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Lecture Notes in Bioinformatics

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12 authors, including:

Carla-Fabiana Chiasserini Daniele Manini

Politecnico di Torino Università degli Studi di Torino
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Matteo Sereno Lucia Napione

Università degli Studi di Torino Politecnico di Torino
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Information Theory Enabled Secure Wireless Networking: Scaling Laws, Network Control, and Implementation View project

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Journals

• M. Gribaudo, D. Manini, B. Sericola, M. Telek, "Second Order Fluid Models with

General Behaviour" Annals of Operations Research - Vol. 160 - Number 1 - Pages
69-82 (April 2008)

• R. Gaeta, C.F. Chiasserini, M. Garetto, M. Gribaudo, D. Manini, M. Sereno, "Fluid

Models for Large-Scale Wireless Sensor Networks" Performance Evaluation
Journal - Vol. 64 - Issue 7-8 - Pages 715-736 - (August 2007).

• R. Gaeta, M. Gribaudo, D. Manini, M. Sereno, "Analysis of Resource Transfer in

Peer-to-Peer File Sharing Applications using Fluid Models" Performance
Evaluation Journal - Peer-to-Peer Computing Systems, Vol. 63, Issue 3, Pages 147-
264, (March 2006).

Lecture Notes in Bioinformatics

• L. Napione, D. Manini, F. Cordero, A. Horvath, A. Picco, M. De Pierro, S. Pavan, M.

Sereno, A. Veglio, F. Bussolino and G. Balbo "On the use of Stochastic Petri Nets in
the analysis of a signal transduction pathways for angiogenesis process" (CMSB
2009) LNBI 5688, pp. 281–295, Springer-Verlag Heidelberg 2009.

Lecture Notes in Computer Science

• D. Manini, M. Gribaudo, "An Analytical Study of the Resource Diffusion in Non-

homogeneous P2P networks" Lectures Notes in Computer Science, vol. 5055. pp.
88-100, Springer 2008

• R. Gaeta, M. Sereno, D. Manini, "Stochastic Petri Nets models for the performance
analysis of TCP connections supporting finite data transfer" Lectures Notes in
Computer Science, vol. 2601. pp. 372-391, Springer 2003.

• R. Gaeta, M. Gribaudo, D. Manini, M. Sereno, "On the Use of Petri Nets for the
Computation of Completion Time Distributon for Short TCP Transfers" Lectures
Notes in Computer Science, vol. 2679, pp. 181-200, Springer 2003.

Electronic Notes in Theoretical Computer Science

• R. Gaeta, M. Gribaudo, D. Manini, M. Sereno, "FSPNs for Computing Transfer

Time Distributions in P2P" Electronic Notes in Theoretical Computer Science, Vol.
128, Issue 4, Pages 79-99, Elsevier 2005.

Conferences, Workshops and Symposiums

• M. Gribaudo, D. Manini, A. Nordio, C.F. Chiasserini, "Analysis of IEEE 802.15.4

Sensor Networks for Event Detection" accepted to IEEE Globecom 2009 Ad Hoc,
Sensor and Mesh Networking Symposium.
 • F. Cordero, D. Manini, M. Gribaudo, "Modeling Biological Pathways: an Object-
oriented like Methodology Based on Mean Field Analysis" accepted to The Third
International Conference on Advanced Engineering Computing and Applications in
Sciences ADVCOMP 2009.

• A. Horvath, D. Manini, "Parameter Estimation of Kinetics Rates in Sthocastic

Reaction Networks by the EM Method" Proc. of the IEEE International Conference
on Biomedical Engineering and Informatics BMEI 2008, Sanya, China

• D. Manini, M. Gribaudo, "Modelling Search, Availability, and Parallel Download

in P2P File Sharing Applications with Fluid Model" Proc. of the 14th International
Conference on Advanced Computing and Communication ADCOM 2006,
Mangalore, India.

• R. Gaeta, M. Gribaudo, D. Manini, M. Sereno, "Fixed Point Approximations for TCP

Behaviour in Networks of Routers Implementing Heterogeneous Queue
Management Policies" Proc. of the 13th Conference on Measurement, Modeling,
and Evaluation of Computer and Communication System, MMB 2006, Nurnberg,
Germany.

• D. Manini, R. Gaeta, M. Sereno, "Performance Modeling of P2P File Sharing

Applications" FIRB-PERF Workshop on Techniques, Methodologies and Tools for
Performance Evaluation Of Complex Systems 2005, Torino, Italy.

• M. Gribaudo, R. Gaeta, C.F. Chiasserini, M. Garetto, D. Manini, M. Sereno, "A

Spatial Fluid-based Framework to Analyze Large-Scale Wireless Sensor
Networks" Proc. of the International Conference on Dependable System and
Networks (DSN) 2005, Tokyo, Japan.

• R. Gaeta, M. Gribaudo, D. Manini, M. Sereno, "A GSPN Model for the Analysis of
DNS-Based Redirection in Distributed Web Systems" Proc. of the 12th Annual
Meeting of the IEEE Intern. Symp. on Modeling, Analysis, and Simulation of
Computer and Telecommunication Systems (MASCOTS) 2004, Volendam,
Netherlands .

• D. Manini, "Performance Evaluation in Overlay Communication Networks" in

Supplemental Volume of the International Conference on Dependable Systems and
Networks (DSN) 2004, Florence, Italy.

• R. Gaeta, D. Manini, M. Sereno, "Simulation based analysis of completion time

distribution for short-lived TCP flows" Proc. of the Intern. Symp. on Performance
Evaluation of Computer and Telecommunication Systems (SPECTS), pp. 27-36, SCS
Editor, Montreal, Canada, July 20-24 2003.

Technical Reports

• D. Manini, L. Sauro, "Considering Performability in File Sharing Peer-to-Peer

System" 2005 Università di Torino, Dipartimento di Informatica, Technical Report
RT 84/05

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