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Copyright © 1971 American Society for Microbiology Printed in U.S.A.
The antibacterial activity of D-cycloserine (D-4- tiple inhibition sites associated with D-alanine:
amino-3-isoxazolidone) has been correlated with D-alanine ligase (ADP) and alanine racemase.
the inhibition of enzymes necessary for peptido- In Escherichia coli, the transport system for
glycan synthesis (for a review, see reference 6). In alanine has also been implicated in the accumula-
the case of Streptococcus faecalis, it has been tion of D-cycloserine (3, 11). In an analysis of
proposed that the primary site of D-cycloserine alanine transport in E. coli, Wargel et al. (11)
action at low concentrations is at the donor site proposed that the transport systems for D-alanine
of D-alanine: D-alanine ligase (ADP) and that the and glycine are related and separate from that
acceptor site of this enzyme and that of alanine involved in the accumulation of L-alanine and
racemase are secondary sites of action (7). In an that the D-alanine-glycine system is responsible
analysis of D-cycloserine-resistant mutants from for the transport of D-cycloserine.
Streptococcus strain Challis, the transport As a result of the importance of the alanine
system(s) for alanine was implicated as an inte- transport system(s) to D-cycloserine action and
gral aspect of both D-cycloserine action and the the acquisition of resistance to this antibiotic,
acquisition of resistance to this antibiotic (9). studies were undertaken of D-cycloserine-resistant
Thus, a single mutation that results in a reduction mutants in an attempt to dissect the alanine
of D-cycloserine transport will "protect" the mul- transport system in E. coli. The results described
' Presented in part at the 69th Annual Meeting of the Amer- in this paper provide additional evidence for a D-
ican Society for Microbiology, Miami, Florida, 3-10 May, alanine-glycine transport system that is separate
1969. Taken from a thesis submitted by R. J. Wargel in partial from the system for L-alanine. The primary mu-
fulfillment of the requirements for the Ph.D. degree from tation responsible for D-cycloserine resistance is
Northwestern University.
2 Present address: Kraftco Corp., Research and Develop- characterized by the loss of the high-affinity line
ment, Glenview, 111. segment of the D-alanine-glycine transport system
I
National Science Foundation Summer Research Fellow, in the Lineweaver-Burk plot. This mutation is
1969. linked to the met, locus of the E. coli chromo-
'Supported by Public Health Service Research Career De-
velopment Award l-K3-AI-6950 from the National Institute of some. In addition, an estimate of the amount of
Allergy and Infectious Diseases. overlap between the D-alanine-glycine system and
1028
VOL. 105, 1971 MECHANISM OF D-CYCLOSERINE ACTION 1029
40
I 0 30
(0
w w
-J
0
21." 120
I0
10
2 3 12 3 4 5
MINUTES MINUTES
FIG. 1. Accumulation of L-alanine, D-alanine, and glycine by cyct (O, A,A) and cycrl (0, 0, A), A, and by
cycr2 (-K, A) and cyc'" (0, 0, A), B. The concentrations are: L-[14C]alanine (0, 0), 2.6 x 10-5 M; D-[14C]-
alanine (U, 0), 2.0 x 10-S M; [14C]glycine (A, A), 2.5 x 10-5 M. The accumulation of these amino acids was
measured with a wash procedure at 25 C described in the Materials and Methods.
transport of L-alanine. In the case of D-alanine and glycine. The Km values are listed in Table 3.
and glycine, the double reciprocal plots are char- The accumulation of D-alanine and glycine by
acterized by two intersecting line segments (11). CyCrl is characterized by a single line segment
These lines are referred to as the "high"- and with a Michaelis-Menten constant of 1.4 x l0-4
"low"-affinity segments. This designation is not M. This value of Km is similar to the value of the
intended to imply the presence of two compo- low-affinity segment mediating D-alanine (Km =
nents with a particular affinity but serves only to 8.2 x l0-5 M) and glycine (Km = 9.1 X 10-5 M)
characterize the transport system. uptake by cyc5. Thus, the first-step mutation is
Lineweaver-Burk plots of the accumulation of characterized by the loss of the high-affinity D-
L-alanine, D-alanine, and glycine by cyc8, cycri, alanine-glycine segment in the Lineweaver-Burk
cyc , and cycr3 are shown in Fig. 3A, B, C, and plot (Fig. 3B).
D. The double reciprocal plots for each organism The second-step mutation is more difficult to
are plotted on the same scale for ease of compar- characterize. Our observations indicate that this
ison. The insert in Fig. 3A emphasizes on an en- mutation has resulted in the loss of the saturable
larged scale the two line segments for D-alanine low-affinity line segment for D-alanine and gly-
1032 WARGEL, SHADUR, AND NEUHAUS J. BACTERIOL.
TABLE 3. Summary of values of Kma and cycr3, respectively. These values are lower
K. (M)
than the Vmax (5.2 nmoles/mg) for L-alanine up-
Strain take by the parent.
