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observed as a singlet in the 1H NMR spectrum (Table 1, palladium(II) dichloride [PdCl2(dppf)] and potassium acetate
Figures S1 and S2). These findings together with MS analysis resulted in the synthesis of diboronate 3.17 Successive Suzuki−
Miyaura cross-coupling of 1-Boc-3-bromoindole with catalytic
Table 1. 1H (500 MHz) and 13C (125 MHz) NMR Data of PdCl2(dppf) and potassium carbonate gave bisindolyl com-
Tricepyridinium in CD3OD pound 4.18 After deprotection of the Boc group, the resulting 5
was treated with 3-(2-bromoethyl)indole at 90 °C for 42 h to
tricepyridinium (1)
give the desired 1-[2-(3-indolyl)ethyl]-3,5-di(3-indolyl)-pyridi-
position δC, type δH (J in Hz) HMBC nium (1) as a bromide salt (1b). As expected, all the
1 spectroscopic data for synthetic 1 were identical to those of
2, 6 136.2, CH 8.49, 2H, s 2 (6), 3′, 9′ the bacterial product. Thus, the chemical structure of 1 was
3, 5 137.0, C confirmed to be 1-[2-(3-indolyl)ethyl]-3,5-di(3-indolyl)-pyridi-
4 135.7, CH 8.78, s 2 (6), 3′ nium, which we named tricepyridinium. In addition, we
1′ (NH) synthesized pyridinium derivatives with two indole moieties
2′ 126.0, CH 7.70, 2H, s 3 (5), 3′, 3a′, 7a′ (6 and 7), a monoindolylpyridine derivative (8), and
3′ 109.3, C pyridinium derivatives with one indole moiety (9 and 10) to
3a′ 124.1, C investigate structure−activity relationships (Figure 1 and
4′ 118.0, CH 7.39, 2H, d (7.6) 3a′, 6′, 7a′ Supporting Information).
5′ 121.1, CH 7.14, 2H, dd (7.4, 7.6) 3a′, 7′
6′ 122.5, CH 7.22, 2H, dd (7.4, 7.9) 4′, 7a′
7′ 112.0, CH 7.47, 2H, d (7.9) 3a′, 5′
7a′ 137.6, C
1″ (NH)
2″ 124.0, CH 7.01, s 3″, 3a″, 7a″
3″ 108.4, C
3a″ 126.7, C
4″ 117.4, CH 7.53, d (7.6) 3a″, 7a″
5″ 119.3, CH 7.06, dd (7.4, 7.6) 3a″, 7″
6″ 121.9, CH 7.18, dd (7.4, 7.9) 4″, 7a″
7″ 111.7, CH 7.34, d (7.9) 3a″, 5″
7a″ 136.9, C Figure 1. Chemical structures of synthetic tricepyridinium analogues.
8″ 27.4, CH2 3.58, 2H, t (4.8) 2″, 3″, 3a″
9″ 62.5, CH2 5.00, 2H, t, (4.8) 2 (6), 3″
The antimicrobial activity of 1 was investigated by measuring
indicated that 1 was 1-[2-(3-indolyl)ethyl]-3,5-di(3-indolyl)- the minimum inhibitory concentration (MIC) according to the
pyridinium, which has never been isolated previously. Clinical & Laboratory Standards Institute (CLSI) protocol.19
To confirm the structure of 1 and evaluate its biologically Tricepyridinium bromide (1b) displays significant antibacterial
activities, we chemically synthesized 1. Three indole moieties activity against Bacillus cereus with an MIC value of 0.78 μg/mL
were introduced in two steps via Suzuki−Miyaura cross- and methicillin-sensitive Staphylococcus aureus (MSSA) with an
coupling and an SN2 reaction of an alkyl bromide, as shown in MIC value of 1.56 μg/mL as well as moderate antifungal
Scheme 1. Using 3,5-dibromopyridine 2 as a starting material, a activity against Candida albicans with an MIC value of 12.5 μg/
diborylation reaction by cross-coupling of bis(pinacolato)- mL with no activity against E. coli at 100 μg/mL, as shown in
diboron with catalytic [1,1′-bis(diphenylphosphino)ferrocene]- Table 2.
Table 2. Antimicrobial Activities of Tricepyridinium in the fosmid containing the metagenomics gene cluster
Bromide and Its Analogues (pDC113) based on our previous research,12 the genes
responsible for the biosynthesis of 1 remain elusive.
