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Urine Biomarkers
Abstract
An estimated 5 to 10 million people died from kidney disease in 2018 alone and about 150 million people are infected
annually with urinary tract infection. Statistically, kidney and urinary tract diseases ranked as the 12 th among the causes
of death and 17th among the causes of disability annually worldwide. In the Philippines, end-stage renal disease is the
7th leading cause of death. In Baguio City, 9.87% of 700 pupils was tested positive for urinary tract infection using the
dipstick method. Detection of these diseases can be easily done via urinalysis, a diagnostic tool that determines the
presence of certain urine constituents. Hence, this study aimed to determine the presence of certain inorganic, organic,
and pathological organic constituents in the urine samples as biomarkers to suggest indications of it to human health.
The scope of this study, however, was delimited to the qualitative tests in urinalysis. As such, data interpretation for the
inorganic and organic constituents that are normally found in the body was adjusted; pathological organic constituents,
however, was not adjusted. A total of randomly sampled 12 individuals (6 males and 6 females) aged 20 to 21 years
old participated in the study and about 200ml urine samples per individual were collected 24 hours before testing, using
toluene (C7H8) as preservative and amber bottle as the container. Based on the results of the tests for physical
properties, both of the randomly selected urine samples exhibited normal condition. For the results of the qualitative
tests for urine biomarkers, generally, most of the participants are also in normal condition. However, there is still a
probability of exhibiting diseases of the kidney and urinary tract, hepatobiliary diseases, diabetes, and heart diseases
for some of the participants. Overall, the results of the tests for physical properties and the qualitative tests for urine
biomarkers are influenced by certain lifestyle factors such as the use of diuretics, dehydration, starvation, increased or
decreased intake of foods having certain constituents found in urine, and others. The researchers recommend to
reproduce the qualitative tests results using the methodology used in the study and via the dipstick method; to conduct
quantitative tests in urinalysis using spectroscopy methods such as the near-infrared spectroscopy, surface-enhanced
Raman spectroscopy, or the Fourier transform infrared vibrational spectroscopy; and to have a follow-up diagnostic
screening tests such as the magnetic resonance imaging, computerized-tomography scan, plasma chemistry profile,
and complete blood count analysis among others.
Keywords: Biomarkers, Urinalysis, Urine
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Kidney and Transplant Institute, 2019). According of its efficacy to diagnose a wide diversity of
to Dr. Rowena Galpo, the health officer of Baguio diseases (Armstrong, 2007). The different
City, 9.87% of 700 pupils was tested positive for constituents of the urine can be used as
urinary tract infection using the dipstick method biomarkers to indicate different health conditions.
(Refuerzo, 2018). Last year, the Baguio General Biomarkers are any substances, properties, or
Hospital Medical Center was able to document constituents in a physiological system that can
some 105 individuals who acquired kidney indicate abnormalities or health conditions
ailment due to hypertensive nephrosclerosis including diseases.
while there were some 83 diabetic nephropathy
Nowadays, analysis of urine or urinalysis
patients who were also treated to be suffering
is still widely used to diagnose different types of
from kidney ailment. This year, Dr. Jennifer Pira,
diseases such as diabetes, kidney diseases, liver
the medical officer of the Cordillera Office of the
diseases, and urinary tract infection (Krans &
Department of Health, said that for the first
Jewell, 2018). Urinalysis is even considered as
quarter of this year, there were already 96
the third major diagnostic screening test in the
individuals who were treated with kidney ailment
clinical laboratory, only preceded by plasma
triggered by hypertensive nephrosclerosis while
chemistry profiles and complete blood count
there were some 87 cases of diabetic
analysis because of its efficiency in diagnosing
nephropathy which showed that more
health conditions including possible diseases an
hypertension and diabetes patients are now
individual may have (Coppens, Speeckaert, &
prone to acquiring kidney ailment. To address the
Delanghe, 2010). Detection of these diseases
aforementioned statistics, the significance of
can be efficiently done in urinalysis by
having an early diagnosis using an easy, efficient,
determining the presence of certain urine
but reliable diagnostic tool such as
biomarkers that serve as biomarkers of health
urinalysis is very important to lessen the
conditions. According to the study of Tzimenatos,
progressiveness of these diseases.
L. et al. (2018) entitled “Accuracy of the Urinalysis
The blood flows into the kidney via the for Urinary Tract Infections in Febrile Infants 60
renal artery and the wastes from the blood Days and Younger” urinalysis is highly sensitive
plasma are filtered in the glomerulus of the and specific for diagnosing urinary tract infection
kidney’s nephron in order to rid the body of toxic (Tzimenatos, et al., 2018). For other health
substances and other wastes (National Institute conditions and diseases, urinalysis may indicate
of Diabetes and Digestive and Kidney Diseases, the possibility of having a certain disease by
2019), the filtered blood will then flow out of the analyzing abnormalities on the urine constituents.
kidney via the renal vein and the wastes filtered
The presence of certain inorganic,
from the blood will be excreted in the body as
organic, and pathological organic constituents
urine (U.S. National Library of Medicine, 2019).
