Documenti di Didattica
Documenti di Professioni
Documenti di Cultura
Swastik Biswas
BS-MS First year
Indian Institute of Science Education and Research,Pune
KVPY Registration No. SB-1712058
MATERIALS
a)Tryptophan-PDP-Tryptophan
BOC deprotection:
Some flakes of boc-W-PDP-W-boc is taken in a round bottomed flask
For half an hour, The crystals were dissolved in 20ml DCM using magnetic
stirrer placed in ice bath and the whole setup was in a fume hood. After
dissolution,20ml of TFA(trifluoroacetic acid) was added to deprotect. After 4
hours, the solution is left to evaporate in rotary evaporator at 60◦C.After
complete evaporation, again DCM was added to evaporate so that TFA would
also evaporate with it also. This process was repeated 4-5 times then kept in a
round-bottomed flask with a rubber stopper wrapped by polythene wrap
b)Tryptophan-hex-Tryptophan
BOC deprotection:
Some flakes of boc-W-hexyl-W-boc is taken in a round bottomed flask
For half an hour, The crystals were dissolved in 20ml DCM using magnetic
stirrer placed in ice bath and the whole setup was in a fume hood. After
dissolution,20ml of TFA(trifluoroacetic acid) was added to deprotect. After 4
hours, the solution is left to evaporate in rotary evaporator at 60◦C.After
complete evaporation, again DCM was added to evaporate so that TFA would
also evaporate with it also. This process was repeated 4-5 times then kept in a
round-bottomed flask with a rubber stopper wrapped by polythene wrap
INSTRUMENTATION TECHNIQUES
1.THIN LAYER CHROMATOGRAPHY
Thin layer chromatography (TLC) is a chromatography technique used to
separate mixtures.Thin layer chromatography is performed on a sheet of glass,
plastic, or aluminum foil, which is coated with a thin layer of adsorbent
material, usually silica gel, aluminum oxide, or cellulose (blotter paper). This
layer of adsorbent is known as the stationary phase. After the sample has been
applied on the plate, a solvent or solvent mixture (known as the mobile phase)
is drawn up the plate via capillary action. Because different analytes ascend
the TLC plate at different rates, separation is achieved. Thin layer
chromatography can be used to: Monitor the progress of a reaction, identify
compounds present in a given substance, determine the purity of a substance.
The behavior of an individual compound in TLC is characterized by a quantity
Known as Rƒ and is expressed as a decimal fraction. The Rƒ is calculated by
dividing the distance the compound traveled from the original position by the
distance the solvent travelled from the original position (the solvent front).[1]
2.COLUMN CHROMATOGRAPHY
Column chromatography in chemistry is a method used to purify individual
chemical compounds from mixtures of compounds. It is often used for
preparative applications on scales from micrograms up to kilograms. The
classical preparative chromatography column, is a glass tube with a diameter
from 5 mm to 50 mm and a height of 5 cm to 1 m with a tap and some kind of
a filter (a glass frit or glass wool plug – to prevent the loss of the stationary
phase) at the bottom. Two methods are generally used to prepare a column:
the dry method, and the wet method. The technique typically requires mesh
70 – 230 (63 –200 μm) silica gel. The mobile phase moves through the
stationary phase(column) picking up the compounds to be tested. As the
mobile phase continues to travel through the stationary phase it takes the
compounds with it.[3]
One method to speed up the process is to use Flash Chromatography. This
method uses a pressure of about 10 psi of air or nitrogen to force the mobile
phase through the column. Because the rate of the mobile phase is increased,
in general, this method gives a poorer separation. However, by using a finer
grade of alumina or silica, flash chromatography can be used to increase the
speed without lowering the quality of the separation.
Cationic exchangers:
It possesses negatively charged groups and these will attract positively charged
groups. These exchangers are also called acidic ion exchange materials since
their negative charges result from the proteolysis of acidic groups.
Anionic exchangers:
It has positively charged groups, which will attract negatively charged
molecules. This exchanger is termed as basic ion exchange materials since their
positive charges generally result from the association of protons with basic
groups.