L-Alanine D-Alanine Glycine The double reciprocal plots for the rate of ac-
cyc* ............ 5.7 x 10-' 2.5 x 10-i 2.5 x 1O-5 cumulation of D-alanine by E. coli W and D-5 are
8.2 x 10-a 9.1 x 10-a shown in Fig. 5. These results indicate that D-5 is
CyCr. ............ 7.1 x 10-_ similar to cycr2 and cyc"'. This mutant is charac-
1--a
14.0 x 10-514.0 x terized by the loss of the high- and low-affinity
cycr2 ............ 7.1 x 10-a line segments for D-alanine and glycine accumu-
lation. The Michaelis-Menten constant (9.1 x
cycrs ............ 7.1 x 10-a 10-5 M) for L-alanine uptake is identical for the
9.1 x 10-a 2.6 x 10-a 1.7 x 10-a
E. coli W ........ mutant and the parent.
8.7 x 10-a 9.9 x 10-5 In an effort to correlate the resistance to D-Cy-
D-5 ............ 9.1 x 10-a _ closerine with a defective transport system for the
antibiotic, the ability of the D-cycloserine-re-
sistant mutants cycrl and D-5 to accumulate D-
a
Values for Km for the accumulation of L- and D- cycloserine was established. As illustrated in Fig.
alanine and glycine were established from the Line- 6 (A, B), the ability of these mutants to accumu-
weaver-Burk plots in Fig. 3A, B, C, D. late D-cycloserine was impaired. ln the case of
cine. The lack of a saturable component is based cycri, it can be concluded that a significant por-
on an extrapolation that yields an infinite Vmax tion of the ability to transport D-cycloserine was
and Km, whereas the presence of a saturable lost as a consequence of the mutation that results
component is based on a finite Vmax. In Fig. 4, in the loss of the high-affinity line segment char-
the sequential loss of the high and low-affinity acteristic of the D-alanine-glycine transport
line segments of D-alanine transport is illustrated. system.
The Michaelis-Menten constant for L-alanine Growth of E. coli W and mutant (D-5) on L-
(Km = 7.1 x 10-a M) is the same for each mutant and D-alaflllUe. The conclusions drawn from the
and similar to the value obtained for the parent kinetic data may be tested in growth experiments
(5.7 x 10-a M). The Vmax for L-alanine is 2.4, 2.1, by using either D- or L-alanine as the carbon
and 2.5 nmoles per mg per 30 sec for cycr', cyC 2, source. As illustrated in Fig. 7A, E. coli W grew
equally well on either L- or D-alanine. In contrast,
mutant D-5 did not grow on D-alanine but grew
on L-alanine at approximately the same rate as
O 2 4 6 8 10 12
104/[D-ALANINE]
FIG. 5. Lineweaver-Burk plots of the uptake oJ D-
2 4 6 8 10 [14CJalanine by E. coli W and D-S. The accumulation of
IO/[D-ALANINE] labeled D-alanine was measured with the assay de-
scribed in Fig. I by using a buffer wash at 4 C. As
FIG. 4. Comparison of Lineweaver-Burk plots of D- shown previously (11), the temperature of the buffer
alanine uptake in cyc', cycrl, cyc", and cycra. The data wash affects Vmax but does not affect Km. All velocities
are taken from a separate set of experiments than those have been corrected for the uptake of D-["4C]alanine
presented in Fig. 3. by azide-treated cells.
VOL. 105, 1971 MECHANISM OF D-CYCLOSERINE ACTION 1033
F-
z
104/[D-CYaOSERINE] I I I I I
0.60
B
0.20
0.10 j L-ALANINE
0.04 - D-ALANINE
0.02
I I
2 4 6 10 12 14
104/[D-CYCLOSERINE] HOURS
FIG. 6. Lineweaver-Burk plots of the uptake of D- FIG. 7. Growth of E. coli W (A) and D-5 (B) on ei-
[14CJcycloserine in E. coli W and D-5 (A) and cyc8 and ther glucose, L-alanine, or D-alanine. The growth me-
cycrl (B). The rate of accumulation was measured by dium contained the components described in the Mate-
the procedure described in Materials and Methods. The rials and Methods with either 0.1 % glucose (0), 0.1%
velocities established for A were performed with a wash D-alanine (A), or 0.1% L-alanine (U). Growth was
at 25 C and those in B were performed with a wash at 4 monitored by measuring the turbidity at 650 nm at 37
C (see legend to Fig. 5). C.