are determined to identify abnormalities in the
Urine is an aqueous waste byproduct excreted
urine sample, which can be used as biomarkers
from the body via urination that is usually
of health conditions. Inorganic urine biomarkers
composed of 95% water and different inorganic
such as calcium (Ca), magnesium (Mg), chlorides
and organic constituents such as urea (9.3 g/L),
(Cl), sulfates (SO4), and phosphates of Ca, Mg,
chloride (1.87 g/L), sodium (1.17 g/L), potassium
Na, K, and NH4; organic urine biomarkers such
(0.750 g/L), creatinine (0.670 g/L), and other
as urea (CH₄N₂O), uric acid (C5H4N4O3), and
dissolved ions and compounds such as proteins,
hormones, and metabolites (Boundless, 2019). creatinine (C4H7N3O); and pathologic organic
Urine was started to be used as a diagnostic tool urine biomarkers such as protein, glucose
6000 years ago through the use of a technique (C6H12O6), acetone bodies (C3H6O), bile salts and
bile acids (C24H40O5), and blood were all tested.
called uroscopy (Kamaledeen & Vivekanantham,
2015). Physicians before even described urine as This study aimed to determine the
a ‘divine fluid’ or a ‘window to the body’ because physical properties of the urine samples and the
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presence of certain inorganic, organic, and tested for further precipitation by adding the
pathological organic constituents as biomarkers C2K2O4 solution dropwise.
to suggest human health conditions.
C2K2O4 is a reducing reagent that inhibits
However, the scope of the study is the formation of turbidity; the presence of Ca in
delimited to qualitative urinalysis tests. As such, the urine, however, results in the formation of
quantitative data that can be used to analyze the turbidity (D'Sa, 2015).
urine biomarkers as diagnostic tools more
The test for Mg was done by filtrating
effectively in terms of sensitivity and specificity is
again the filtrate from the test for Ca. The solution
not within the scope of the study.
was then made alkaline by adding 10% ammonia
Methodology (NH3) water dropwise and few drops of
ammonium oxalate (C2H8N2O4) was added. It
A total of randomly sampled 12
was then set aside and was observed for
individuals (6 males and 6 females) aged 20 to 21
precipitate formation.
years old participated in the study. A total of
approximately 200ml urine samples per individual By making the pH of the urine alkaline
were collected 24 hours before testing to prevent before the addition of C2H8N2O4 after the addition
contamination which may result in false-positive of C2K2O4, the coprecipitation of Mg occurs if it is
or false-negative results. Toluene (C7H8) was present in the urine sample (D'Sa, 2015).
used as a preservative to prevent metabolic
The test for Cl was done by acidifying a
changes of urine analytes and bacterial
2ml urine sample with nitric acid (HNO3) solution
overgrowth. The urine samples were stored in an
and then adding 3 drops of silver nitrate (AgNO3)
amber bottle to protect light-sensitive metabolites
solution.
such as porphyrins and urobilinogen (Coppens,
Speeckaert, & Delanghe, 2010). Chloride is precipitated as silver chloride
(AgCl) with AgNO3 in presence of HNO3 (D'Sa,
Physical properties such as the color,
2015).
odor, transparency, and specific gravity was
determined using 2 randomly selected urine The test for SO4 was done by acidifying
samples, 1 from males and another from females. a 2ml urine sample with hydrochloric acid (HCl)
The color, odor, and transparency of the urine solution and then adding 10% barium chloride
samples was tested empirically. The specific (BaCl2) drop by drop in excess until a precipitate
gravity of the urine samples was quantified using was formed.
a urinometer.
When the BaCl2 is added to the urine, it
The presence or absence of various combines with the radicals of SO4 forming a
inorganic, organic, and pathological organic precipitate of barium sulfate (BaSO4) (D'Sa,
constituents of the urine samples was then 2015).
tested.
The test for the phosphates of Ca and Mg
Inorganic constituents such as Ca, Mg, was done by alkalifying a 5ml urine sample with
Cl, SO4, earthly phosphates (Ca and Mg), and dilute ammonium hydroxide (NH4OH). It was set
alkaline phosphates of (Na, K, and NH4) were aside and the formation of precipitates was
tested. observed. The solution was then warmed gently
in a hot water bath and filtered using the standard
The test for Ca was done by mixing 2ml
filter paper.
of the urine sample with 3 drops of 2% potassium
oxalate (C2K2O4) solution in a test tube. The If the urine is acidic, it will readily accept
solution was filtered using a standard filter paper hydrogen ions (H+) of NH4OH to balance the free
with an 11um pore size. The filtrate was then hydroxide ions (OH-). When urine contains a
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large amount of Ca in proportion to the PO4 3 drops of concentrated HNO3. It was then
present, it results in the formation of turbidity and evaporated in a water bath to dryness until all
more magnesium citrate (C6H6MgO7) must be HNO3 has been removed and a reddish or
added by the addition of NH4OH (D'Sa, 2015). yellowish residue remains. The residue was
cooled and a drop of dilute NH3 water was added.
The test for the phosphates of Na, K, and
NH4 was done by adding 3 drops of magnesia C5H4N4O3 is a reducing agent in a strong
mixture to the filtrate in the test for the alkaline condition that reduces colorless HNO3
phosphates of Ca and Mg. The mixture was then forming a colored complex (D'Sa, 2015).
warmed gently in a hot water bath, the nature and
The presence of C4H7N3O was tested by
amount of the precipitate were observed.
Jaffe’s test and nitroprusside test.
Magnesium hydroxide (Mg(OH)2), when
For Jaffe’s test, 1ml of the saturated
dissolved in water, dissociates into ions. When
picric acid (C6H3N3O7) solution was added to a
magnesia reacts with the ions upon warming,
3ml urine sample in a test tube and was made
inorganic phosphates results in the formation of
alkaline by adding 1% NaOH.
turbidity (D'Sa, 2015).
