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e-ISSN: 2406-9272
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Editor in-Chief : Prof. Dr. Ekowati Chasanah (Biotechnology of Marine and Fisheries, RDCMFPPB, INA)
Editors : 1. Dr. Bagus Sediadi Bandol Utomo (Fisheries Product Development, RDCMFPPB,
INA)
2. Dr. Dewi Seswita Zilda (Biotechology, RDCMFPCB, INA)
3. Dr. Dedi Noviendri (Biotechology, RDCMFPCB, INA)
4. Dr. Hedi Indra Januar (Marine Environmet and Fisheries Food Safety, RDCMFPCB,
INA)
5. Ariyanti Suhita Dewi, Ph.D (Marine Natural Product, RDCMFPCB INA)
6. Prof. Dr. Jose Alberto Ramirez de Leon (Food Processing, Universidad Autonoma de
Tamaulipas, Mexico)
Peer Reviewers : 1. Prof. Dr. Wibowo Mangunwardoyo (Microbial Physiology and Biochemistry,
University of Indonesia, INA)
2. Dr. Ario Damar (Coastal and Marine Bioecology, Bogor Agricultural University, INA)
3. Dr. Agus Trianto (Fisheries and Marine, Diponegoro University, INA)
4. Dr. Dwiyitno (Product Safety, Authenticity and Environmental Studies, RDCMFPCB,
INA)
5. Ir. Dwi Hindarti, MSi (Environmental, Centre for Oceanological Research and
Development, INA)
6. Dr. Kustiariyah Tarman (Bogor Agricultural University, INA)
7. Dr. Nisa Mubarik (Food Safety, Bogor Agricultural University, INA)
8. Nurul Huda, Ph.D (Food Processing, Universiti Sultan Zainal Abidin Kuala
Terengganu,MYS)
9. Dr. Singgih Wibowo (Fisheries Product Development, RDCMFPPB, INA)
10. Yanti, Ph.D (Microbiology, Atma Jaya University, INA)
11. Yogiara, Ph.D (Microbiology, Atma Jaya University, INA)
12. Khomaini Hasan, Ph.D (Biotechnology, Institut Teknologi Bandung, INA)
13. Dr. Muhammad Taher (Natural Product, International Islamic University Malaysia,
MYS)
14. Ir. Yusro Nuri Fawzya, MSi (Biotechnology, RDCMFPCB, INA)
15. Dr. Masteria Yunovilsa Putro (Biochemistry, Indonesian Institute of Sciences, INA)
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Squalen: Buletin Pascapanen dan Bioteknologi Kelautan dan Perikanan (Squalen: Bulletin of Marine and Fisheries
Postharvest and Biotechnology) published periodically three times a year i.e. May, August, and December by
Research and Development Center for Marine and Fisheries Product Competitiveness and Biotechnology
Accredited Number: 21/E/KPT/2018
Third issue of volume 13 Squalen Bulletin of Marine and Fisheries Postharvest and Biotechnol-
ogy has been launched in December 2018. This issue contains 4 original research articles and
1 short communication, i.e. Metabolite profiles and antioxidant activity of Caulerpa racemosa with
different handlings; Identification of Protease-producing bacteria isolated from Banyuwedang, Bali,
and characterization of its protease; Influence of salinity on growth and phycoerythrin production
of Rhodomonas salina; Method comparison of DNA isolation and quantification for fish and seafood
authenticity determination; and Characteristics of solid waste agar industries.
We would like to thank Prof. Dr. Wibowo Mangunwardoyo, Khomaini Hasan, Ph.D, Dr. I.
Mudianta, Dr.Pinus Jumaryatno, Yogiara, Ph.D, Dr. Nisa Mubarik, Dr. Muhamad Nursid, Dr. Eko
Agus Suyono, Dr.Desriani, and Dr. Mala Nurilmala as reviewers for this issue.
Special thanks, also, go to the contributors of the journal for their trust, patience and timely
revisions. We hope that this issue arouses our readers’ interest and may inspire new research
and new findings which will then be published in our future issues of Squalen Bulletin.
