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2. Biological Molecules
The cholera toxin is a protein and is composed of two subunits, A and B. Subunit A is made
from one polypeptide and subunit B is made from five identical polypeptides.
subunit A
subunit B
Fig. 3.1
(a) Name:
(i) the level of structure that is only shown by a protein that has more than one
polypeptide chain
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[Total: 10]
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[Total: 10]
9700/22/M/J/13
4 Polysaccharides are synthesised by condensation reactions between monosaccharide or
disaccharide subunits (monomers).
(a) Name the type of bond formed when polysaccharides are synthesised.
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Cellobiose, maltose, sucrose and trehalose are four different disaccharides found in
nature. Fig. 4.1 shows the molecular structure of these disaccharides.
Write the name of the disaccharides in the spaces provided on Fig. 4.1.
CH2OH H OH For
Examiner’s
O Use
H H H H
H OH H
OH H O HOH2C
OH OH
O
H OH H
A .........................................................
CH2OH CH2OH
O O
H H H H
H H
OH H O OH H
OH OH
H OH H OH
B .........................................................
CH2OH CH2OH
O O
H H OH
H H
O
OH H OH H
OH H H
H OH H OH
C .........................................................
CH2OH
O CH2OH O
H H H
H
OH H O H HO
OH CH2OH
H OH OH H
D .........................................................
[3]
Fig. 4.1
(a) Features of chitin and keratin are shown in the boxes in Fig. 2.1.
example: cellulose
triglyceride
amylopectin
collagen
Fig. 2.1
Write, in each box, the biological molecules from the list below that have the same
feature.
Each box may contain one, or more than one, biological molecule. The first box has
been completed as an example.
amylopectin
cellulose
collagen
haemoglobin
mRNA
triglyceride
[5]
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explanation
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Fig. 3.1 shows a molecule of α-glucose before being added to the end of a molecule of
amylose.
..... O OH H O OH H O OH H OH H
OH HO OH
H OH H OH H OH H OH
Fig. 3.1
(a) (i) Complete Fig. 3.1 to show how a molecule of α-glucose is added to the amylose.
[3]
(ii) Name the bond that forms between glucose molecules in polysaccharides, such as
amylose.
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Table 3.1
monomer α-glucose
branched or
unbranched unbranched
molecule
role in
energy storage
organisms
[3]
(i) State two ways that water is used in the leaf cell.
1. ........................................................................................................................................
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2. ........................................................................................................................................
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[2]
H O
H C O C
1
O
H C O C
O
H C O C
2
H
A
CH2OH H
O H
NH2
O C C N
N N H H HO H
H
–
CH
O OH H
N N HO OH H3C CH2
O P O CH2
O
O– CH3
H H H OH
H
OH OH
B C D
Fig. 1.1
(i) Name a polymer which can be formed only from many molecules of C.
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(ii) State one way, visible in Fig. 1.1, in which the part labelled 1 of molecule A differs from
the part labelled 2.
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1. ........................................................................................................................................
2. ........................................................................................................................................
[2]
[Total: 7]
3 There are many types of amino acids, but only twenty that are polymerised to make polypeptides
and proteins in animals.
(a) Name the type of chemical reaction that occurs when two amino acids form a dipeptide.
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(b) Fig. 3.1 shows two amino acids, glycine and valine. Use the space below to make a drawing
to show what happens when these two molecules join together to form a dipeptide.
glycine valine
H H O H H O
N C C N C C
H H O H H CH O H
H3C CH3
Fig. 3.1
[4]
3 (b) Fig. 3.1 is a diagram that highlights the tertiary and quaternary structure of a haemoglobin
molecule.
haem groups
Fig. 3.1
Explain how the tertiary and quaternary levels of protein structure of the haemoglobin
molecule contribute to its role in the transport of oxygen.
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a b
Fig. 2.2
Both animals live in northern countries of the world, where temperatures often drop below 0 °C.
(d) Describe the importance of water as an environment for the pond skater and the northern
pike.
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1 A student investigated growth in the roots of broad bean, Vicia faba. The student cut sections of
the root tip of this plant and viewed them with a light microscope.
