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by Genetically Manipulated 7
and Metabolic Engineered
Cyanobacteria
Abstract
Direct conversion of carbon dioxide to valuable compounds is a desirable way to
reduce the environmental burden and switch from fossil to renewable fuels.
Cyanobacteria are photosynthetic bacteria that perform oxygenic photosynthesis
and are able to produce valuable compounds from carbon dioxide in the air.
Synechocystis and Synechococcus species, model unicellular cyanobacteria, can
produce succinate and lactate, which are commodity chemicals used to generate
bioplastics. Several cyanobacteria are also able to produce polyhydroxybutyrate,
a biodegradable polyester that accumulates under nitrogen or phosphorus starva-
tion. Genetic manipulation succeeded in increasing the productivity of succinate,
lactate, and polyhydroxybutyrate from cyanobacteria. We summarize the recent
findings in this review.
Keywords
Cyanobacteria · Lactate · Metabolic engineering · Polyhydroxybutyrate ·
Succinate
7.1 Introduction
[42]. Microalgae include eukaryotic algae and cyanobacteria and comprise a diverse
group of photosynthetic organisms that inhabit various ecological niches [57].
Cyanobacteria, previously called blue-green algae, are a group of bacteria that
includes nitrogen-fixing and non-nitrogen-fixing species that are characterized by
the possession of two photosystems: photosystem I and photosystem
II. Cyanobacteria are an ideal platform to produce biofuels and bulk chemicals
through efficient, natural CO2 conversion [55]. Model cyanobacteria such as
Synechocystis sp. PCC 6803 and Synechococcus sp. PCC 7002 and PCC 7942
(hereafter referred to as Synechocystis 6803, Synechococcus 7002, and
Synechococcus 7942, respectively) rapidly proliferate; their doubling times are in
the range of 3–6 h under optimal growth conditions [9]. The genome sequences of
Synechocystis 6803 and their sub-strains have been determined [35, 36]. In total, 86
complete and 290 draft genomes of cyanobacteria are available in the genome anno-
tation database CyanoBase (http://genome.microbedb.jp/cyanobase) [19], and the
metabolic pathways of cyanobacteria linked to genomic information can be searched
in the KEGG (Kyoto Encyclopedia of Genes and Genomes) database (http://www.
genome.jp/kegg/) [34]. In this review, we mainly focus on the unicellular, non-
nitrogen-fixing cyanobacteria Synechocystis 6803, Synechococcus 7002, and
Synechococcus 7942.
Understanding the primary carbon metabolism of unicellular cyanobacteria is
indispensable because they are the simplest organisms that perform oxygenic pho-
tosynthesis. Many researchers have studied carbon fixation and biosynthesis of gly-
cogen using cyanobacteria, whereas relatively few researchers have focused on
sugar catabolism in cyanobacteria because heterotrophic bacteria such as Escherichia
coli cannot fix CO2, even though sugar catabolic pathways seem to be conserved
among heterotrophic bacteria. Recently, however, much attention has been paid to
cyanobacterial sugar catabolism because of the demand for the generation of vari-
ous compounds from CO2. Fermentation in cyanobacteria is reviewed well by Stal
and Moezelaarat in a publication that appeared 20 years ago [72], and 10 years ago,
there was another review that dealt with cyanobacterial sugar catabolism [56].
Recently, many fine reviews of the biotechnological application and metabolic engi-
neering of cyanobacteria have been published [10, 11, 30, 54, 55, 68]. In this review,
we focus on metabolic engineering for the production of bioplastic compounds such
as succinate, lactate, and polyhydroxybutyrate. Because these metabolites are gen-
erated during pyruvate metabolism and the tricarboxylic acid (TCA) cycle, we first
explain pyruvate metabolism and the TCA cycle in cyanobacteria and then intro-
duce recent studies in metabolic engineering for bioplastic production.