Editors
i
ISSN: 2089-5690
e-ISSN: 2406-9272
CONTENT
Page
FOREWORD ........................................................................................................................... i
Metabolite Profiles and Antioxidant Activity of Caulerpa racemosa with Different Handlings
Sihono, Kustiariyah Tarman, Hawis Madduppa, and Hedi Indra Januar ........................................... 93-100
Method Comparison of DNA Isolation and Quantification for Fish and Seafood Authenticity Determination
Dwiyitno, Stefan Hoffman, Koen Parmentier, and Chris Van Keer .................................................. 115-124
iii
AUTHORS GUIDELINES
SQUALEN: BULETIN PASCAPANEN DAN BIOTEKNOLOGI KELAUTAN DAN PERIKANAN
(SQUALEN: BULLETIN OF MARINE AND FISHERIES POSTHARVEST AND BIOTECHNOLOGY)
1. Scope: research paper, short communication and reviews in the field of postharvest, food safety and environment, and bio-
discovery of marine and fisheries.
2. Language: English. It is preferable that manuscripts are professionally edited. The abbreviated name or expression should be
cited in full at first usage, followed by the accepted abbreviation in parentheses. Metric SI units should generally be used.
Chemical formulas and solutions must specify the form used, e.g. anhydrous or hydrated and the concentration must be in
clearly defined units. Common species names should be followed by the Latin binomial (Italic) at the first mention.
3. Manuscript: should be prepared max. 15 pages, double-spaced (except for title, tables, figures, and bibliography which is
prepared in single-spaced) in Microsoft Word on A4 paper, font (Arial 10).
www.bbp4b.litbang.kkp.go.id/squalen-bulletin
SHORT COMMUNICATION
Article history:
Received: 24 September 2018; Revised: 7 November 2018; Accepted: 15 December 2018
Abstract
Agar processed from red seaweed Gracilaria sp. in Indonesia can be found in the form of sheet and powder. The
abundance of cellulose in agar solid waste can be used as an alternative source of carbon for microorganism
growth. The purpose of this study was to determine the component of agar solid waste and to characterize the
cellulose. The agar solid waste (limbah industri agar-agar, LIA) was undergone physical separation process into
agar, fiber cellulose, and celite. The result showed that agar solid waste consisted of 53.53% fiber; 37.33% agar
and 8.60% celite. LIA was characterized for its components including ash, lignin, extractive substances, cellulose,
hemicellulose, and holocellulose using Technical Association of the Pulp and Paper Industry Method (TAPPI). The
TAPPI analysis revealed that solid waste generated from seaweed Gracilaria sp processing had 28.19% cellulose,
38.83% holocellulosa, 10.63% hemicellulose, 8.27% ash, 3.54% insoluble acid ash, 11.23% water, and 1.62%
extractives substances. The lignin content of the solid waste was low (2.08%), therefore it has potential to be utilized
as biomass (bio fertilizer, alternative carbon source). The components in solid waste of agar was determined using
Fourier Transform Infra Red (FTIR). The LIA sample had high content of celite indicated by the absorption peak
which appears at wave length 2343.45 cm-1 for the -Si-H bond and at the wave length 772.99 cm-1 for the bond -Si-
O-. Infra-red spectra showed that celite still exist in solid waste of agar. The study indicated that there was still a
large amount of cellulose in the solid waste of agar.
Keywords: solid waste, cellulose, agar, lignin, celite
*Corresponding author.
E-mail: ifah_munifah@yahoo.com.au
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derived from seaweed has been widely reported, high or low lignin content in the sample. The lignin
among which are Gelidium amansii, Laminaria quantitative method was the Lignin Klason method
japonica, Sargassum fulvellum, Ulva lactuca (Kim et (TAPPI T222 om-02, 2006). This method was carried
al. 2012); Sacharina japonica (Jang, Cho, Jeong, & out on the principle that all carbohydrates in the sample
Kim, 2012; Lee, Li, Lee, Ryu, & Oh, 2013). were hydrolyzed and dissolved in sulfuric acid.