Fig. 1.1 is a photomicrograph of one of the sections. The cell labelled D is in interphase.
H A
F C
Fig. 1.1 D
(a) Complete the table below by:
• naming the stages of mitosis in the correct sequence following interphase
• identifying one example from the cells labelled A to H that is in each stage of mitosis that
you have named.
[5]
(b) In animal cells, centrioles are responsible for assembling microtubules to make the spindle at
the beginning of mitosis.
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(c) State two roles of mitosis in plants and animals other than growth.
1 ................................................................................................................................................
2 ............................................................................................................................................[2]
4 (b) Carbonic anhydrase is an enzyme that is found in blood, liver and kidneys.
Fig. 4.2 shows a molecular model of this enzyme.
Fig. 4.2
(i) With reference to Fig. 4.2 and the parts labelled P and Q, explain the term secondary
structure.
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5 Fig. 5.1 shows a diagram of the molecular structures of tristearin (a triglyceride) and
phosphatidylcholine (a phospholipid).
H CH3
H C N+ CH3
H C H CH3
O P O–
H H H H H O
H C C C H H C C C H
O O O O O H
C OC OC O C OC O
tristearin
phosphatidylcholine
Fig. 5.1
(a) Table 5.1 shows a structural difference between the two molecules shown in Fig. 5.1.
Complete Table 5.1 with two further structural differences other than in numbers of different
types of atoms.
Table 5.1
length of fatty acid chains all the same length different lengths
[2]
(c) Water has many significant roles to play in cells and living organisms.
Complete Table 5.2 below by stating the property of water that allows each of the following to
take place.
Table 5.2
movement in xylem
[3]
[Total: 9]
4 Many microorganisms can digest cellulose by using a group of enzymes collectively known as
cellulases. Cellobiose is the disaccharide produced during cellulose digestion.
The cellulase known as β-glucosidase completes the digestion of cellulose by hydrolysing the
cellobiose molecule to produce two β-glucose molecules.
(a) Draw the ring structure of one β-glucose molecule in the space provided.
[2]
9700/02/SP/16
1 (c) (iii) Microtubules are composed of a globular protein known as tubulin.
Explain how the terms monomer and macromolecule can be applied to tubulin.
monomer ...........................................................................................................................
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macromolecule ..................................................................................................................
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2. Biological Molecules
© UCLES 2015 9700/22/M/J/15 Paper 2 - 19
5
(c) The parenchyma cells in Fig. 2.1 are packed with starch granules, which are used as energy
stores for the plant. The starch granules are not clearly visible in the section shown.
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(ii) Describe how the structure of starch makes it suitable for its function.
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[Total: 10]
For each statement, identify the most appropriate term that matches the description.
A The molecule formed from a condensation reaction between fructose and glucose.
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B The name of the bond broken when two amino acids are separated by hydrolysis.
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[5]
[Total: 5]
(a) (i) Draw the ring form of α-glucose in the space provided.
[2]
(ii) Glycogen synthase catalyses the formation of a covalent bond between two α-glucose
molecules during glycogen synthesis.
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(iii) Glycogen branching enzyme is another enzyme that is required for glycogen synthesis.
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ss
Trp Gly Ala
Lys Lys
Lys
Met Ile Cys
Arg Phe
Ala Arg
Asn Glu
Ala Gly
Ala Cys Arg Ser
Arg Leu
Leu Trp
s
Asn
Glu
s
Cys Ala
Phe
Arg Val Asn
Gly Trp Thr
Phe
Lys Val Ala
Gln
Ser Asp Gly Asp Asn
Val Gly Met Ala
Ile
Lys Thr
Asn
Lys Ser
Arg Gly Arg
Asn
Ala Pro
Leu Asn
Cys ss Cys
Thr
Thr
Asn Arg
Asn Asp
Val Gly
Gly
Ser Ile
Asn Ser
Ala Pro Asp Thr
Thr Cys ss Cys Asp
Ile Ser Trp Tyr
Asp Ala Trp Gly
Ser
Leu Arg
Ser Leu Ile
Ser Leu
Asn Ile Gln
Fig. 3.1
(a) (i) Name the two types of covalent bond in the structure in Fig. 3.1.