the parent (Fig. 7B). Thus, the growth experi- of D-cycloserine resistance in these mutants. In
ments with D-5 also suggest that the transport the case of the mutants of Streptococcus strain
system for D-alanine is defective and that the Challis that are resistant and have elevated en-
ability to transport L-alanine is essentially intact. zyme levels, no differences in the target enzymes
Since glycine cannot substitute as the sole carbon could be demonstrated (9).
source, an analogous experiment with this amino
acid was not possible. DISCUSSION
Alanine racemase and D-alanine: D-alanine li- Wargel et al. (11) suggested that the accumula-
gase (ADP). Acquisition of resistance to D-Cy- tion of D-alanine and the accumulation glycine in
closerine may also result from elevated levels of E. coli are related and appear to be separate from
the sensitive target enzymes alanine racemase (EC the transport of L-alanine. The data presented in
5. 1. 1. 1) and D-alanine: D-alanine ligase (ADP) this paper provide additional and more conclusive
(EC 6.3.2.4; reference 9). As shown in Table 4, evidence in support of this suggestion and estab-
the specific activities of these enzymes were es- lish the amount of overlap between the two sys-
sentially unchanged for each mutant. Thus, the tems. A single mutation (cycrl) as well as the
absence of increased concentrations of the target multiple mutations (cyc", cyc", and D-5) mark-
enzymes in these mutants eliminated this mecha- edly affect the transport of D-alanine and glycine,
nism for the acquisition of resistance to D-cyclo- whereas the transport of L-alanine is decreased to
serine. Modification of the target enzyme, another oply a small extent.
possible mechanism of D-cycloserine resistance, In the first-step mutant, cycrl, the high-affinity
has not been eliminated as one of the mechanisms line segment for D-alanine and glycine transport
1034 WARGEL, SHADUR, AND NEUHAUS J. BACTERIOL..
TABLE 4. Specijic activities of D-alanine: D-alanine growth on L-alanine as the sole carbon source
ligase (ADP) and alanine racemase in extracts of cycs, may be due to a partial loss of the total L-alanine
cycrl, cycr2, and Cycr3 a transport activity.
Strain Eo-Alanine: E-alanine ligase (ADP) The decreased transport of L-alanine in these
mutants may reflect the amount of overlap be-
cycs .......... ......... 309" 57
tween the systems, i.e., the amount of L-alanine
cycrl ........... ....... 318 51
CyCr ........... ....... 309 50 that is transported over the D-alanine-glycine
cycr .................. 364 48 system. The results with mutants D-5 and Cycr,
indicate that 25 and 35% of the L-alanine trans-
a
One-liter cultures of these strains were grown to an port activity is lost in these mutants, respectively.
optical density of 0.40 in minimal medium containing In previous studies (11), it was observed that D-
0.4% glucose. The cells were harvested and washed two alanine, glycine, and D-cycloserine inhibit from
times with 0.02 M tris(hydroxymethyl)aminomethane 25 to 35% of the L-alanine accumulation by cycs.
(Tris)-hydrochloride, pH 7.8. The cells (1.4 g) sus- The inhibition of L-alanine uptake by D-alanine,
pended in 10 ml of 0.02 M Tris-hydrochloride, pH 7.8, glycine, and D-cycloserine may represent the
containing two drops of antifoam were disrupted with
glass beads (9 g) in a mechanical cell homogenizer amount of L-alanine transported by the D-
(Braun model MSK) at 4,000 cycles/min for 5 min. alanine-glycine systems in cycs. Thus, the results
The suspension was centrifuged at 100,000 x g for I hr. with the D-cycloserine-resistant mutants and the
Samples of the supernatant fraction were assayed for inhibitor studies (11) suggest that 25 to 35% of
alanine racemase (4) and D-alanine: D-alanine ligase the L-alanine accumulated at a concentration of
(ADP) (9). 2.5 x 10-5 M is transported by the D-alanine-gly-
t Values expressed as nanomoles per hour per milli- cine system(s).
gram of protein. Schwartz et al. (10) observed that a D-serine-
has been lost. The ability to accumulate D-alanine resistant mutant was defective for transport ot D-
and glycine has been further reduced by the serine, glycine, and L-alanine. From their results,
second mutation. Lineweaver-Burk plots of D- it was concluded that these amino acids are on a
alanine and glycine uptake by cycr2 and cyc" in- common transport system. However, examina-
dicate that the low-affinity line segment has been tion of the data reveals that the ability to trans-
lost as a result of the second-step mutation. The port glycine was reduced 93%, whereas the ability
locus for cycrl is between the origin of Hfr H and to transport L-alanine was only reduced by 65%.
the met, locus (2). Transduction experiments Kessel and Lubin (3) examined a D-serine-re-
showed that the mutations conferring second- and sistant mutant Trgly- for the ability to transport
third-step resistance are at least 0.5 min away L-alanine, D-alanine, and glycine. In this strain,
from the first-step mutation. Thus, the loss of D- the uptake of glycine and D-alanine was de-
alanine and glycine transport activity occurs in at pressed to about one-twentieth of the normal
least two distinct genetic sites. In a genetic anal- rate, whereas the uptake of L-alanine was de-
ysis of a serine auxotroph, Richter (Ph.D. Thesis, pressed to only one-half of the normal rate.