Phosphoenolpyruvate Polyhydroxybutylate
pyk1, 2 Lactate
(sll0587, sll1275) phaC (slr1829)
pps ddh (slr1556) phaE (slr1830)
ppc (slr0301)
(sll0920) 3-Hydroxybutyryl-CoA
CO2 Pyruvate
phaB
pdhABCD Acetoacetyl-CoA (slr1994)
CO2 (slr1934, sll1721
sll1841, slr1096) phaA pta
me (slr1993) (slr2132)
(slr0721) Acetyl-CoA Acetyl-P ackA
(sll1299)
acs
Oxaloacetate (sll0542) Acetate
gltA
(sll0401)
citH Citrate Glutamine
(sll0891)
acnB Isocitrate icd gltB, gltD, glsF
(slr0665) (slr1289) (sll1502, sll1027,
Malate
sll1499)
2-Oxoglutarate
fumC
(slr0018) Succinyl-CoA
kgd Glutamate
sucC, sucD (sll1981)
(sll1023, sll1557) gad
Fumarate (sll1641)
sdhA, sdhB Succinate Succinic semialdehyde -Aminobutylate
gabD argD
(slr1233, sll0823, sll1625) (slr0370) (slr1022)
Fig. 7.1 Metabolic map of Synechocystis sp. PCC 6803. Metabolic map is drawn based of KEGG
database, and the gene number is derived from CyanoBase. P designates phosphate
carbon sinks in higher plants [13]; thus, these organic acids in the TCA cycle poten-
tially function as a carbon store in unicellular cyanobacteria during periods of nitro-
gen starvation.
During nitrogen starvation, 2-oxoglutarate accumulates and alters the gene
expression of enzymes in nitrogen metabolism pathways [52]. For example,
2-oxoglutarate directly upregulates transcriptional activity by binding to NtcA, a
global nitrogen transcription factor conserved among cyanobacteria [77]. In addi-
tion, 2-oxoglutarate controls the interactions between NtcA and the small protein
PipX, which functions as a co-activator of NtcA [16, 17]. NtcA and PipX widely
control gene expression related to nitrogen metabolism, carbon metabolism,
translation, transcription, and the cell cycle [18]. Manipulation of ntcA in
Synechocystis 6803 can alter primary carbon metabolism, amino acid levels, and
ethylene production [45, 61]; therefore, NtcA is important for primary metabolism
and metabolic engineering, and the levels of 2-oxoglutarate should be considered
during metabolic engineering.
Biochemical properties of enzymes in the TCA cycle have been studied in uni-
cellular cyanobacteria. NADP-isocitrate dehydrogenase (NADP-IDH) is an enzyme
that produces 2-oxoglutarate from metabolites derived through carbon fixation in
cyanobacteria [51]. NADP-IDH requires NADP+ as an electron acceptor and diva-
lent cations such as Mg2+ or Mn2+ for its enzymatic activity [51] and provides carbon
skeletons for nitrogen assimilation in cyanobacteria [51]. Succinate dehydrogenase
(SDH) provides electrons to the plastoquinone (PQ) pool, and its activity is domi-
nant particularly in dark conditions with cyanide [14]. Thus, SDH plays key roles in
carbon metabolism and redox maintenance in Synechocystis 6803 cells [15].
Phosphoenolpyruvate carboxylase (PEPC) is an important enzyme that catalyzes
irreversible carboxylation of phosphoenolpyruvate with bicarbonate to generate
oxaloacetate and inorganic phosphate in the presence Mg2+ [53]. Synechocystis
6803 PEPC is more tolerant of allosteric inhibition by several metabolites such as
malate, aspartate, and fumarate than other cyanobacterial PEPCs [75]. Takeya et al.
showed that a difference in allosteric regulation of PEPCs is determined by a single
amino acid residue at position 954 in Synechocystis 6803 [75]. In this way, bio-
chemical analyses have provided intriguing insights into the enzymes in the TCA
cycle of unicellular cyanobacteria.