NaOH dissociates in water to produce
Organic constituents such as urea
OH-. The C4H7N3O in the urine reacts with
(CH₄N₂O), uric acid (C5H4N4O3), and creatinine
C6H3N3O7 solution in the alkaline medium to form
(C4H7N3O) were also tested.
a reddish colored complex of creatinine picrate. It
The presence of CH₄N₂O was tested by turns yellow when acidified since it is the original
evaporating a 10ml urine sample until its volume color of urine when it is acidic (D'Sa, 2015).
was reduced to one-third (3.33ml). The solution
For the nitroprusside test, 3 drops of
was cooled and about 2ml of 20% sodium
freshly prepared nitroprusside (C5FeN6Na2O)
hydroxide (NaOH) was added. The mixture was
solution were added to 2ml urine and were made
shaken gently and 3 drops of 0.05% copper
alkaline by adding 10% NaOH.
sulfate (CuSO4) were added.
The addition of NaOH makes the solution
Formation of brisk effervescence when
alkaline. C5FeN6Na2O in an alkaline medium
copper sulfate (CuSO4) decomposes CH₄N₂O to
reacts with urine resulting in the formation of
give nitrogen (N2) gas (D'Sa, 2015).
orange coloration due to C5H4N4O3in the
The presence of C5H4N4O3 was tested by presence of purines (D'Sa, 2015).
microscopy and the murexide test.
Pathologic organic constituents such as
For microscopy, C5H4N4O3 crystals were protein, glucose (C6H12O6), acetone bodies
first isolated by mixing 50ml filtered urine sample (C3H6O), bile salts and bile acids (C24H40O5), and
with 1ml of 25% HCl and setting it aside for blood were also tested.
approximately 48 hours. C5H4N4O3 crystals that
The presence of protein was tested by
settle out were collected and were examined
the coagulation test, Heller’s ring test, and
under a compound light microscope. Robert’s test.
HCl is a strong acid that increases the
For the coagulation test, a 2ml urine
concentration of H+, making the solution more sample was heated at an angle of 45o directly on
acidic. If HCl is added to the urine, it results in the
a Bunsen burner, boiling the upper half by
formation of C5H4N4O3 crystals that precipitate at
passing it over the flame. The development of
a pH less than 5.4 (D'Sa, 2015).
turbidity was observed and was confirmed by
For the murexide test, a small amount of acidifying with 2 drops of acetic acid (C2H4O2).
C5H4N4O3 was placed in an evaporating dish with
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In an alkaline medium, proteins may not Acetone (C3H6O) and acetonic acid
be precipitated owing to the formation of alkaline (C4H8O3) react with 5% sodium nitroprusside
meta-proteins, thus, acidification is necessary by solution in the presence of alkali to produce a
adding C2H4O2. The heated part shows turbidity purple ring at the junction (D'Sa, 2015).
due to the denaturation of proteins (D'Sa, 2015).
The presence of bile salts (C24H40O5)
For the Heller’s ring test, 1.5 ml was tested by Gmelin’s test. About 1ml of
concentrated HNO3 was placed in a tested and concentrated HNO3 was placed in a test tube and
2ml of urine was added carefully along the inner 3ml of urine was added by pipetting it carefully
walls of the tube without mixing. A white ring along the inner sides of the tube, without mixing,
appears in the junction between the two layers in and was set aside for observation.
the addition of HNO3.
HNO3 oxidizes bilirubin (C33H36N4O6) to
The concentrated HNO3 causes protein biliverdin (C33H34N4O6) giving different colors
denaturation, hence the precipitation of proteins from green to violet (D'Sa, 2015).
due to the decomposition into oxides of nitrogen
The presence of bile acids (C24H40O5)
and water (D'Sa, 2015).
was tested by Petten Kofer’s test. About 3ml urine
For Robert’s test, 2ml of urine was mixed sample was mixed with 3 drops of 5% sucrose
with 2ml of Robert’s reagent, and setting it aside (C12H22O11) solution in a test tube. About 3 ml of
for observation. concentrated sulfuric acid (H2SO4) was poured
down along the inner sides of the test tube
HNO3 in Robert’s reagent (concentrated
carefully. The formation of a red ring was
HNO3 and saturated magnesium sulfate (MgSO4)
observed and was then stirred and set aside for
solution) causes the precipitation of albumin
additional observation.
resulting in the formation of a white ring (D'Sa,
2015). Bile acids will react with
hydroxymethylfurfural (C6H6O3) to form a red
The presence of C6H12O6 was tested by
solution. C6H6O3 is formed from sugar that was
Benedict’s test. About 2ml of Benedict’s reagent
dehydrated by H2SO4 (Selengkapniya, 2013).
was mixed thoroughly with 4 drops of the urine
sample. The solution was boiled in a water bath The presence of blood was tested by
for 3 minutes and was set aside to cool for benzidine reaction by bringing a 2ml urine sample
observation. into a boil. It was then cooled and about 2ml of
saturated benzidine (C12H12N2) solution glacial
Cuprous ions (Cu+) combine with OH- to
C2H4O2 was added and another 1 ml of 3%
form yellow cuprous hydroxide (CuOH) which
hydrogen peroxide (H202) was added.
upon heating is converted to red cuprous
oxide(Cu2O) (D'Sa, 2015). H2O2 liberates oxygen from hemoglobin.