Red seaweed Gracilaria sp. in Indonesia is Unsoluble acid lignin was obtained in solid form. This
processed both traditionally and industrially into agar value, recorded as % lignin, ratio of lignin sample after
sheet and agar powder respectively. This processing hidrolysis to dry weight sample (whole sample).
activities produce 53% solid waste. The abundance
of solid waste generated from the processing of those 2.3 Holocellulosa
products raises the idea for taking advantage of the
cellulose as an alternative renewable material. The The principle of this method was to degrade,
purpose of this study was to determine the component dissolve lignin and obtain a carbohydrate fraction. The
of agar solid waste and also to characterize the total carbohydrate fraction is consisting of white
cellulose component. cellulose and hemicellulose.The extractive free timber
sample equivalent of 2 g dried wood weight was placed
in 250 mL Erlenmeyer, then added 80 mL of distilled
2. Materials and Methods water, 1 g of sodium chloride and 0.5 mL glacial acetic
acid. The mixture was then placed in a water bath at
2.1. Collection of the Samples 70 °C. The water level in the water bath was higher
than the surface of the solution in the Erlenmeyer
The study was conducted at the Research and (modified from Southon & Magana, 2010).
Development Center for Marine and Fisheries Products
Processing and Biotechnology, Jakarta. The sample A total of 1 g sodium chloride and 0.5 mL of acetic
used was solid waste from CV. Agar Sari Jaya, an acid at each 1-hour heating interval and the addition
agar producer in East Java, Malang, using red seaweed was 4 times. Filter the sample using a glass filter
Gracilaria sp. as raw material. The solid waste was then washed with hot water. 25 mL 10% acetic acid
actually a residual solid from the final filtration. Agar was added then washed with hot water until acid free.
The sample was stirred at 103 ± 2 °C until constant
solid waste was treated by eliminating impurities as
weight achieved. The holocellulosa content was
well as ground and sieved using a sieving machine to
calculated as holocellulosa weight to dry wood weight.
obtain 35 mesh size material. Celite was then
separated. 2.4. Cellulose
Size reduction was performed until fine waste
passing through 200 mesh sieve. The remaining agar Cellulose can be separated from holocellulose by
was removed from the solid waste by heating, cooling dissolving hemicellulose (Southon & Magana, 2010).
and drying until obtaining solid waste powder free from A total of 2.5 g of agar solid waste powder was placed
agar. It was assayed triplicates in the form of its in 300 mL Erlenmeyer then added 125 mL of 3.5%
constituent components modified using Technical nitric acid solution and heated in a water bath for 12
Association of the Pulp and Paper Industry Method hours at 80 oC. The sample was filtered and washed
(TAPPI) for moisture content, ash, lignin, extractive with distilled water until colorless and then air dried.
substances, insoluble acid ash, moisture content, The colorless sample was transferred into the
cellulose, hemicellulose, and holocellulose. Erlenmeyer and added a 125 ml mixture of NaOH and
Na2SO3 (20 g: 20 g in 1 L water) and heated for 2
hours at 50 °C. The mixture was filtered and washed
2.2. Lignin
with distilled water until the filtrate was colorless. A
50 mL of 10% sodium chlorite solution was added
Lignin qualitative determination was conducted by
and washed with water until a white precipitate was
discoloration of the reaction between phloroglucinol-
obtained. A 100 mL 10% acetic acid was added and
hydrochloride acid and sample. The phloroglucinol-
washed until acid-free. The sample was then dried in
hydrochloride reagent was prepared by mixing 50 ml
an oven at 103 ± 2 oC until fixed weight achieved. The
of 2% phloroglucinol solution (Benzene 1-3-5-triol) in
cellulose content in the samples was calculated as
ethanol (1 g phloroglucinol in 50 mL of ethanol) with
cellulose (%) to whole sampel dry weight sampel.