MIC [μg/mL]
Unfortunately, it is difficult to completely eliminate the
compound B. cereus S. aureus (MSSA) C. albicans E. coli (W3110) possibility at this time that tricepyridinium is nonenzymatically
1b 0.78 1.56 12.5 >100 synthesized.24 We propose that the introduction of the fosmid
5 50.0 50.0 50.0 >100 stimulated an endogenous biosynthetic pathway to tryptamine
6b 1.56 1.56 25.0 100 in the host E. coli cells. Notably, tryptamine and formaldehyde,
7b 25.0 50.0 100 >100 which are toxic to the E. coli host, are consumed to produce
8 >100 100 100 >100 tricepyridinium (1) that can be exported as a possible
9b >100 >100 100 >100 detoxification mechanism. Intriguingly, the released tricepyr-
10b >100 >100 100 >100 idinium (1) exhibits significant toxicity to other micro-
ampicillin 0.063 0.50 100 4.00 organisms but not to the E. coli producer. The discovery of
novel compound 1 demonstrates that transformation of an
The synthetic analogues with two indole moieties (5, 6b, and environmentally derived DNA library is a useful approach to
7b) exhibited antimicrobial activity against B. cereus, MSSA, and induce serendipitous synthesis of small molecules in a host
C. albicans, but the intensities of 5 and 7b were much weaker organism.
than that of 1b. Intriguingly, the 1-ethylpyridinium analogue In this study, we isolated a novel pyridinium with three
with two indole moieties (6b) exhibited antimicrobial activity indole moieties, tricepyridinium (1), from E. coli transformed
not only superior to all synthetic analogues, comparable to that with metagenomic libraries of D. calyx, based on functional
of 1b, but also weak activity against E. coli with an MIC value of screening. Tricepyridinium (1) possessed three unsubstituted
100 μg/mL. In contrast, the synthetic analogues with one indole moieties and exhibited antibacterial activity, but not
indole moiety (8, 9b, and 10b) exhibited no or only weak against E. coli, antifungal activity, and cytotoxicity against P388
antimicrobial activity with the MIC value of 100 μg/mL. cells. All three indoles contributed to these activities. In
Subsequently, we tested the toxicity of these compounds contrast to antimicrobial activity, elimination of the indole
against the murine leukemic cell line P388. Compound 1b had group at the 8″-position (6b) resulted in more potent
cytotoxicity to P388 cells with an IC50 value of 0.53 ± 0.07 μg/ cytotoxicity against P388 cells than that of tricepyridinium
mL (1.0 ± 0.1 μM). Interestingly, the 1-ethylpyridinium bromide (1b). It was demonstrated in this study that the
analogue with two indole moieties (6b) exhibited the most synthesis of tricepyridinium (1) is feasible and that three indole
potent cytotoxicity to P388 cells with the IC50 value of 0.093 ± moieties are easily substituted with similar derivatives using our
0.029 μg/mL (0.22 ± 0.07 μM), whereas the other analogues synthetic scheme. The biological activity of 1 can be expected
showed weaker cytotoxicity than that of 1b (Table S1). to significantly improve through future structure−activity
relationship studies.
■
These results indicated that the three indole moieties of 1
and the charged pyridinium were chiefly responsible for the
high cytotoxicity toward Gram-positive bacteria and fungi. In EXPERIMENTAL SECTION
particular, the indole group at the 3- or 5-position was more General Experimental Procedures. The UV spectrum was
crucial than an indole group at the 8″-position. Previous recorded on a Shimadzu UV-1280 spectrophotometer. The IR
structure−activity relationship studies on pyridinium com- spectrum was recorded on a JASCO FT/IR-4100 spectrometer with
pounds demonstrated that 1-alkylpyridinium compounds CaF2 plates. NMR spectra were recorded on a JEOL ECX-500 or
generally exhibited antimicrobial activity.20−23 However, ECA-500 spectrometer (1H NMR: 500 MHz; 13C NMR: 125 MHz)
with either TMS (at 0.0 ppm) or residual solvent peaks with specific
previous studies also revealed that the hydrophobic alkyl shift values as an internal standard (CDCl3: δH 7.26, δC 77.1; CD3OD:
chain could improve antimicrobial activity in most cases up to δH 3.31, δC 49.0). ESI-HRMS analysis was performed with a Bruker
an alkyl chain having 18 carbon atoms, and the 1- Compact QqTOF mass spectrometer. HPLC was performed on a
alkylpyridinium compounds exhibited broad-spectrum anti- Shimadzu LC-20A system using an ODS column (4.6 × 250 mm,
microbial activity including against E. coli. Actually, the 1- COSMOSIL 5C18-PAQ, NACALAI TESQUE, Inc.). Solvents and
ethylpyridinium analogue (6b) exhibited weaker antimicrobial chemicals were purchased from Wako Pure Chemical Industry, Kanto
activity against B. cereus and C. albicans but stronger activity Chemical Co., Inc., or Sigma-Aldrich JAPAN unless otherwise noted.
