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The world is diverse. Yet all organisms are united by a common heritage that began during the early years of our planet. Organisms
share a common chemistry, a genetic code, and basic life processes but what makes different is that all organisms are product of
evolutionary forces which shaped them differently over eons of time.
Living thing are linked in another way. Their existence depends on one another collectively formed a giant web of life
BIOLOGY study of life and is a subject that can help you know more about yourself and your relationship with other living and
non-living organisms and as well as the environment
CHARACTERISTICS OF LIFE
• Living Things Acquire Materials and Energy
• Living Things Respond
• Living Things Reproduce and Develop
• Living Things Have Adaptations
Major fields of Biology
CYTOLOGY study of cells
ANATOMY study of structure
ECOLOGY study of interrelationships between organisms and their environment
PHYSIOLOGY study of functions and activities of organisms
GENETICS study of heredity
TAXONOMY tasso= arrange, classify + nomos=usage, law
Disciplines of identifying and classifying organisms according to rules
CATEGORIES (D-K-P-C-O-F-G-S) also called “taxa”
Domain
Kingdom
Phylum
Class
Order
Family
Genus
Species
The broadest category is the DOMAIN and the narrowest is the SPECIES. From the most inclusive to the least inclusive taxa:
domain to species.
The system of classification developed by Carolus Linnaeus is a hierarchy or ranking system.
SCIENTIFIC METHOD
1. Observing and stating the problem
2. Forming a hypothesis
3. Testing the hypothesis
4. Recording and analyzing the data
5. Forming a conclusion
6. Replicating the work
7. Reporting/ Presentation of the Study
*Make observations-Formulate a hypothesis-Designed a controlled experiment-Collect data-Interpret data-Draw conclusions
Water the only substance that can exist naturally in all states of matter
Oxygen and carbon dioxide present as gases in the respiratory organs of the organism and in the tissue
fluids such as the blood and lymph
ORGANIC COMPOUNDS
• Carbohydrates
• Lipids
• Nucleic Acid
• Proteins
macromolecules composed of many subunits such as simple sugar, glycerol and fatty acids, nucleotide and amino acid.
these are called macromolecules because of their large size. You are very familiar with these molecules because certain foods are
known to be rich in them. When you digest these foods, they get broken down into the subunit molecules such as fatty acids,
monosaccharides, amino acids.
DNA - AGCT
RNA - AGCU
pyrimidine - C, T, and U
purine - A and G
• DNA deoxyribonucleic Acid
the genetic material that is transmitted from the parent to the offsprings from generation to generation.
contains all information that programs all cellular activities and characterizes each organism.
• Electron microscopes use electrons instead of visible light (photons) to image cells and cell structures.
• Electromagnets function as lenses in the electron microscope, and the whole system operates in a vacuum. Electron microscopes are
fitted with cameras to allow a photograph, called an electron micrograph, to be taken.
• The electron microscope. This instrument encompasses both transmission and scanning electron microscope functions.
Bright Field
Microscope field is brightly lit; objects under study are darker
Gross morphology
Dark Field
Background is black; object bright or luminous
For specimens that are
- Invisible in the ordinary light microscope
- Cannot be stained by standard methods
- Distorted by staining
UV
Make use of shorter wavelength of light (180nm – 400nm)
Images are made visible by recording on a photographic emulsion or by displaying on a TV screen
Detection of substances (e.g. DNA)
Fluorescence
Modification of UV microscope
Makes use of fluorochromes (fluorescent dyes)
Detection of immunological reactions – antigen-antibody reaction
Phase Contrast
Detailed examination of internal structure
Not necessary to fix or stain cells
Principles is based on variations in the refractive index
Three-dimensional imaging of cells. (a) Differential interference contrast and (b) atomic
force microscopy. The yeast cells in part a are about 8 um wide. The bacterial cells in part b are 2.2 m long and are from a biofilm that
developed on the surface of a glass slide immersed for 24 h in a dog’s water bowl.
TYPES OF ELECTRON MICROSCOPE
• The coarse focus knob is used to bring the object into approximate focus. For maximum definition, the fine focus knob is used.