Univ. of Wisconsin, Madison, 1959) located a Moreover, Kessel and Lubin (3) isolated six addi-
glycine transport gene near the met, region. tional mutants for resistance to D-cycloserine or
The mutant (D-5) isolated in this laboratory D-serine. These mutants showed the same profile
represents the highest level of D-cycloserine re- of uptake as Trgly-. Thus, the mutants exam-
sistance that we have attained with E. coli. The ined by these workers, the mutants isolated by
mutant (D-5) is 80-fold resistant when compared Curtiss et al. (2), and the one isolated in this lab-
with E. coli W. A Lineweaver-Burk analysis indi- oratory all possess defective mechanisms for the
cates that the high- and low-affinity segments of transport of D-alanine and glycine. The decrease
the D-alanine-glycine transport systems are in the accumulation of L-alanine probably results
missing. The results summarized in Table 2 indi- from the overlap in L-alanine transport over the
cate that >90% of the transport activity for D- D-alanine-glycine transport system.
alanine and glycine has been lost, whereas 75% of ACKNOWLEDGMENTS
the transport activity for L-alanine is retained. A
consequence of the impaired transport for D- This investigation was supported by Public Health Service
grant Al-04615 from the National Institute of Allergy and
alanine in mutant D-5 was readily observed in Infectious Diseases and by a Public Health Service training
growth experiments. E. coli strain W can utilize grant 5TI-GM-626 from the Division of General Medical Sci-
either D- or L-alanine as a carbon source. In con- ences.
trast, mutant D-5 is unable to grow on D-alanine, LITERATURE CITED
whereas it grows on L-alanine. Thus, a func- 1. Benson, R. H. 1966. Limitations of tritium measurements
tioning transport system for D-alanine is required by liquid scintillation counting of emulsions. Anal.
for growth on this isomer. The slower rate of Chem. 38:1353-1356.
VOL. 105, 1971 MECHANISM OF D-CYCLOSERINE ACTION 1035
2. Curtiss, R., 111, L. J. Charamella, C. M. Berg, and P. E. lizing alanine in the biosynthesis of peptidoglycan. An-
Harris. 1965. Kinetic and genetic analyses of D-cyclo- timicrob. Ag. Chemother.-1967, p. 304-313.
serine inhibition and resistance in Escherichia coli. J. 8. Patterson, M. S., and R. C. Greene. 1965. Measurement of
Bacteriol. 90:1238-1250. low energy beta-emitters in aqueous solution by liquid
3. Kessel, D., and M. Lubin. 1965. Stability of a-hydrogen of scintillation counting of emulsions. Anal. Chem. 37:854-
amino acids during active transport. Biochemistry 4:561 - 857.
565. 9. Reitz, R. H., H. D. Slade, and F. C. Neuhaus. 1967. The
4. Lynch, J., and F. C. Neuhaus. 1966. On the mechanism of biochemical mechanism of resistance by streptococci to
action of the antibiotic O-carbamyl-D-serine in Strepto- the antibiotic D-cycloserine and O-carbamyl-D-serine.
coccus faecalis. J. Bacteriol. 91:449-460. Biochemistry 6:2561-2570.
5. Mora, J., and E. Snell. 1963. The uptake of amino acids by 10. Schwartz, J. H., W. K. Maas, and E. J. Simon. 1959. An
cells and protoplasts of Streptococcus faecalis. Biochem- impaired concentrating mechanism for amino acids in
istry 2:136-141. mutants of Escherichia coli resistant to L-canavanine and
6. Neuhaus, F. C. 1967. D-Cycloserine and O-carbamyl-D-se- D-serine. Biochem. Biophys. Acta 32:582-583.
rine, p. 40-83. In D. Gottlieb and P. D. Shaw (ed.), Anti- 11. Wargel, R. J., C. A. Shadur, and F. C. Neuhaus. 1970.
biotics: mechanism of action, vol. 1. Springer-Verlag, Mechanism of D-cycloserine action: transport systems
New York. for D-alanine, D-cycloserine, L-alanine, and glycine. J.
7. Neuhaus, F. C. 1968. Selective inhibition of enzymes uti- Bacteriol. 103:778-788.