25 ml of 35% hydrochloride acid. Mixing with
hydrochloric acid shortly before use, the solution was 2.5. Hemicellulose
stored in a dark bottle with a tight lid. The presence of
lignin in the sample appears as a reddish or pink violet Determination of hemicellulose content was done
color. The intensity of the color associated with the triplicates based on a reduction of the holocellulose
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and cellulose contents (modified from Southon & Generally, the extractive content in non-wood raw
Magana, 2010; Carvalheiro, Duarte, & Gírio, 2008). materials is higher than the wood of broad leaves and
pin wood. Water-soluble extractives include sugar,
2.6. Ash pectin, starch, tannins, gums, dye, and organic salts.
A 2 ± 0.1 g sample was placed at 250 mL Erlenmeyer
The ash determination was performed using TAPPI and added 100 mL hot aquabides water, then placed
T211 om-02 (2002) procedure. Ash shows the content in water bath for 3 hours. The water surface of water
of residual inorganic material after burning of organic bath should exceed the water level in Erlenmeyer.
matter. The main components of wood ash are
The sample was transferred into a dried glass filter
calcium, potassium, and magnesium. Minor
at 105 ± 3 ° C until the weight was constant. The
components are such as manganese, sodium, and
sample was then washed with 200 mL hot water and
phosphor. Determination of ash begins with cleaning
dried at 103 ± 2 ° C until constant weight was obtained
and heating empty ash porcelain crucibles at 525 ±
(TAPPI 204 om-97, 1997). The extractive content in
25 oC for 30 minutes. Then 1 g of sample was weighed
the samples was calculated using the following
in a porcelein crucible, and heated at 100 oC in furnace
formula. Extractives substances (%) = ((A-B)/A) x
then slowly increased the temperature to 525 ± 25 oC
100. This value, recorded as % extractives, can be
until the carbonation occurred without burning. The
used to convert the dry weight sample after extraction
process was completed when the black particles was
(B) reported on a extractives-free basis to an (A) as
disappeared. The crucibles were cooled in the
Dry weight sample (whole sample).
desiccator and then weighed them until constant
weight achieved (TAPPI T211 om-02, 2002).
2.10. Fourier Transform Infra-Red (FTIR)
Analysis
2.7. Insoluble Acid Ash
FTIR analysis was performed using KBr pellet
The ash obtained from the above 2.6 analysis was method. Samples consisting of agar solid waste,
transferred into 250 mL Erlenmeyer and added 25 mL cellulose standard (Sigma) and celite standards were
of 10% HCL solution. The ash was boiled for 5 minutes, 2 mg each crushed in a small mortar with 100 mg of
sieved with a specific filter paper then rinsed with dried KBr crystals. The homogenous mixture was
distilled water several times until pH 7.0 achieved. placed between two key-mounted screws. The two
The filter paper was transferred to porcelein crucible screws were then opened and pressed to produce a
and then inserted it into the furnace at 100 °C and thin disc of 1 cm in diameter by mini hand press tool.
slowly increased to 525 ± 25 °C. Cool and weigh until The KBr thin sample disc was placed in the infrared
constant weight achieved with tolerable different range spectrophotometer cell with a hole leading to the
not more than 0.002 g (TAPPI T211 om-02, 2002).This radiation source (Perkin Elmer). Data were collected
value, recorded as % Insoluble acid ash. It was used over the range of 4000–450 cm-1 with a 4 cm-1 spectral
to convert the weight ash sample after extraction to resolution, and 32 scans were taken per sample
dry weight sample (whole sample). (modified from Liu & Kim, 2017).
