIONS
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Self Assessment and Review of Biochemistry
glutamine (catalyzed by glutamine synthetase), leading inhibiting the transporter of ADP into and ATP out
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Reversible reaction
10. The electron flow in cytochrome C oxidase can be
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a. Apoptosis
8. High energy phosphate is not produced in:
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b. Electron transport
a. TCA cycle c. Krebs cycle
b. Hexose Mono Phosphate pathway d. Glycolysis
c. Glycolysis Ans. a. Apoptosis. (Ref: Harper 30/e p127-130)
d. Beta Oxidation of Fatty Acid Mitochondrial Cytochrome c is a mobile electron carrier
Ans. b. HMP Pathway. in Electron Transport Complex. This also mediates
Pathways which do not synthesize ATP are Apoptosis.
• HMP Pathway
• Rapaport Leubering Cycle 12. High energy compounds is/are: (PGI May 2012)
• Uronic acid pathway a. ATP
• Alpha oxidation of Fatty acid b. Creatine Phosphate
c. Glucose 1 Phosphate
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b. Fat
b. Cytochrome-C Oxidase
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c. Protein
c. Cytochrome C–Q oxidoreductase
d. Isocitrate Dehydrogenase d. Alcohol
e. Succinate Q Reductase Ans. b. Fat.
Ans. a. NADH-Q Oxidoreductase, c. Cytochrome C–Q Respiratory Quotient
oxidoreductase. (Ref: Harper 29/e p130) Measurement of the ratio of the volume of carbon dioxide
• Complex I and III pumps 4 H+ produced: volume of oxygen consumed
• Complex II pumps no protons (Respiratory Quotient, RQ) is an indication of the
• Complex IV pumps 2 H+. mixture of metabolic fuels being oxidized.
15. The specialized mammalian tissue/organ in RQ (CO2
which fuel oxidation serves not to produce ATP Metabolic Energy Yield produced/O2 Energy
fuel (kJ/g) consumed (kJ)/L O2
but to generate heat is: (AI 2006)
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Carbohydrate 16 1.00 20
a. Adrenal gland
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Protein 17 0.81 20
b. Skeletal music
c. Brown adipose tissue Fat 37 0.71 20
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Self Assessment and Review of Biochemistry
19. Phenobarbitone inhibits which complex of ETC: Dinitrophenol is an uncoupler of Oxidative Phospho-
(NBE pattern Q) rylation. So no ATP synthesis but electron transfer and
a. Complex I oxidation of reducing equivalents takes place.
b. Complex II
21. Mechanism of Cyanide poisoning: (NBE pattern Q)
c. Complex III a. Inhibition of Cytochrome Oxidase
d. Complex IV b. Inhibition of Carbonic Anhydrase
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d. Inhibits electron transport chain but not ATP Ans. b. Oxygen. (Ref: Harper 30/e p133)
synthesis • Electrons are transferred in the ascending order of
Ans. c. Inhibit ATP synthesis and but not electron redox potential, the final oxygen electron acceptor
transport chain. is oxygen.
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