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(b) Lysozyme hydrolyses the β-1,4 glycosidic bonds present in compounds found in bacterial cell
walls.
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(ii) Suggest the type of biological molecule which is the substrate for lysozyme.
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2 (c) Amino acids synthesised in the mesophyll cells of leaves are also transported in phloem sap
to other locations where they are used to synthesise polypeptides.
Two amino acids are shown below. Describe the formation of a peptide bond between these
two amino acids. You may use the space below.
R R
H O H O
N C C N C C
H OH H OH
H H
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3 High fructose corn syrup, made from maize, can be used as a replacement for sucrose to sweeten
food and drink products.
Commercial production of high fructose corn syrup involves the enzyme glucose isomerase,
extracted from bacteria.
1 ................................................................................................................................................
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2 ................................................................................................................................................
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4 (d) Blood plasma contains approximately 90% water. Many of the properties of water are due to
its ability to form hydrogen bonds.
Outline how the properties of water make it ideal as the largest component of plasma.
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Complete Table 1.1 by using a tick (3) to indicate the features that apply to each polymer.
Table 1.1
contains nitrogen
Explain how the structure of a phospholipid molecule makes it suitable for its function in cell
membranes. You may label and annotate Fig. 1.1 as part of your answer.
Fig. 1.1
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2 The symptoms of cholera are caused by choleragen, a toxin released by the bacterium.
• a single copy of a polypeptide known as the A subunit that includes an extended alpha
helix
• five polypeptides that together make the B subunit.
The B subunit of choleragen binds to a cell surface membrane component, known as GM1, of an
intestinal epithelial cell. The complete choleragen protein then enters the cell by endocytosis. Once
inside the cell, the A subunit of the protein acts as an enzyme, disrupting the normal functioning of
the cell.
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constant region
Fig. 3.1
(a) State why the antibody molecule shown in Fig. 3.1 has quaternary structure.
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(a) Table 6.1 shows some features of an antibody molecule and a haemoglobin molecule.
Complete Table 6.1 to produce a summary of the features of the two molecules.
Table 6.1
fibrous or globular
[3]
4 (a) Complete Table 4.1 by using a tick (3) to indicate which statements apply to each of the
molecules. Use a cross (7) for statements that do not apply.
Table 4.1
contains phosphorus 3 7
found in plants
contains iron 7
Complete Fig. 4.1 to show how a peptide bond forms between these two amino acids.
H CH3
H O H O
N C C N C C
H OH H OH
H H
Fig. 4.1
[3]
6 (a) In the space below, draw a diagram to show a hydrogen bond between two water molecules.
[3]
(b) (i) Movement of water in xylem depends on the force of attraction between water molecules
as a result of hydrogen bonding.
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(ii) State the property of water that results in a cooling effect as water evaporates from the
surface of organisms.
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[Total: 5]
Describe how the three R groups in Fig. 4.1 can contribute to the globular structure of a
protein.
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(c) An example of a globular protein is the enzyme starch phosphorylase. This enzyme catalyses
the conversion of starch to glucose-1-phosphate.
Name the type of bond that is broken when starch is converted to glucose-1-phosphate.
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Fig. 2.1 shows the structure of one type of phospholipid known as phosphatidylcholine.
F1 and F2 are fatty acid residues.
CH3
H 3C N+ CH3 choline
CH2
CH2
O
O P O–
O
H 2C CH CH2
O O
O C C O
F1 F2
Fig. 2.1
(a) Phospholipase is an enzyme that can break down phospholipids. This enzyme is found in the
venom of some insects, such as bees.
Bee venom can destroy red blood cells, a condition known as haemolysis.
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(b) Compare, stating similarities and differences, the structure of the phosphatidylcholine shown
in Fig. 2.1 with the structure of a triglyceride molecule.
similarities .................................................................................................................................
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4 In very severe cases of cholera, antibiotics are also prescribed. The preferred antibiotic for
treatment of cholera is a single dose of doxycycline, a form of tetracycline antibiotic.