Operation of the Microscope
1. Place the microscope close to the edge of the table. Select a suitable stool so that when looking into the eyepiece, your back
is straight and your neck is bent at the nape.
2. Lower the body tube by turning the coarse focus knob until the 10X or 16mm objective reaches the downward stop.
3. Look through the eyepiece and adjust mirror to the position which provides the brightest and most evenly illuminated field of
vision (the circular area seen in the eyepiece).
4. Place the slide on the stage and fasten it using the stage clips.
5. Position the specimen area of the slide over the center of the stage aperture.
6. Looking through the eyepiece, raise the coarse focus knob until the image appears. Focus sharply as possible.
7. Adjust the fine focus knob to sharpen the image in the center of the field of vision.
8. When a feature on the specimen is to be examined at a higher magnification, move the slide so that the feature is centered in
the field of vision. The higher the power of the objective, the lesser is the area to the specimen surface included in the field of
vision. Shift the high power objective into place and adjust with the fine focus knob.
9. Keep your eye at a certain distance from the eyepiece. Be relaxed when looking into the eyepiece and keep both eyes open.
Care of the Microscope
• Keep the microscope clean, dry and free from dust.
• When carrying the microscope, grasp its arm with one hand and the bottom of the base with the other hand.
• Avoid jarring the microscope
• Never touch the lenses with your fingers. Wipe dirty lenses gently with lens paper.
• Do not allow the objectives to come in contact with any liquid except immersion oil for the 1.8mm objective.
• Clean the oil immersion objective immediately after it has been used by removing the oil with lens paper. Dried oil on the
objective is removed by moistening the lens with xylol and then drying immediately with lens paper. Xylol is corrosive so the
lens should be wiped dry right away.
• Never force adjustments on the microscope. All adjustments should work freely and easily.
• Avoid unnecessary turning of the coarse and fine focusing knobs.
• Do not allow alcohol or xylol to come in contact with the lacquered parts.
• Before returning the microscope, see to it that the 16mm objective is in place, the body tube is fully lowered and the concave
mirror is turned upside down or vertically for double-sided mirrors.
CELL
Robert Hooke named cells as animalcules by observing a thin slices of cork
Anton van Leeuwenhoek perfected the construction of the compound microscope
Matthias Schleiden botanist concluded that plants are composed of cells and formulated the plant cell theory
Theodore Schwann zoologist concluded that animals are composed of cells and formulated the animal cell theory
Rudolf Virchow pathologist concluded that all cells must come only from preexisting cells
CELL THEORY
Tenets of Cell Theory
• The cells contain hereditary information (DNA) which is passed on from cell to cell during cell division.
• All cells are basically the same in chemical composition and metabolic activities.
• All basic chemical and physiological functions are carried out inside the cells. (movement, function, etc.)
• Cell activity depends on the activities of subcellular structures within the cells (organelles, nucleus, plasma membrane)
Cell Types
PROKARYOTIC CELLS
EUKARYOTIC CELLS
Endoplasmic Reticulum it is a system of communicating membranous tubules, vesicles, and flattened vesicles (cisternae)
Rough ER membranous sheet of flattened tubules and vesicles with ribosomes on the surface
functions:
Functions: Chemical work – ATP supplies the energy needed to synthesize macromolecules that make
up the cell
Transport work – ATP supplies the energy needed to pump substances
across the plasma membrane.
Mechanical work – ATP supplies the energy needed to permit muscles to
contract, cilia and flagella to beat, chromosomes to move, and so forth.
PHOTOSYNTHESIS The Light Reactions and the Dark Reactions (Calvin Cycle)
LIGHT REACTIONS During photosynthesis light energy from the sun is converted into chemical energy in the form of ATP
and glucose
autotrophs (plants, algae and some bacteria)
heterotrophs (animals, fungi and some bacteria)
Photosynthesis involves the use of light energy to convert water and carbon dioxide into oxygen and glucose
The Light Dependent Reactions Light energy is converted into chemical energy which is temporarily stored in ATP and
NADPH
The Light Independent Reactions Sugars are formed using carbon dioxide and the chemical energy stored in ATP and
NADPH
CELL CYCLE
The cell cycle is an orderly set of stages that take place between the time a eukaryotic cell divides and the time the resulting daughter
cells also divide. When a cell is going to divide, it grows larger, the number of organelles doubles, and the amount of DNA doubles as
DNA replication occurs. The two portions of the cell cycle are interphase which includes a number of stages, and the mitotic stage,
when mitosis and cytokinesis occur.