Succinate is a metabolite in the TCA cycle that is generated from succinic semial-
dehyde by a succinic semialdehyde dehydrogenase through the oxidative TCA
cycle or from fumarate by a succinate dehydrogenase through the reductive TCA
cycle in cyanobacteria (Fig. 7.1). Succinate is a commodity chemical used as a
surfactant, ion chelator, and additive in agricultural products and food [2]. Succinate
is currently produced petrochemically to satisfy the demand in the chemical market
[47]. Succinate was identified as one of the twelve key building blocks of high-value
bio-based chemicals and materials, selected by the US Department of Energy [85].
7 Production of Bioplastic Compounds by Genetically Manipulated and Metabolic… 159
anaerobic conditions in the dark and that its synthesis was mediated by PEPC,
which catalyzes a reaction from phosphoenolpyruvate to oxaloacetate [21].
Overexpression of the gene encoding PEPC increases succinate production to
192 mg/L in the presence of 100 mM NaHCO3 [21].
Succinate and lactate production requires the reductant NAD(P)H in reactions
from oxaloacetate to malate and pyruvate to lactate, respectively. Synechocystis
6803 cells produce hydrogen (H2) in dark, anaerobic conditions, wasting excess-
reducing power and recycling NAD(P)H to NAD(P)+ [37]. In non-nitrogen-fixing
cyanobacteria, hydrogen is produced by a hydrogenase that consists of five subunits
of HoxEFHUY [12]. The HoxHY subcomplex exhibits hydrogenase activity to pro-
duce H2, and the HoxEFU subcomplex oxidizes NAD(P)H [12]. In Synechocystis
6803, a mutant with decreased levels of hoxH showed decreased hydrogen produc-
tion and decreased acetate production (to 100 mg/L), whereas succinate and lactate
production increased to approximately 100 mg/L and 300 mg/L, respectively, dur-
ing 3 days of incubation in dark, anaerobic conditions [27]. A hoxH mutant showed
increased levels of SigE proteins and accelerated sugar catabolism, indicating that
excess reductants are consumed through succinate and lactate production in this
mutant [27].
The introduction of external genes into cyanobacteria is also beneficial for
succinate production. Lan and Wei generated an engineered strain of Synechococcus
7942 that overexpressed kgd encoding a 2-oxoglutarate decarboxylase from
Synechococcus 7002 and gabD encoding a succinic semialdehyde dehydrogenase
derived from this gene in E. coli [39]. Succinate production titers from this
engineered strain reached 400 mg/L in 8 days under light, aerobic conditions [39].
This study opened the way for succinate production from cyanobacteria without
maintaining anaerobic conditions [39].
Lactate is widely used as a precursor for biodegradable plastics (polylactic acid,
PLA) and various chemicals. Integration of l-lactate dehydrogenase (LDH) from
Bacillus subtilis into Synechocystis 6803 enabled the cells to stably produce l-
lactate during batch culture [1, 3, 4]. Co-expression of genes encoding soluble
transhydrogenases additively increased lactate levels to 3.2 mM during 2 weeks
of cultivation [4]. These researchers also discovered that the downregulation of
glycogen biosynthesis and PEPC activity and the upregulation of pyruvate kinase
activity enhanced lactate production from Synechocystis 6803 cells [6, 82].
Joseph et al. introduced a lactate dehydrogenase from a lactic acid-producing
Lactobacillus species [31]. Co-overexpression of both lactate dehydrogenases and a
lactate transporter from L. plantarum (encoded by lldp) enabled Synechocystis 6803
cells to excrete l-lactate during photoautotrophic conditions [31]. The maximum
levels of secreted lactic acid reached 15.3 g/L (0.17 mM) at 18 days [31].
d-lactate is a chiral chemical used to synthesize PLA and various chemicals,
including cosmetics [41]. The physical properties of PLA are dependent on the opti-
cal purity of lactate; thus, the industry requires the production of optically pure
lactate [24]. Synechocystis 6803 cells can consume d-lactate but not l-lactate as a
carbon source because the genome contains d-lactate (rather than l-lactate) dehy-
drogenase (encoded by ddh, slr1556) [5]. Ddh of Synechocystis 6803 exhibits low
7 Production of Bioplastic Compounds by Genetically Manipulated and Metabolic… 161
enzymatic activity, and a ddh-overexpressing strain did not produce d-lactate [5].