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CH2OH CH2OH
CH2OH O CH2OH O
H H H H
O H O H
OH OH OH
H O OH H lactase H OH H
OH + R + OH OH
OH H OH H
H H H H
H OH H OH
H OH H OH product S
lactose galactose
Fig. 3.1
(a) Describe the reaction that is catalysed by lactase. Use Fig. 3.1 to help you.
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Fig. 2.1 shows how sucrose is broken down in a reaction with hydrochloric acid.
CH2OH
O O
H H HOCH2 H
H
OH H O H HO
HO CH2OH
H OH OH H
+H2O
CH2OH
O O
H H HOCH2 H
H
OH H H HO
HO OH HO CH2OH
H OH OH H
A B
Fig. 2.1
(i) Name the products, A and B, of the reaction shown in Fig. 2.1.
A ........................................................................................................................................
B ........................................................................................................................................
[2]
(ii) Name the type of bond that is broken in the reaction shown in Fig. 2.1.
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(b) When Benedict’s solution is added to a sucrose solution and put into a boiling water-bath, no
change in colour is observed.
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E
A chemical group that is
not made from amino acids.
F
A form of secondary structure
found in the polypeptides in
haemoglobin.
G
Each polypeptide is folded
to form a complex
three-dimensional shape.
H
Each polypeptide is made
of a sequence of amino acids.
J
Each haemoglobin molecule
is composed of four polypeptides,
shown here by different shading.
Fig. 4.1
(a) State the term that matches each of the descriptions given in boxes E, F, G, H and J in
Fig. 4.1.
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F ...............................................................................................................................................
G ...............................................................................................................................................
H ...............................................................................................................................................
J ................................................................................................................................................
[5]
• A Gram-positive bacterium has a cell wall mainly composed of a thick layer of peptidoglycan
(murein).
• A Gram-negative bacterium has a more complex cell wall. This wall is composed of a much
thinner layer of peptidoglycan and an outer layer known as the outer membrane.
Fig. 3.1 is a diagram through the cell surface membrane and the cell wall of E. coli.
external environment
lipopolysaccharide
O antigen
(O polysaccharide)
outer
membrane
core polysaccharide
cell wall
lipid A
porin
peptidoglycan periplasm
(watery fluid
containing proteins)
cell surface
membrane
cytoplasm
Fig. 3.1
(a) The antibiotic penicillin kills bacteria by causing them to lyse (burst). It is more effective in
treating diseases caused by Gram-positive bacteria than diseases caused by Gram-negative
bacteria.
Outline how penicillin acts on bacteria and use Fig. 3.1 to suggest why penicillin has little or
no effect at treating diseases caused by Gram-negative bacteria, such as some strains of
E. coli.
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(c) Fig. 3.1 shows that the outer membrane of the cell wall of E. coli contains lipopolysaccharides.
These are not present in the cell surface membrane. Each lipopolysaccharide (LPS) consists
of a lipid and a polysaccharide portion.
The O antigen is the outer part of the polysaccharide portion of the LPS. It faces the aqueous
external environment.
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2 (c) Adipocytes synthesise triglyceride lipase (ATGL), an enzyme that catalyses the formation or
breakdown of triglycerides, as shown in Fig. 2.1.
lipase
triglyceride fatty acids + glycerol
Fig. 2.1
tissue hormone
fluid
cell surface
membrane
Fig. 2.2
(i) Name the type of bond broken by active ATGL to produce fatty acids and glycerol.
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CH2OH CH2OH
OH O H O H
H H
OH H O OH H
H H OH
H OH H OH
Fig. 2.1
(a) Name the type of bond that joins the two monosaccharides in lactose.
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(b) The enzyme lactase catalyses the breakage of the bond between the two monosaccharides
in lactose.
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(ii) Some people do not produce the enzyme lactase, so cannot digest lactose.
The presence of lactose in the lumen of the intestine reduces the volume of water
absorbed into the blood, resulting in diarrhoea.
Suggest why the presence of lactose in the intestine reduces the volume of water
absorbed.
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6 (a) Haemoglobin is a globular protein which is able to transport oxygen and is soluble in water.