Liberated oxygen from this reaction is allowed to
The presence of C3H6O was tested by
react with C12H12N2 which undergoes oxidation to
the legal test. A freshly prepared 5%
produce a blue or a green colored product
C5FeN6Na2O solution was used to treat a 2ml
(Agarwal, Anand, & Anand, 2016).
urine sample. The solution was mixed thoroughly
and was made alkaline by adding NaOH and NH3
water.
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The inorganic, organic, and pathological researchers would preliminarily interpret the
organic constituents of the urine were determined ‘presence’ of either inorganic or organic
to be used as biomarkers of health conditions. constituent as ‘present at a high level’, while
This study, however, focused only on the ‘absence’ as ‘present at a low level’. This
qualitative tests in urinalysis, as such, the adjustment, however, will be included in the
inorganic and the organic constituents that are recommendation section to conduct follow-up
normally present in the urine but are indicative of diagnostic screening tests to validate the results
health conditions only when it exhibited abnormal of the study. For the pathological organic
concentrations can’t be used effectively because constituents, no adjustment was made because
of the unavailability of the quantitative data for the its presence is already an indication of disease.
concentrations of constituents. Qualitative tests
The following sections of this paper will
in urinalysis indicate only the presence or
present the results of the tests for physical
absence of a certain constituent without providing
properties and qualitative tests in urinalysis for
any data of its concentration.
determining the inorganic, organic, and
Since the all of the included inorganic pathological organic biomarkers of urine, along
and organic constituents are normally present in with the interpretation and analysis of the results
the urine, to make use of the data collected as and its implications to human health.
biomarkers of health conditions, however, the
Table 1: Results of the Tests for the Physical Properties of 2 Randomly Selected Urine Samples
Results of the Tests for the Physical Properties of 2 Randomly Selected Urine Samples
Physical Properties Male Female Interpretation
Color Slight yellow Yellow to orange Normal
Odor Slightly aromatic Aromatic Normal
Transparency Clear Clear Normal
Specific Gravity 1.002 1.003 Slightly below normal
As per the data presented in table 1, the present in the urine sample such as ammonia
2 randomly selected urine samples exhibited from the decomposition of urea.
normal color, odor, and transparency, and is
For the transparency, turbidity of the
within the normal range of specific gravity.
urine may be indicative of conditions such as the
The color of the urine sample is formation of pus, bacterial infection, cellular
dependent on the pigments present in the urine. damage, acidosis, alkalosis etc. The more turbid
The observed yellow color for both of the male a urine is, the more it is indicative of the
and urine samples is due to the presence of aforementioned different health conditions. It is
urochrome and urobilin, which are the pigments also directly correlated to the amount of total
responsible for the normal yellow color of urine; dissolved solids in the urine, which is also directly
intensity of the color is directly proportional to the related to specific gravity.
concentration of these pigments, mainly due to
The specific gravity of urine, the normal
differences in diet and water consumption.
range of which is from 1.015 to 1.025. The results
For the odor, the more aromatic the urine for both the urine samples from male (1.002) and
is, the more concentrated are the volatile acids female (1.003) were slightly below normal. This
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can be due to decreased salt intake, decreased more concentrated the urine is because it gives a
protein intake, or increased water intake because rough estimate of the total amount of dissolved
the value of specific gravity is directly proportional solids in the urine and the state of hydration of a
to the amount of salt, urea, and protein in the patient.
urine and is inversely proportional to the amount
of water. Thus, the higher the specific gravity, the
Table 2.1: Inorganic Urine Biomarkers for Specific Health Conditions
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The data presented in table 2.1 shows 83% of the urine samples from both males and
the different inorganic biomarkers determined in females exhibited positive results.
the qualitative tests in urinalysis and the health
It is normal to find Ca in the urine
conditions or diseases they are indicative of. As
because it is widely used in the body. However, if
per the result of the tests for inorganic
urine Ca levels are too high or too low, it is
constituents in the urine samples of 12 individuals
indicative of health conditions and diseases. High
(6 males and 6 females) presented in table 2.2,
urine Ca level is indicative of dehydration, too
the following percentages of positive results to
much vitamin D intake, too much calcium intake,
each test and their implications to human health
acidic urine, use of loop diuretics,
are presented in this section.
hyperparathyroidism, hypercalciuric, or
For the presence of Ca, 83% of the urine hypocalcemia (Murrell, 2018) (Blocka, 2018).
samples of males and 83% of the urine samples Low urine Ca level is indicative of vomiting,
of females exhibited positive results, a total of diarrhea, vitamin D deficiency, use of thiazide
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For the presence of Cl, 100% of the urine samples from females exhibited positive results,
samples from males and 100% of the urine a total of 100% of the urine samples from both
samples from females exhibited positive results, males and females exhibited positive results.
a total of 100% of urine samples for both males
SO4 should be present in the urine
and females exhibited positive results.
because higher urinary SO4 concentration is
Cl is an anion that works with other associated with a more beneficial profile of renal
electrolytes to help regulate the amount of fluid in risk markers and is independently associated with
the body and maintain acid-base balance. a reduced risk for diabetic kidney disease in type
Normal urine Cl level range from 25 to 40 mEq/L. 2 diabetes individuals. Each doubling of urinary
An increased level of urine Cl can indicate SO4 was associated with 19% lower risk of
starvation, dehydration, increased salt intake, diabetic kidney disease (van den, et al., 2016).