Later, Synechocystis 6803 cells were found to produce lactate under dark, anaerobic
conditions [27, 64, 80], although the chirality of the lactate produced has not been
determined. Synechococcus 7002 cells produce d-lactate through autofermentation,
and knockout of nitrate reductase (encoding narB) enhances d-lactate twofold [66].
The introduction of d-lactate dehydrogenase makes unicellular cyanobacteria
produce d-lactate from CO2. Li et al. engineered Synechococcus 7942 to express
d-lactate dehydrogenase from Lactobacillus bulgaricus ATCC11842 to increase its
affinity for NADPH [41]. Introduction of this d-lactate dehydrogenase into
Synechococcus 7942 increased d-lactate production; d-lactate levels reached
798 mg/L after photoautotrophic incubation for 10 days [41]. Aeration at an
increased concentration of CO2 (continuously bubbling the air containing 5% (vol/
vol) CO2) further enhanced d-lactate production from the engineered strain; the titer
reached 1.31 g/L at 10 days [41].
Introduction of a mutated glycerol dehydrogenase (GlyDH*) from a Bacillus
species that produces optically pure d-lactate enhanced d-lactate production from
Synechocystis 6803 [83]. Co-overexpression of GlyDH* and transhydrogenase
(from Pseudomonas aeruginosa) enhanced d-lactate production to 1.14 g/L in pho-
toautotrophic conditions at 24 days of incubation [83]. The addition of acetate to the
medium further upregulated d-lactate production to 2.17 g/L at 24 days [83].
Utilization of anaerobic digestion is an environmentally preferable method for
waste treatment. Anaerobic digestion can provide carbon, nitrogen, and phosphorus
sources for use in microalgal cultivation. The addition of an anaerobic digestion
from the East Lansing Wastewater Treatment Plant (East Lansing, MI, USA) into
the culture medium increased d-lactate production from engineered Synechocystis
6803 cells; the titer reached 1.26 g/L at 20 days [25]. Photomixotrophic conditions,
therefore, may be used to produce d-lactate in cyanobacteria, although the risk of
contamination may be greater than that in photoautotrophic conditions.
Hirokawa et al. showed different ways of producing d-lactate from cyanobacte-
ria [24]. They introduced mgs, which encodes methylglyoxal synthase in E. coli, to
catalyze a reaction from dihydroxyacetone phosphate (DHAP) to methylglyoxal in
Synechococcus 7942, because DHAP is thought to be a metabolite at a high meta-
bolic flux rate in cyanobacteria in photoautotrophic conditions [24]. Methylglyoxal
is converted to s-lactoylglutathione by glyoxalase I (encoded by gloA), and
s-lactoylglutathione is converted to d-lactate by glyoxalase II (encoded by gloB).
Co-overexpression of mgs, gloA, gloB, and a gene encoding a lactate/H+ symporter
(lldP) from E. coli in Synechococcus 7942 enabled the cells to produce d-lactate at
a high titer (1.23 g/L at 24 days) [24].
Fig. 7.2 (a) Chemical structure of polyhydroxybutyrate. (b) Gene loci of phaAB and phaEC in a
Synechocystis sp. PCC 6803 genome
PHBV to 42% (w/w) of the dried cells [76]. Thus, their study opens the possibility
that cyanobacteria can be engineered to produce various PHAs, in addition to PHB.
7.5 Conclusion
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