Based upon the affinity of ions towards the matrix the ions like cation and
anion are separated. The ions that have less affinity towards matrices will elute
first and the ions that have more affinity towards matrices it will elute later.[4]
Hyperpolarization
Two-dimensional
Three-dimensional
Higher-dimensional multi frequency techniques
Although large amounts of sample are needed when compared with mass
spectroscopy, NMR is non-destructive and with modern instruments good data
may be obtained from samples weighing less than a milligram.The 1H nucleus is
most commonly studied by using NMR spectroscopy because of its high natural
abundance (99.98%) and the fact that it is invariably present in the majority of
organic compounds. PMR provides information about the number of different
types of protons and also regarding the nature of the immediate environment
of each of them.
5. MALDI-TOF
Mass spectrometry is an analytical technique in which chemical compounds
are ionized into charged molecules and ratio of their mass to charge (m/z) is
measured. The sample for analysis by MALDI MS is prepared by mixing or
coating with solution of an energy-absorbent, organic compound called matrix.
When the matrix crystallizes on drying, the sample entrapped within the
matrix also co-crystallizes. The sample within the matrix is ionized in an
automated mode with a laser beam. Desorption and ionization with the laser
beam generates singly protonated ions from analytes in the sample. The
protonated ions are then accelerated at a fixed potential, where these
separate from each other on the basis of their mass-to-charge ratio (m/z). The
charged analytes are then detected and measured using different types of
mass analyzers like quadrupole mass analyzers, ion trap analyzers, time of
flight (TOF) analyzers etc.
6. SEM
SEM is a versatile advanced instrument which is largely employed to observe
the surface phenomena of the materials. The sample is shot in a SEM
using high-energy electron, and the outcoming electrons/X-rays are analysed.
These outcoming electrons/X-rays give information about topography,
morphology, composition, orientation of grains, crystallographic information,
etc. of a material. The SEM instrument is based on the principle that the
primary electrons released from the source provide energy to the atomic
electrons of the specimen which can then release as the secondary
electrons (SEs) and an image can be formed by collecting these secondary
electrons from each point of the specimen, the basic requirement for SEM to
operate under a vacuum to avoid interactions of electrons with gas molecules
in order to obtain high resolution. In addition, the primary electrons
produced and emitted from the electron gun are accelerated by heating or
applying high energy in the range of 1−40 keV [2,4]. These emitted electrons
are focused and confined to a monochromatic beam (to a diameter of 100 nm
or less)
The confined primary electrons are scanned across the sample surface by
scanning coils in a raster pattern. Once the primary electron beam hits the
sample surface, it will interact with the near-surface area of the sample to a
certain depth in many different ways. The impringing electrons accelerated
towards the specimens have substantial quantities of kinetic energy, which
lose their energy inside the sample by generating several signals from the
interactions of electrons with specimen. It scattered both elastically and
inelastically in the sample
7. TEM
Transmission electron microscopy (TEM) is a microscopy technique whereby a
beam of electrons is transmitted through an ultra-thin specimen, interacting
with the specimen as it passes through. An image is formed from the
interaction of the electrons transmitted through the specimen; the image is
enlarged and focused onto an imaging device, such as a fluorescent screen, on
a layer of photographic film, or to be detected by a sensor such as a CCD
camera.
The TEM consists of an emission source which is connected to a high voltage
source (typically ~100–300 kV) the gun will, given sufficient current,begin to
emit electrons either by thermionic or field electron emission into the vacuum.
This extraction is usually aided by the use of a Wehnelt cylinder. Once
extracted, the upper lenses of the TEM allow for the formation of the electron
probe to the desired size and location for later interaction with the sample.
Manipulation of the electron beam is performed using magnetic and electric
field.[8]
8. IR SPECTROSCOPY
Molecular bonds vibrate at characteristic frequencies. If a particular molecular
vibration results in a change in the bond's dipole moment, then the molecule
can absorb infrared radiation of that characteristic frequency, exciting that
vibration. Infrared spectroscopy is a sensitive technique to identify specific
functional groups in a molecule.