polyuria, salt wasting nephropathy, High SO4 indicate high protein intake, while low
adrenocortical insufficiency, or Addison disease SO4 indicate low protein intake or diabetic kidney
(Goldman & Schafer, 2011) (American disease. (Laboratory Corporation of America®
Association for Clinical Chemistry, 2016). A Holdings, 2019)
decreased level of urine Cl, however, can indicate
In using urine SO4 as a biomarker as
decreased salt intake, diarrhea, vomiting,
presented in table 2.1 and the result of the
excessive sweating, increased salt retention,
qualitative test for the presence of SO4 presented
Cushing syndrome, Conn syndrome, or
in table 2.2, 100% of the male participants are in
congestive heart failure (Goldman & Schafer,
normal condition. Using the adjustment made by
2011) (University of Rochester Medical Center
the researchers to use qualitative data as
Rochester, 2019).
biomarkers of health conditions, however, about
In using urine Cl as a biomarker as 100% have high protein intake. For female
presented in table 2.1 and the result of the participants, 100% are in normal condition. In
qualitative test for the presence of Cl presented adjustment, however, 100% have high protein
in table 2.2, 100% of the male participants are in intake. In total, about 100% are in normal
normal condition. Using the adjustment made by condition. In adjustment, however, 100% have
the researchers to use qualitative data as high protein intake.
biomarkers of health conditions, however, 100%
For the presence of phosphates of Ca,
of the male participants may exhibit health
83% of the urine samples from males and 67% of
conditions such as starvation, dehydration,
the urine samples from females exhibited positive
increased salt intake, polyuria, salt wasting
results, a total of 75% of the urine samples from
nephropathy, adrenocortical insufficiency, or
both males and females exhibited positive
Addison disease. For female participants, 100%
results.
are in normal condition. In adjustment, however,
100% of the female participant may exhibit health Phosphates of Ca are usually present in
conditions such as starvation, dehydration, urine with a pH above 6.5. The formation of
increased salt intake, polyuria, salt wasting calcium phosphate (Ca3(PO4)2) crystals can be
nephropathy, adrenocortical insufficiency, or caused by a combination of factors including
Addison disease. In total, 100% are in normal decreased urine volume, urine alkalization, or a
condition. In adjustment, however, all the diet rich in Ca. In individuals with kidney stones,
participants may exhibit health conditions such as a repeated presence of (Ca3(PO4)2) crystals
starvation, dehydration, increased salt intake, could indicate the probable nature of stones (U.S.
polyuria, salt wasting nephropathy, National Library of Medicine, 2019). High urine
adrenocortical insufficiency, or Addison disease. phosphates of Ca level indicates dehydration,
increased salt intake, increased oxalate intake
For the presence of SO4, 100% of the
(e.g. in spinach), intake of calcium supplements,
urine samples from males and 100% of the urine
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intake of vitamin D, or kidney stones. While low indicates citrate consumption (e.g. citrus), use of
urine phosphates of Ca level indicates decreased thiazide diuretics, alkaline urine, or
salt intake or decreased oxalate intake (Biggers, hypermagnesemia (Suller, et al., 2005) (WebMD
2019). LLC, 2019).
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For the presence of phosphates of NH4, condition. Using the adjustment made by the
50% of the urine samples from males and 50% of researchers to use qualitative data as biomarkers
the urine samples from females exhibited positive of health conditions, however, about 50% of the
results, a total of 50% of the urine samples from male participants may exhibit health conditions
both males and females exhibited positive such as high protein intake, dehydration,
results. vomiting, diarrhea, infection, or chronic metabolic
acidosis such as hyperchloremic acidosis and
To maintain acid-base balance, the
liver infections and diseases; the remaining 50%
kidney must generate new bicarbonate by
have low protein intake. For female participants,
metabolizing glutamine and excreting NH4. High
about 50% are in normal condition. In adjustment,
level of phosphates of NH4 in the urine is
however, about 50% of the female participants
indicative of high protein intake, dehydration,
may exhibit health conditions such high protein
vomiting, diarrhea, infection, or chronic metabolic
intake, dehydration, vomiting, diarrhea, infection,
acidosis such as hyperchloremic acidosis and
or chronic metabolic acidosis such as
liver infections and diseases. While low level of
hyperchloremic acidosis and liver infections and
phosphates of NH4 indicates low protein intake
diseases; the remaining 50% have low protein
(Carlisle, Donnelly, & Halperin, 1991) (Lee, et al.,
intake. In total, about 50% are in normal
2015) (Barhum, 2018).
condition. In adjustment, however, about 50% of
In using urine phosphates of NH4 as a all the participants may exhibit health conditions
biomarker as presented in table 2.1 and the result such as high protein intake, dehydration,
of the qualitative test for the presence of vomiting, diarrhea, infection, or chronic metabolic
phosphates of NH4 presented in table 2.2, about acidosis such as hyperchloremic acidosis and
50% of the male participants are in normal liver infections and diseases; the remaining 50%
have low protein intake.
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The data presented in table 3.1 shows carbohydrate intake), fasting, kidney disease,
the different organic biomarkers determined in urinary tract obstruction, congestive heart failure,
the qualitative tests in urinalysis and the health or gastrointestinal bleeding (Stephens, 2018)
conditions they are indicative of. As per the result (Mayo Foundation for Medical Education and
of the tests for organic constituents in the urine Research, 2019). Its presence at low level,
samples of 12 individuals (6 males and 6 however, is indicative of low protein intake, low
females) presented in table 3.2, the following protein metabolism (high carbohydrate intake)
percentages of positive results to each test and (Stephens, 2018), Kwashiorkor disease
their implications to human health are presented (Fogoros, 2018) or kidney disease (Gabbey,
in this section. 2018).