(i) Explain how the structure of a haemoglobin molecule makes it able to transport oxygen
efficiently.
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(ii) Explain how the structure of a haemoglobin molecule allows it to be soluble in water.
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(i) Two amino acids are represented in the diagram in Fig. 2.1.
Complete the diagram to show how the two amino acids react together to form a
dipeptide.
R1 R2
H O H O
N C C + N C C
H H OH H H OH
Fig. 2.1
[3]
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H OH CH2OH H OH CH2OH
H H O H H O
O O O O O
H O H H O H
CH2OH H OH CH2OH H OH
Fig. 2.2
With reference to Fig. 2.2, state how the structure of a cellulose molecule differs from the
structure of an amylose molecule.
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[Total: 11]
(c) A ribbon structure of a molecule of carbonic anhydrase is shown in Fig. 2.2. The zinc ion is
associated with the active site of the enzyme and is essential for the enzyme to function.
zinc ion
Fig. 2.2
The molecule of carbonic anhydrase has primary, secondary and tertiary structure.
Explain the extent to which Fig. 2.2 shows the primary, secondary and tertiary structure of
carbonic anhydrase.
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5 Human prolactin (hPRL) is a globular protein. It is a single polypeptide composed of 199 amino
acids. The protein is transported in the bloodstream and has an effect only on cells that have a cell
surface membrane protein known as PRLR.
One effect of hPRL is to stimulate cells in the mammary glands to produce breast milk. Cells that
have been stimulated by hPRL need more glucose and therefore the passive uptake of glucose
increases.
(a) State one reason why the cells in the mammary glands that have been stimulated by hPRL
need more glucose.
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(b) An experiment was carried out to investigate the movement of glucose and hPRL across
Visking tubing membrane.
• A short section of Visking tubing, tied at both ends and containing distilled water,
was placed into a beaker containing a solution of glucose and hPRL.
• After 20 minutes, separate samples of the solution in the Visking tubing and the
solution in the beaker were each tested for the presence of protein and reducing
sugar.
A summary of the methods used, the experimental results and the deductions made are
shown in Table 5.1.
Table 5.1
solution
protein absent from
in Visking
biuret solution solution in Visking tubing
tubing
added to
solution in sample protein present in
beaker solution in beaker
solution Benedict’s
reducing sugar present in
in Visking solution
solution in Visking tubing
tubing added to
sample and
solution in mixture reducing sugar present in
beaker heated in a solution in beaker
water-bath
1 (a) Antibody molecules are proteins that show primary structure, secondary structure, tertiary
structure and quaternary structure.
Fig. 1.1
Describe how Fig. 1.1 shows the secondary structure and tertiary structure of the antibody
molecule.
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[3]
2 Linoleic acid is an unsaturated fatty acid that is found in some triglycerides and some phospholipids.
H
O
O C
H C H
H C H
H C H
H C H
H C H
H C H
H C H
H C
H C
H C H
H H H
C H H
H
H C C C C
C C
H H H H
H H
Fig. 2.1
(a) The composition of cell membranes of plants changes in response to changes in temperature.
At the start of the cold season there is an increase in the proportion of phospholipids with
unsaturated fatty acids in the chickpea, Cicer arietinum. Chickpea plants that do not make
this change do not survive.
Suggest how the increase in the proportion of phospholipids with unsaturated fatty acids
helps plants, such as chickpea, survive decreases in temperature.
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(b) (i) State why triglycerides and phospholipids cannot be described as polymers.
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[2]
(a) Fig. 5.1 is a list of biological molecules, some of which are components of larger molecules.
cellulose
thymine nucleotide
α-glucose
β-glucose
messenger RNA
glycogen
glycine
α-globin
Fig. 5.1
Complete Table 5.1 by using only the molecules listed in Fig. 5.1.
• All the examples in Fig. 5.1 should appear at least once in Table 5.1.
Table 5.1
examples
monomers polymers monosaccharides polysaccharides
[5]
(b) Explain how the structure of phospholipids allows the formation of the phospholipid bilayer of
cell membranes.
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[Total: 8]