In IR spectroscopy the sample is irradiated with a broad band of infrared
frequencies, and the intensity of the reflected or transmitted infrared radiation
is measured as a function of frequency. From the knowledge of incident
intensity and reflected/transmitted intensity as a function of infrared
frequency, an infrared absorbance spectrum can be reconstructed. Absorption
at specific frequencies is characteristic of certain bonds. The IR spectrum is a
map of internal vibrational frequencies vs. intensity of interaction with IR
radiation. A vibration will be infrared active if the dipole moment of the
molecule or species changes during the vibration. In contrast, a vibration will
be Raman active if the polarizability changes during the vibration. The
frequency of a given vibration depends on the mass of the atoms involved and
the strength of the bond between them.
SYNTHESIS
1) Synthesis of 4-amino PDP
a)KOH, EtOH
b)Sulphanilic acid + NaNO2
c)Sodium dithionate
d)Acetic acid
1. DMF,K2CO3 NH
O NH OH
O
+ 2.KI (cat.),80 C
O
O
Br
H1 NMR of 4- amino PDP is done to check the purity of product obtained from column
chromatography. The compound obtained is relatively pure.
1.39
1.34
1.21
0.25
0.20
0.85
Normalized Intensity
0.15
0.10
7.04
7.20
6.58
7.32
10.85
9.23
2.41
7.67
4.37
9.39
9.16
3.21
0.05
1.68
6.67
0
1.71 0.55 1.09 2.23 4.19 5.16 2.32 1.66 3.53 1.88 17.83 27.13 2.98
11 10 9 8 7 6 5 4 3 2 1 0
Chemical Shift (ppm)
H1 NMR of diBoc-W-PDP-W is done to check the purity of product. The compound obtained is
relatively pure.
ANTIBIOTIC ASSAY
E.coli
Pseudomonas areginosa
Bacillus subtalis
Staphlococcus aureus
a b c
a
200
nm
TEM showing spherical aggregates for Trp-PDP-Trp (figure a and c) and Trp-
Hexyl-Trp (figure b)
CONCLUSION
The synthesized compound W-hex-W and W-PDP-W is quite pure as
interpreted from H1 NMR. Antibacterial properties were shown by both of
these compounds proving to be cytotoxic to bacteria. This property could be
used as a potential antibiotic. In the SEM analysis, spherical aggregates of W-
PDP-W and W-hexyl-W were seen suggesting that there might be a gelation
property of these compounds and if fine-tuned could be used in drug-delivery.
Tryptophan being fluorescent molecule, it could act as a potential probe to
study its antimicrobial mechanism inside the bacterial cell and track its path if
it is used a drug-deliverer.
REFERENCES
1) Archana A. Bele* and Anubha Khale (2001), AN OVERVIEW ON THIN LAYER
CHROMATOGRAPHY, International Journal Of Pharmaceutical Sciences And Research,8,256-
67
2) K. Subramani, W. Ahmed (2012), Self-Assembly of Proteins and Peptides and Their
Applications in Bionanotechnology and Dentistry, Emerging Nanotechnologies in Dentistry ,3,
4557-7862
3) Ranjith Reddy Kondeti*, Kranti Sri Mulpuri, Bharathi Meruga (2014), Advancements in column
chromatography: A review, World Journal of Pharmaceutical Sciences, 1-2, 2321-3310
4) Mohammed JS; A brief review on Ion Exchange Chromatography(2017); PharmaTutor; 5(2);
30-38
5) Md. JahaSultana, A Complete Review On Nuclear Magnetic Resonance (Nmr),
PHARMATUTOR-ART-2076.
6) Virdi et. al , MALDI-TOF mass spectrometry: an emerging technology for microbial
identification and diagnosis (2015),
7) Akhtar et al, Scanning Electron Microscopy: Principle and Applications in Nanomaterials
Characterization(2019), 10.1007
8) Tushar and Babita,Transmission Electron Microscopy- An Overview (2013), International
Research Journal for Inventions in Pharmaceutical Sciences,2, 2321-7855
9) Recent advances in cardanol chemistry in a nutshell:
10) John* et al, From a nut to nanomaterials (2013),Chem. Soc. Rev., ,
42, 427--438