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have low protein intake, low protein metabolism, participants are in normal condition. Using the
Kwashiorkor disease, or kidney disease. In total, adjustment made by the researchers to use
about 42% are in normal condition. In adjustment, qualitative data as biomarkers of health
however, about 42% of all the participants may conditions, however, about 67% of the male
have high protein intake, high protein metabolism participants may exhibit health conditions such as
(low carbohydrate intake), fasting, kidney being overweight, intake of foods high in purines,
disease, urinary tract obstruction, congestive kidney disease, hyperthyroidism, psoriasis, renal
heart failure, or gastrointestinal bleeding; the insufficiency, or diabetes; the remaining 33% may
remaining 58% may have low protein intake, low exhibit health conditions such as being drunk,
protein metabolism, Kwashiorkor disease, or acute kidney injury, or hypothyroidism. For
kidney disease. female participants, about 67% are in normal
condition. In adjustment, however, about 67% of
For the presence of uric acid (C5H4N4O3),
the female participants may exhibit health
67% of the urine samples from males and 67% of
conditions such as being overweight, intake of
the urine samples from females exhibited positive
foods high in purines, kidney disease,
results, a total of 67% of the urine samples from
hyperthyroidism, psoriasis, renal insufficiency, or
both males and females exhibited positive
diabetes; the remaining 33% may exhibit health
results.
conditions such as being drunk, acute kidney
Catabolism of purines (Adenine [C5H5N5] injury, or hypothyroidism. In total, about 67% are
and Guanine [C5H5N5O]) leads to the formation of in normal condition. In adjustment, however,
C5H4N4O3. Purines are compounds that enter the about 67% of all the participants may exhibit
bloodstream during the natural breakdown of health conditions such as being overweight,
cells in the body. Some foods such as sardines, intake of foods high in purines, kidney disease,
mushrooms, and peas also contribute to the hyperthyroidism, psoriasis, renal insufficiency, or
formation of purines (Gabbey, Uric Acid Test diabetes; the remaining 33% may exhibit health
(Urine Analysis), 2018). Once purines release conditions such as being drunk, acute kidney
C5H4N4O3, it is carried by the blood to the kidneys injury, or hypothyroidism.
to remove it from the body through urination. As
For the presence of creatinine (C4H7N3O)
such, the presence of C5H4N4O3 in the urine is
using Jaffe’s test, 100% of the urine samples from
normal. However, too much C5H4N4O3 or
males and 100% of the urine samples from
hyperuricemia (above 2.4-6.0 mg/dL for female females exhibited positive results, a total of 100%
and 3.4-7.0 mg/dL for male) or too little C5H4N4O3 of the urine samples from both males and
or hypouricemia (below 2.4-6.0 mg/dL for female females exhibited positive results; using
and 3.4-7.0 mg/dL for male) (Chemocare, 2019). nitroprusside test, 83% of the urines samples
High level C5H4N4O3 is indicative of being from males and 83% of the urine samples from
overweight, intake of foods high in purines females exhibited positive results, a total of 83%
(shellfish, red meat, organ meat etc.), kidney of the urine samples from both males and
disease, hyperthyroidism, psoriasis, renal females exhibited positive results.
insufficiency, or diabetes (Chemocare, 2019)
(Mayo Foundation for Medical Education and C4H7N3O is a waste byproduct of muscle
Research, 2019). Low level C5H4N4O3, on the metabolism that is filtered in the blood by the
other hand, can be due to recent alcohol intake, kidney to remove it from the body through
acute kidney injury, or hypothyroidism (Mount, urination (Pietrangelo, 2017). Normal urine
2019). C4H7N3O values generally range from 955 to
2,936 milligrams (mg) per 24 hours for males, and
In using C5H4N4O3 as a biomarker as 601 to 1,689 mg per 24 hours for females (Mayo
presented in table 3.1 and the result of the Foundation for Medical Education and Research,
qualitative test for the presence of C5H4N4O3 2019). High C4H7N3O level indicate high protein
presented in table 3.2, about 67% of the male
15
Biomolecules
Urine Biomarkers
intake. Low C4H7N3O level indicate low protein using the nitroprusside test about 17% of the
intake or a kidney disease because as the male participants have high protein intake; the
kidneys become impaired for any reason, the remaining 83% have low protein intake or kidney
ability of the kidney to filter C4H7N3O from the disease. For female participants, in using Jaffe’s
blood decreases (Stephens, Creatinine Urine test 100% of the female participants are in normal
Test (Urine 24-Hour Volume Test), 2017) condition, in using the nitroprusside test about
(Michigan Medicine, University of Michigan, 83% of the female participants are in normal
2018). condition. In adjustment, however, in using
Jaffe’s test 100% of the female participant have
In using C4H7N3O as a biomarker as
high protein intake, in using the nitroprusside test
presented in table 3.1 and the result of the
about 17% of the female participants have high
qualitative tests for the presence of C4H7N3O
protein intake; the remaining 83% have low
presented in table 3.2, in using Jaffe’s test 100%
protein intake or a kidney disease. In total, using
of the male participants are in normal condition,
Jaffe’s test 100% of all the participants are in
in using the nitroprusside test about 83% of the
normal condition, in using the nitroprusside test
male participants are in normal condition. Using
about 83% are in normal condition. In adjustment,
the adjustment made by the researchers to use
however, using Jaffe’s test 100% have high
qualitative data as biomarkers of health
protein intake, in using the nitroprusside test
conditions, however, in using Jaffe’s test 100% of
about 17% have high protein intake; the
the male participants have high protein intake, in
remaining 83% have low protein intake.