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obtain. Therefore, it is widely used as a filter and also Nampoothiri, & Pandey, 2011; Kim et al. 2011, 2012,
for the immobilization of some active compounds 2013; Yanagisawa, Nakamura, Ariga, & Nakasaki,
(Ansari & Husain, 2012). 2011; Ruiz, Jasso, Fernandes, Vicente, & Teixeira,
The solid waste resembled stone and needed to 2013).
reduce the size from 500 m (35 mesh) to 75 m (200 Seaweed consists of various soluble and insoluble
mesh) (Figure 2). This size reduction caused an organic compounds, such as agar, alginate,
increase in the surface area of the substrate. A total carrageenan, glucose, galactose, m annit ol,
of 1.6 kg celite was separated from 20 kg weight of rhamnose, cellulose, and hemicellulose. Most organic
agar solid waste, and the rest was 35 mesh size and inorganic compounds will be washed out during
(500 m) seaweed waste. It was estimated that 8% the phycocolloid extraction process. Residues in the
of solid waste was celite. The size of coarse solid form of agar solid waste containing cellulose,
fiber particle was 35 mesh and then reduced to 200 hemicellulose, and insoluble ash are the main
mesh (75 m). Agar was removed by the addition of components that can be used as feedstock for
water into 200 mesh solid wastes, then boiled and enzyme production (Table 1). Stiger-Pouvreau et al.
cooled. Finally, agar can be separated. (2016) conclude that most seaweed consists of 50-
Kumar, S., Gupta, R., Kumar, G., Sahoo, D., and 60% carbohydrate component.
Kuhad, R.C. (2013) reported that fresh seaweed Solid waste from the processing of Gracilaria
processed into agar produced waste with 62-68% showed high cellulose content. Low lignin content in
holocellulose content. Meanwhile, the waste still the agar solid waste made it possible to be utilized
contains cellulose (Marinho-Soriano, 2001; Marinho- for an alternative renewable material, e.g. as a substrate
Soriano & Bourret, 2005) and the amount is in the production of cellulase. The presence of
approaching 40% (Kumar et al., 2013). The solid waste cellulose in the waste allows it to be used as a source
from agar processing industries in Indonesia (domestic of energy or raw material for the manufacture of high
scale) has been explored to be used as a raw material value products. Cellulose is one of the carbohydrate
for bioethanol (Anggarawati, 2012; Rahmadini, 2012; components found in that solid waste. Cellulose is
Martosuyono, Munifah, & Ningrum, 2016) processed the structural framework of all plants and a major part
by using strong acids, thermal treatment, commercial of plant cell wall which composed of up to 10.000
enzymes, as well as the addition of the Trichoderma units of glucose in the form of hydro glycopiranous
resei, and Saccharomyces cerevisiae (John, Anisha, units with the formula [C6H10O5]n. The cell wall of red
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Table 1. Composition of solid waste agar from CV. Agar Sari Jaya Malang
seaweed consists of cellulose, agar, xylan, and compound provides infrared light at a unique
carrageenan (Wijengsihe & Jeon, 2012). The difference frequency.
in cell wall composition makes seaweed more The agar solid waste, were observed using FTIR,
potential as a source of cellulose than terestrial plants. in order to obtain spectral profiles of cellulose
Another possible application of cellulose is as textile separation from agar industrial waste. The FTIR
fibers that have potential to compete with synthetic analysis is also directed to determine the differences
fibers. For wider applications, cellulose can produce between functional groups contained in the cellulose
several derivative products, including Microcrystalline standard of SIGMA and agar solid waste.
Cellulose, Carboxymethylcellulose, Methylcellulose
and Hydroxypropyl Methylcellulose. These products Infrared spectrum of the agar solid waste sample
are utilized, among others, as an emulsifier, stabilizer, gave the important functional groups appearing at wave
numbers of 3500.05; 2916.24; 2145.54; 1160.49;
thickener, dispersing, and gelling agent.
1424.49; 1374.89; 1053.03; 707.66; and 896.85 cm-1.