4 phases of cell cycle
G-1
S
G-2
M
You will notice that most of the cell cycle is spent in interphase. This is the time when a cell performs its usual functions, depending on
its location in the body. The amount of time the cell takes for interphase varies widely. Some cells, such as nerve and muscle cells,
typically do not complete the cell cycle and are permanently arrested. These cells are said to have entered a Go stage. Embryonic cells
complete the entire cell cycle in just a few hours. For adult mammalian cells, interphase lasts for about 20 hours, which is 90% of the
cell cycle. Interphase is very busy and consists of three stages referred to as G1, S, and G2.
Cell biologists named the stage before DNA replication G1, and they named the stage after DNA replication G2. G stood for “gap”, but
now that we know how metabolically active the cell is, it is better to think of G as standing for “growth”. Protein synthesis is very much
a part of these growth stages.
G1 Stage
the first gap period and the longest phase
the cell increases in volume by imbibing water and nutrients and building new protoplasm and cytoplasmic organelles
secretion granules, storage granules and cell wall materials are also elaborated
S Stage
DNA replication or synthesis is the most important activity in the cell
G-2 Stage
second gap period
characterized by the synthesis of RNA and proteins necessary for chromosome synthesis and for the mitotic spindle
Shorter than the G-1 and S Phases
M phase (Mitosis)
Substages:
- Prophase
- Metaphase
- Anaphase
- Telophase
Prophase
• DNA molecules thicken by coiling on themselves several times to form dense chromosomes.
• The nucleolus gradually disappears.
• The nuclear membrane breaks down during late prophase
Metaphase
• spindle fibers appear
• the chromosomes now arrange themselves on the equatorial plane of the cell
• chromatids attach to the spindle fibers
Anaphase
• Chromatids separate and begin to move to opposite ends of the cell.
Telophase
• the divided chromosomes have reached the opposite poles of the cell
• the chromosomes aggregate and begin to uncoil into long, thin chromatin strands
• the nuclear envelope and the nucleolus re-form
• the cell returns once again to G1 of the cell cycle
Cytokinesis
• a new cell wall, called the cell plate, starts to form between the separated nuclei.
- Involves the phragmoplast, consisting of a band of microtubules that re-forms perpendicular to the cell plate and many small
membrane-bound vesicles.
Meiosis 2n (diploid) n (haploid)
Meiosis
Special kind of cell division in sexually reproducing organisms, whereby the chromosome number of the cells is reduced to half
its usual number.
For the production of male and female gametes.
Preceded by G-1,S and G-2 phases.
Consists of two nuclear divisions: Meiosis I and Meiosis II.
2 Phases Meiosis I (reductional) Meiosis II (equational)
Prophase II Prophase II is Similar to mitotic prophase except that it has half the chromosome number. During prophase II, each dyad
is composed of one pair of chromatids attached by a common centromere.
Metaphase II During metaphase II, the centromeres are directed to the equatorial plate. Then the centromere divides.
Anaphase II During anaphase II the chromatids of each dyad are pulled opposite poles.
Telophase II Telophase II reveals one member of each pair of homologous chromosomes present at each pole as the number of
dyads is equal to the haploid number. Each chromosome is referred to as a monad. Not only has the haploid state been
achieved, but most monads that have been involved in crossing over display a combination of maternal and paternal
genetic information.
As a result, the offspring produced by any gamete will receive from it a mixture of genetic information of
originally present in his or her grandparents. Following cytokinesis in telophase II, potentially four haploid
gametes may result from a single meiotic event.
Spermatogenesis takes place in the testes
Oogenesis occurs in the ovaries