Table 4.2: Results of the Qualitative Tests for Pathological Organic Constituents
16
Biomolecules
Urine Biomarkers
Heller’s ring
test - - - - - - 0% - - - - - - 0% 0%
(Protein)
Robert’s test
- - - - - - 0% - - - - - - 0% 0%
(Protein)
Benedict’s
test - - + - - - 17% - - - - - - 0% 8%
(Glucose)
Legal test
(Acetone + + - - - + 50% + - - - - + 33% 42%
bodies)
Gmelin’s
test + - + + - + 67% + + - + - + 67% 67%
(Bile salts)
Petten
Kofer’s test + + + - + + 83% + + - - + + 67% 75%
(Bile acids)
Benzidine
test - - - - - - 0% - - - - - - 0% 0%
(Blood)
The data presented in table 4.1 shows conditions or diseases allow proteins to pass
the different pathological organic biomarkers through the filtration system of the kidney causing
determined in the qualitative tests in urinalysis the presence of protein in the urine. A temporary
and the diseases they are indicative of. As per the rise in urine’s protein level can be observed but
result of the tests for pathologic organic doesn’t necessarily indicate a disease, after
constituents in the urine samples of 12 individuals having a strenuous exercise, fever, exposure to
(6 males and 6 females) presented in table 4.2, extreme cold, emotional stress, and dehydration.
the following percentages of positive results to Persistently elevated protein levels in the urine,
each test and their implications to human health however, is indicative of diseases such as, but
are presented in this section. not limited to, chronic kidney disease, diabetes,
heart disease, pyelonephritis, nephrotic
For the presence of protein using the
syndrome, and glomerulonephritis (Mayo
coagulation test, 50% of the urine samples from
Foundation for Medical Education and Research,
males and 83% of the urine samples from
2018).
females exhibited positive results, a total of 67%
of the urine samples from both males and In using the presence of protein as a
females exhibited positive results; in using biomarker as presented in table 4.1, together with
Heller’s ring test, 0% of the urine samples of the result of the qualitative tests for the presence
males and 0% of the urine samples of females of protein using the coagulation test presented in
exhibited positive results, a total of 0% of the table 4.2, about 50% of the male participants are
urine samples from both males and females in normal condition and the remaining 50% may
exhibited positive results; and in using Robert’s have chronic kidney disease, diabetes, heart
test, 0% of the urine samples from males and 0% disease, pyelonephritis, nephrotic syndrome, or
of the urine samples from females exhibited glomerulonephritis. For female participants,
positive results, a total of 0% of the urine samples about 17% are in normal condition and the
from both males and females exhibited positive remaining 83% may have chronic kidney disease,
results. diabetes, heart disease, pyelonephritis, nephrotic
syndrome, or glomerulonephritis. In total, about
Glomerular filtration in the kidney filters
33% of all the participants are in normal condition
waste products in the blood while retaining those
and the remaining 67% may have chronic kidney
that are needed by the body, including proteins
(American Kidney Fund, 2019). However, some
17
Biomolecules
Urine Biomarkers
disease, diabetes, heart disease, pyelonephritis, Normally, the human body uses C6H12O6
nephrotic syndrome, or glomerulonephritis. as its primary source of energy. When C6H12O6
levels, however, are low or because the body
In using the presence of protein as a
lacks enough insulin to help tissues absorb
biomarker, determined by Heller’s ring test, 100%
C6H12O6, the physiology turns into breaking down
of the male participants are in normal condition.
fats for energy, byproducts of which are ketone
For female participants, about 100% are in
(U.S. National Library of Medicine, 2019). C3H6O
normal condition. In total, 100% of all the
is the simplest ketone, it can be found in the urine
participants are in normal condition.
when C3H6O levels in the blood are way above
In using the presence of protein as a the normal range of 0.6 to 1.5 mmol/L; its
biomarker, determined by Robert’s test, 100% of presence indicates diabetes which can develop to
the male participants are in normal condition. For serious complications such as diabetic
female participants, about 100% are in normal ketoacidosis (DKA), which may lead to cerebral
condition. In total, 100% of all the participants are edema, loss of consciousness, diabetic coma,
in normal condition. and even death (Nall, 2017).