against E. coli compared to that of 1b. Therefore, tricepyr- Preparation of E. coli EPI300 Clone pDC113. The preparation
idinium (1) is likely to be a unique antimicrobial agent with a of the metagenomic DNA library from the marine sponge was
previously reported.13,14 Briefly, metagenomic DNA was prepared
different mechanism of action from typical 1-alkylpyridinium from the marine sponge D. calyx collected at Shikine-jima Island in
compounds. In contrast to antimicrobial activity, the presence Japan, and then the DNA fragments larger than 35 kbp were separated
of the indole group at the 8″-position does not enhance from the total DNA by agarose gel electrophoresis. The DNA was
cytotoxicity against P388 cells. This structure−activity relation- blunt-ended, ligated into the pCC1FOS fosmid vector, and packaged
ship assessment indicated that the two indole moieties played a to transfect E. coli according to the manufacturer’s instructions
concerted role with the 1-ethylpyridinium moiety to induce (Epicenter). The packaged vector was transformed into E. coli EPI300-
cytotoxicity of P388 cells. It is remarkable that a molecule with T1R, and the cells were plated on LB agar containing chloramphenicol
three simple indole moieties displays high bioactivities, and the (12.5 mg/L) as a selection marker according to the manufacturer’s
synthetic route we established is highly applicable to instructions (Epicenter).
Purification of Tricepyridinium Acetate (1a). After incubation
preparation of its derivatives. of the clone pDC113 in LB medium supplemented with
The biosynthesis of 1 is predicted to involve tryptamine and chloramphenicol (12.5 mg/L) at 30 °C and 120 rpm for 3 days, the
formaldehyde precursors (Scheme S1), and the three indole broth was subjected to solid phase extraction with Diaion HP-20 resin
rings are likely derived from three tryptamines. Because an (Mitsubishi Chemical Corp.) and then eluted with MeOH. The eluent
ORF involved in the biosynthesis of tryptamine is not present was purified by HPLC on an ODS column (Cosmosil COSMOSIL
5C18-PAQ, Nacalai Tesque), eluting with a gradient system from H2O 7.4, 7.6 Hz), 7.06 (1H, dd, J = 7.4, 7.6 Hz), 5.00 (2H, t, J = 4.8 Hz),
to MeOH containing 0.1% acetic acid to give compound 1a as a white 3.58 (2H, t, J = 4.8 Hz); 13C NMR (125 MHz, CD3OD) δC 137.6,
powder (0.76 mg/L broth). UV (MeOH) λmax (log ε) 224 (5.47), 261 137.0, 136.9, 136.2, 135.7, 126.7, 126.0, 124.1, 124.0, 122.5, 121.9,
(5.13), 279 (5.13), 324 (5.19), 394 (sh) (4.60) nm; IR (CaF2) νmax 121.1, 119.3, 118.0, 117.4, 112.0, 111.7, 109.3, 108.4, 62.5, 27.4;
3181, 1589, 1537, 1455, 1430, 1338, 1245 cm−1; 1H NMR (500 MHz, HRESIMS m/z 453.2075 [M]+ (calcd for C31H25N4, 453.2074).
CD3OD) δH 8.77 (1H, s), 8.47 (2H, s), 7.68 (2H, s), 7.51 (1H, d, J = Antimicrobial Activity. According to the CLSI protocol,19 the
7.6 Hz), 7.46 (2H, d, J = 7.9 Hz), 7.40 (2H, d, J = 7.9 Hz), 7.37 (1H, turbidity of suspensions of E. coli W3110, MSSA1, B. cereus, and C.