Microorganisms, just like other living things are The infrared spectra of standard showed crucial
also require source of energy in the form of carbon, functional groups appearing at wave numbers of
nitrogen, oxygen, iron, and some other minerals. The 3527.96; 2912.80; 2155.91; 1643.35; 1050.00; and
energy source required can come from both nutritional 786.98 cm-1 (Figure 3, Table 2).
sources in the form of synthetic and semi-synthetic
The major peak uptake on the standard celite that
media. On laboratory scale, synthetic and non-
was also found in the agar solid waste spectra was at
synthetic media can be used, but on an large industrial
2342.58 cm-1. The wave numbers appearing in the
scale, the use of synthetic and non-synthetic media
range of 2380-2080 cm-1 indicate the presence of Si
is uneconomical, therefore another alternative source
and H bonds. The other major absorption appearing
of energy being cheap and easy to obtain such as in the range of wave numbers of 1110-830 cm-1 showed
agricultural waste has to be explored (Nair, 2010). the presence of Si and O bonds.
The carbon sources used in culture media such This absorption appeared very strong at the
as carbohydrates, sugars, proteins, and lipids can standard celite at the wave number of 793.68 cm -1
act as energy sources for the growth, carbon skeleton and 772.99 cm-1 for sample solid agar waste as shown
for the synthesis of various biological compounds in Figure 4 and Table 2. The existence of the peak
and metabolism of the microbial cells (Nair, 2010). appearing on the wave number of 3600-3100 cm-1 was
The effect of various natural carbon sources like fruit suspected as the -OH stretching group providing the
juices was investigated as alternative carbon sources hydrogen bonding information, in which the range at
for bacterial cellulose production by Gluconacetobacter this wave number was characteristic of the cellulose
persimmonis GH-2 (Hungund et al., 2013). FTIR spectra (Ciolacu, Ciolacu, & Popa, 2011).
3.2. FT-IR Spectral Collection and Data Analysis With respect to infrared spectrum for standard
cellulose samples, the -OH group was recorded at
FT-IR is an instrument using spectroscopic wave number of 3527.96 cm-1, while the -OH asolid
principles equipped with a Fourier transform for waste of agar-agar group was observed at 3500.05
detection and analysis of spectral profiles. Infrared cm-1. Ciolacu et al. (2011) conclude that the peak
spectroscopy is useful for the identification of a appearing on the wavelength 2900 cm-1 was the C-H
compound because each functional group on the stretching group.
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I. Munifah and H.E. Irianto /Squalen Bull. of Mar. and Fish. Postharvest and Biotech. 13 (3) 2018, 125-132
2343.10
2145.54 a. agar solid waste
3836.08 896.85772.99 619.85
707.66
578.84
2916.24 931.55
3500.05
3527.96
3565.12 1458.11
1424.49
1650.85 471.20
1374.8
Figure 3. Infrared spectrum overlay between spectra a. agar solid waste and b. cellulose standard (Sigma).
Tabel 2. Characteristic infrared bands of standard celite and solid waste of agar spectra
The stretching vibration C-H group emerged on the wave numbers of 1424.49 cm-1 in the solid waste of
wave number of 2916.24 cm-1 for the agar solid waste agar-agar sample (Figure 3 and Figure 4).
standard and 2912.8 cm-1 for the standard cellulose. The peak absorption apearing in the range of 1170-
According to Oh, S.Y., Yoo, I., Shin, Y., and Seo, 1082 cm-1 showed the bonding C-OC stretching in the
G. (2005) peaks that emerger in the range of 4000- 1.4 glucosidic bond (Yang, 2007; Moran, Alvarez,
2995; 2900; 1430; 1375; and 900 cm-1 were a typical Cyras, & Vasquez, 2008; Ciolacu et al., 2011). The
functional group area representing the crystalline or solid waste of agar-agar sample provided peak
amorphous sample. The peak absorption at the wave absorption at wave numbers of 1160.49 cm-1. The
number of 1430 cm-1 indicated the crystallinity of a hydrogen bonds of C-H aromatic pyranose ring
sample. The typical crystallinity uptake emerged at emerged both in the agar solid waste cellulose and
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I. Munifah and H.E. Irianto /Squalen Bull. of Mar. and Fish. Postharvest and Biotech. 13 (3) 2018, 125-132
Figure 4. Infrared spectrum overlay between a. Standard celite; b. agar solid waste 35 mesh; and
c. agar solid waste 200 mesh.
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