For the presence of glucose (C6H12O6) In using the presence of C3H6O bodies as
using Benedict’s test, 17% of the urine samples a biomarker as presented in table 4.1, together
from males and 0% of the urine samples from with the result of the qualitative tests for the
females exhibited positive results, a total of 8% of presence of C3H6O bodies using the legal test
the urine samples from both males and females presented in table 4.2, about 50% of the male
exhibited positive results. participants are in normal condition and the
remaining 50% may have diabetes. For female
When the blood C6H12O6 concentration is participants, about 67% are in normal condition
10mmol/L (180mg/dL), which is the blood and the remaining 33% may have diabetes. In
C6H12O6 level of diabetic patients (Freeth, 2019), total, about 58% of all the participants are in
the kidney starts to remove extra C6H12O6 in the normal condition and the remaining 42% may
bloodstream resulting in the presence of C6H12O6 have diabetes.
in the urine. Thus likewise, the presence of
C6H12O6 in the urine is indicative of having a high For the presence of bile salts (C24H40O5)
blood C6H12O6 level due to diabetes ( Institute for using Gmelin’s test, 67% of the urine samples
Quality and Efficiency in Health Care, 2018). from males and 67% of the urine samples from
females exhibited positive results, a total of 67%
In using the presence of C6H12O6 as a of the urine samples from both males and
biomarker as presented in table 4.1, together with females exhibited positive results.
the result of the qualitative tests for the presence
of C6H12O6 using Benedict’s test presented in There should be no presence of
table 4.2, about 83% of the male participants are C24H40O5 in the urine because it only appears in
in normal condition and the remaining 17% may the urine when there is an obstruction to the
have diabetes. For female participants, 100% are biliary tract causing cholestasis, symptoms of
in normal condition. In total, about 92% of all the which include jaundice skin itching, dark urine,
participants are in normal condition and the and foul-smelling, light-colored stools (Herrine,
remaining 8% may have diabetes. 2018). Moreover, this obstruction will lead to an
increase in the bile acids in the blood resulting in
For the presence of acetone (C3H6O) hepatobiliary diseases such as cholestatic liver
bodies using the legal test, 50% of the urine diseases and cholangiopathies (Fickert &
samples from males and 33% of the urine Wagner, 2017).
samples from females exhibited positive results,
a total of 42% of the urine samples from both In using the presence of C24H40O5 as a
males and females exhibited positive results. biomarker as presented in table 4.1, together with
18
Biomolecules
Urine Biomarkers
the result of the qualitative tests for the presence males and 0% of the urine samples from females
of C24H40O5 using Gmelin’s test presented in table exhibited positive results, a total of 0% of the
3.2, about 33% of the male participants are in urine samples from both males and females
normal condition and the remaining 67% may exhibited positive results.
have a hepatobiliary disease such as cholestatic
The presence of blood in the urine or
liver diseases or cholangiopathies. For female
hematuria is a biomarker for serious conditions
participants, about 33% are in normal condition
that include urinary tract infection, acute cystitis,
and the remaining 67% may have a hepatobiliary
pyelonephritis, kidney stones,
disease such as cholestatic liver diseases or
glomerulonephritis, polycystic kidney disease,
cholangiopathies. In total, about 33% of all the
and sickle cell disease (National Institute of
participants are in normal condition and the
Diabetes and Digestive and Kidney Diseases,
remaining 67% may have hepatobiliary disease
2018).
such as cholestatic liver diseases or
cholangiopathies. In using the presence of blood as a
biomarker as presented in table 4.1, together with
For the presence of bile acids (C24H40O5)
the result of the qualitative tests for the presence
using Petten Kofer’s test, 83% of the urine
of blood using the benzidine test presented in
samples from males and 67% of the urine
table 4.2, 100% of the male participants are in
samples from females exhibited positive results,
normal condition and 0% may exhibit urinary tract
a total of 75% of the urine samples from both
infection, acute cystitis, pyelonephritis, kidney
males and females exhibited positive results.
stones, glomerulonephritis, polycystic kidney
C24H40O5 have diverse physiological disease, or sickle cell disease. For female
functions that include the elimination of participants, 100% are in normal condition and
cholesterol, fat absorption, energy expenditure 0% may exhibit urinary tract infection, acute
regulation, and sugar and lipid metabolism cystitis, pyelonephritis, kidney stones,
(Monte, Marin, Antelo, & Vazquez-Tato, 2009). In glomerulonephritis, polycystic kidney disease, or
high concentrations, however, it exhibits sickle cell disease. In total, 100% of all the
pathological effects due to their direct detergent participants are in normal condition and 0% may
effects on biological membranes, apoptotic and exhibit urinary tract infection, acute cystitis,
necrotic effects, and cancer-promoting effects pyelonephritis, kidney stones,
(Beuers, 2010). As such, the presence of bile glomerulonephritis, polycystic kidney disease, or
acids in the urine serves as a biomarker for sickle cell disease.
cholestatic diseases (Sinakos & Lindor, 2010).
In conclusion, based on the results of the
In using the presence of C24H40O5 as a tests for physical properties, both of the randomly
biomarker as presented in table 4.1, together with selected urine samples exhibited normal
the result of the qualitative tests for the presence condition. For the results of the qualitative tests
of C24H40O5 using Petten Kofer’s test presented in for urine biomarkers, generally, most of the
table 4.2, about 17% of the male participants are participants are also in normal condition.
in normal condition and the remaining 83% may However, there is still a probability of exhibiting
have a cholestatic disease. For female diseases of the kidney and urinary tract,
participants, about 33% are in normal condition hepatobiliary diseases, diabetes, and heart
and the remaining 67% may have a cholestatic diseases for some of the participants. Overall, the
disease. In total, about 25% of all the participants results of the tests for physical properties and the
are in normal condition and the remaining 75% qualitative tests for urine biomarkers are
may have a cholestatic disease. influenced by certain lifestyle factors such as the
use of diuretics, dehydration, starvation,
For the presence of blood using
increased or decreased intake of foods having
benzidine test, 0% of the urine samples from
certain constituents found in urine, and others.
19
Biomolecules
Urine Biomarkers
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