d, J = 7.9 Hz), 7.22 (2H, dd, J = 7.4, 7.9 Hz), 7.13 (2H, dd, J = 7.4, 7.9 albicans was adjusted to 0.5 McFarland, respectively, in PBS(−) and
Hz), 7.05 (1H, dd, J = 7.4, 7.6 Hz), 4.99 (2H, t, J = 4.8 Hz), 3.57 (2H, then diluted 300-fold with growth medium (Mueller Hinton Broth,
t, J = 4.8 Hz), 1.87 (3H, s); 13C NMR (125 MHz, CD3OD) δC 174.7, Sigma-Aldrich) for E. coli, MSSA, and B. cereus, Roswell Park Memorial
137.9, 137.54, 137.49, 136.8, 136.5, 127.1, 126.3, 124.6, 124.4, 122.9, Institute 1640 medium (RPMI 1640, Sigma-Aldrich) with glutamine,
122.3, 121.4, 119.7, 118.3, 117.8, 112.4, 112.4, 109.8, 108.8, 62.9, 27.8, without sodium bicarbonate, with 2% (w/v) glucose, and with phenol
23.1; HRESIMS m/z 453.2072 [M]+ (calcd for C31H25N4, 453.2074). red, buffered to pH 7.0 with MOPS at 165 mM for C. albicans) in 96-
Synthetic Protocols for Tricepyridinium (1). Synthesis of 3,5- well plates. Each well contained serially diluted solutions of the
Bis(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)pyridine (3). To a compounds. Final culture volume for each well was adjusted to 100
solution of 3,5-dibromopyridine (2) (1.39 g, 5.87 mmol) in 1,4- μL, and after 20 h (24 h for C. albicans) incubation at 37 °C, MICs
dioxane (50 mL) were added bis(pinacolato)diboron (3.42 g, 13.5 were scored visually. Ampicillin was used as a positive control.
mmol), KOAc (3.45 g, 35.2 mmol), and [1,1′-bis- Cell Culture and Cytotoxic Activity. The murine leukemic cell
(diphenylphosphino)ferrocene]dichloropalladium(II) [PdCl2(dppf)2] line P388 was maintained in Dulbecco’s modified Eagle medium
(341 mg, 0.418 mmol). After the reaction mixture was stirred at 85 °C supplemented with 10% fetal bovine serum (MP Biomedicals) and
for 19 h, it was concentrated on a rotary evaporator. After the residue 1.0% penicillin (10,000 U/mL)-streptomycin (10 mg/L). Cytotoxicity
was suspended in CH2Cl2, the suspension was filtered. The filtrate was of the compounds was evaluated via MTT assay based on
concentrated on the rotary evaporator to give a black solid. After the mitochondrial succinate dehydrogenase activity and confirmed via
solid residue was dissolved in H2O containing formic acid (pH 1), the microscopic observation. At the end of the incubation, 15 μL of 3-(4,5-
aqueous solution was washed with EtOAc. The aqueous solution was dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) at 5.0
evaporated to give 3 (1.38 g, 4.17 mmol, 71%) as a brown powder, mg/mL was added to each of the wells. The cultures were incubated
which was used without any further purification. 1H NMR (500 MHz, for another 3 h before the cell supernatants were removed. After the
CDCl3) δH 8.87 (3H, s), 1.20 (24H, s); 13C NMR (125 MHz, CDCl3) removal of the cell supernatants, 100 μL of dimethyl sulfoxide was
δC 156.2, 149.5, 128.2, 84.3, 24.7. Unfortunately, HRESIMS could not added to each well to dissolve the formed formazan. The optical
be obtained. density was measured using a microplate reader (Bio-Rad) at 550 nm
Synthesis of 3,5-Bis(1-Boc-indol-3-yl)pyridine (4). To a solution of with reference wavelength at 700 nm. Cisplatin and doxorubicin were
3 (231 mg, 0.698 mmol) in DMSO (7.0 mL) were added 1-Boc-3- used as positive controls.
bromoindole (496 mg, 1.67 mmol), K2CO3 (964 mg, 6.98 mmol), and
PdCl2(dppf)2 (57.0 mg, 69.8 μmol). After the mixture was stirred at 90
°C for 2 h, it was quenched with H2O and filtered through Celite to
remove the palladium catalyst. The filtrate was extracted with EtOAc,
■
*
ASSOCIATED CONTENT
S Supporting Information
washed with saturated aqueous NaCl, dried over Na2SO4, and The Supporting Information is available free of charge on the
evaporated. The residue was purified by silica gel column ACS Publications website at DOI: 10.1021/acs.jnat-
chromatography (hexane/acetone = 15:1 to 10:1) to give a mixture prod.6b01152.
of dindolyl/monoindolyl compounds in a 5:1 molar ratio as a white Synthetic protocols for analogues, NMR spectra, table of
powder. The two compounds were completely separated by HPLC to cytotoxicity, and plausible biosynthetic pathway (PDF)
■
give 4 (261 mg, 0.512 mmol, 73%) as a white powder. 1H NMR (500
MHz, CDCl3) δH 8.89 (2H, brs), 8.25 (3H, d, J = 1.7 Hz), 7.91−7.76
(4H, m), 7.49−7.29 (4H, m), 1.72 (18H, s); 13C NMR (125 MHz, AUTHOR INFORMATION
CDCl3) δC 149.6, 146.4, 136.0, 134.8, 130.6, 128.5, 125.2, 123.9, 123.5, Corresponding Authors
119.5, 118.2, 115.8, 84.5, 28.3; HRESIMS m/z 510.2389 [M + H]+ *E-mail: okadam@mol.f.u-tokyo.ac.jp.
(calcd for C31H32N3O4, 510.2387). *E-mail: abei@mol.f.u-tokyo.ac.jp.
Synthesis of 3,5-Di(indol-3-yl)pyridine (5). To a solution of 4 (171
mg, 0.336 mmol) in CH2Cl2 (1.0 mL) was slowly added TFA (3.0 ORCID
mL) in CH2Cl2 (1.0 mL) at 0 °C, and the mixture was stirred at 0 °C Toshiyuki Wakimoto: 0000-0003-2917-1797
for 1 h. The reaction mixture was quenched and basified with 1 M Ikuro Abe: 0000-0002-3640-888X
aqueous KOH. The mixture was extracted with EtOAc, washed with
saturated aqueous NaCl, dried over Na2SO4, and evaporated to give 5 Present Address
‡
(101 mg, 0.326 mmol, 97%) as a brown powder, which was used T.W.: Faculty of Pharmaceutical Sciences, Hokkaido Uni-
without any further purification. 1H NMR (500 MHz, CDCl3) δH 8.93 versity, Kita 12, Nishi 6, Kita-ku, Sapporo 060−0812, Japan
(1H, s), 8.53 (2H, s), 7.94 (2H, m), 7.50−7.35 (4H, m), 7.30−7.20 Author Contributions
(4H, m); 13C NMR (125 MHz, CDCl3) δC 148.1, 136.8, 134.8, 131.9, †
M.O. and T.S. contributed equally to this work.
130.4, 125.5, 122.9, 122.4, 120.9, 119.4, 111.7; HRESIMS m/z
310.1332 [M + H]+ (calcd for C21H16N3, 310.1339). Notes
The authors declare no competing financial interest.
■
Synthesis of Tricepyridinium Bromide (1b). To a solution of 5
(90.0 mg, 0.291 mmol) in 1,4-dioxane (0.60 mL) was added 3-(2-
bromoethyl)indole (98.0 mg, 0.437 mmol), and the mixture was ACKNOWLEDGMENTS
stirred at 90 °C for 42 h. After the mixture was quenched with H2O, This work was supported in part by a Grant-in-Aid for Scientific
EtOAc was added, and the mixture was extracted with H2O. The
Research from the Ministry of Education, Culture, Sports,
aqueous layer was evaporated to give 1b (97.0 mg, 0.182 mmol, 63%)
as an orange solid. For further analysis, the compound was purified by Science and Technology, Japan (JSPS KAKENHI Grant
HPLC to give analytically pure 1b as a yellow powder. 1H NMR (500 Number JP15H01836, JP16H06443, and JP24688011). Sup-
MHz, CD3OD) δH 8.78 (1H, s), 8.49 (2H, s), 7.70 (2H, s), 7.53 (1H, port was also provided by Takeda Science Foundation,
d, J = 7.6 Hz), 7.47 (2H, d, J = 7.9 Hz), 7.39 (2H, d, J = 7.6 Hz), 7.34 Kobayashi International Scholarship Foundation, and a Grant-
(1H, d, J = 7.9 Hz), 7.22 (2H, dd, J = 7.4, 7.9 Hz), 7.14 (2H, dd, J = in-Aid for the Cooperative Research Project from Institute of
1208 DOI: 10.1021/acs.jnatprod.6b01152
J. Nat. Prod. 2017, 80, 1205−1209
Journal of Natural Products Note
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