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Formal Report
Experiment 1
Fermentation: Kinetics of Yeast Growth
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ABSTRACT
Fermentation is a well-known process and is used for the production of ethanol having
many applications such as fuels, beers, wines, and other alcoholic drinks. Fermentation involves
the growth of a microorganism on an organic substrate. The end products of fermentation include
the microorganisms as well as reduced or oxidized organic compounds. Sugars such as glucose
are a good substrate for microorganisms to grow on because they yield both oxidizable and
reducible intermediates. The type of microorganism and substrate, and environmental factors
such as temperature and pH determines the end products of fermentation.
The purpose of this experiment was to determine and examine the growth parameters and
patterns of fermenting yeast. Furthermore, the data collected in this lab was then used to
determine a ‘scaled-up’ fermenter to be used in large-scale industry. In this experiment
Saccharomyces cerevisiae, commonly known as baker’s yeast, was grown in a bioreactor with
specified conditions for the production of ethanol. The reactor was maintained at a temperature
of 26oC and had an initial glucose and yeast concentration of 40 g/L and 4.0 g/L, respectively.
Samples were taken during the fermentation process and were analyzed for yeast, glucose, and
ethanol concentration. Ethanol and cell yield factors were found to be 0.398 and 0.297,
respectively, and the maximum specific growth rate was 0.165 hr-1.
Using the kinetic information determined by the experiment and given parameters, a
1000L batch reactor was designed. It was determine it would take 31.1 hours for the fermentation
to complete (includes yeast growth lag-time – 2 hours and fermenter preparation – 7 hours). The
final ethanol concentration would be 43.81 g/l, or 43.81 kg of ethanol produced. Assuming 50
weeks of operation, 270 batches could be produced each year, producing a total of 11840 kg of
ethanol annually.
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TABLE OF CONTENTS
Abstract…………………………………………………………………………………..…………
Table of Contents…………………………………………………………………………………...
Nomenclature……………………………………………………………………………………….
Introduction…………………………………………………………………………………………
Literature Review…………………………………………………………………………………...
Apparatus…………………………………………………………………………………………...
Procedures…………………………………………………………………………………………..
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Conclusions…………………………………………………………………………………………
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Recommendations…………………………………………………………………………………..
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References…………………………………………………………………………………………..
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Appendices………………………………………………………………………………………….
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NOMENCLATURE
Molar absorptivity
µ Specific Growth Rate h-
µM Maximum Specific Growth Rate h-
KS Monod or Saturation Constant g/l
l Path Length cm
OD Optical Density
P Product Concentration g/l
S Substrate Concentration g/l
So Initial Substrate Concentration g/l
t Time hr
X Cell Mass Concentration g/l
Xo Initial Cell Mass Concentration g/l
YP Product Yield Factor g/g
YX Cell Yield Factor g/g
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INTRODUCTION
The fermentation experiment was designed to examine the biological process of
Saccharomyces cerevisiae (yeast) growth on glucose and to determine the kinetics of this
products such as carbon dioxide, and alcohol (ethanol in our case). The sugar acts as the organic
substrate for the yeast and allows the microorganisms to grow and yield both oxidizable and
reducible intermediates. The microorganisms in this case being yeast, grows by metabolizing the
sugars. This is commonly done by one of two processes: lactic acid and alcoholic fermentation
processes. When the sugar is consumed and alcohol and carbon dioxide are produced, adenosine
triphosphate (ATP) is also produced. The ATP formed is a vestibule of energy that is used for the
growth and reproduction of the yeast cells. The condition under which this lab was performed
was a nearly anaerobic environment, forcing the cells to consume more sugar and thus increasing
LITERATURE REVIEW
FERMENTATION
alcohol or lactic acid in the absence of oxygen. In the catabolic reaction of fermentation which
produce energy, or ATP, the organic compounds serve as the primary electron donor and the
ultimate electron acceptor. If oxygen is present for this process, it acts as an electron acceptor
and aerobic respiration occurs in the place of fermentation. The primary difference between
fermentation and respiration is: In fermentation, the process occurs in the absence of external
electron acceptors and by contrast, in respiration, molecular oxygen or some other electron
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Fermentation is commonly carried out utilizing glucose as its organic substrate. “A
common biochemical pathway for the fermentation of glucose is glycolysis, also named the
Embden-Meyerhor pathway” (Madigan and Martinko 2006, pg. 118). Several other types of
fermentations are known and the microorganism and substrate used; as well as environmental
factors including temperature and pH determine the products. Main products of fermentation
include ethanol, lactic acid, carbon dioxide, and hydrogen. Production of ethanol the most
prevalent and widespread, utilizing the fermentation process for the production of beers, wines,
YEAST
baker’s yeast. Figure 1 below is a picture of the yeast cells used taken digitally with microscopic
magnification during the lab time. Yeasts are single celled organisms (eukaryotes) and are
considered a main group of the fungi phylogeny. Yeasts are typically 5 – 10 micrometers in
diameter, are spherical, cylindrical or oval and can reproduce asexually or sexually. S.
Cerevisiae is a type of asexual yeast that reproduces from a process called ‘budding’. Budding
occurs when a small bud cell forms on the cell, which gradually enlarges and separates from the
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FIGURE 1: Microscope photograph during experimental run of Saccharomyces cerevisiae
CELL GROWTH
When culturing of microorganisms by inoculating them onto new growth media, they pass
through a number of growth phases, which can be seen below in figure 2 and applies to the
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The growth curve describes the entire life cycle. The lag phase compensates for the period of
time the microbial population needs when inoculated into fresh media to start growing. During
this phase, cells grow slowly and there is little cell mass generated. Once the cells have had time
to adapt and obtain proper nutrients, growth accelerates at a constant maximum where each cell
divides into two cells continuously. This is called the exponential phase and is commonly where
the healthiest cells are found. As the culture of cells continues to grow and multiply, nutrients in
the media become consumed and the cells excrete waste products. Both of these actions result in
growth limitation ceasing exponential growth. This causes the microbial population to reach a
stationary phase. In this phase, there is no net decrease or increase in cell number. Inevitably the
stationary phase is followed by the death phase where the cells begin to die off due to the lack of
food (nutrients) or due to the buildup of their own excretions that produce a toxic environment.
The growth phase can be modeled by a relationship relating yeast growth and cell mass:
(Eqn 1)
The specific growth rate, μ, can be found using the Monod equation as a function of substrate
concentration:
(Eqn 2)
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S = substrate concentration (g/L)
When the saturation constant is very small compared to the value of substrate
concentration (S >> Ks), the saturation constant becomes negligible, and equation 2 above can be
rewritten as; g = M when the cell growth is in the exponential phase. Equation three below is
(Eqn 3)
Equation three is useful in the determination of the maximum specific growth rate. Upon
plotting ln(X/Xo) versus time for the log phase of growth, a straight line is produced, and the
maximum specific growth rate is obtained from the slope of the graph (slope = M).
According to both the lab manual and the ChE 461 text, Bioprocess Engineering, if the
production of product and the decrease of substrate are constant over the batch run, both product
(Eqn 4)
(Eqn 5)
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The absorbance, or optical density, of an object quantifies how much light is absorbed by
it. This information can then be used to find other properties of the object through the Beer-
Lambert law. The Beer-Lambert law relates absorbance, A, of a sample to its concentration, c,
path length, l, and molar absorptivty, (A = lc) Therefore, the concentration of yeast can be
found by measuring the absorbance against known standards or by use of a standard curve.
Absorbance, for the purpose of this experiment, can be found using a spectrophotometer at a
APPARATUS
Throughout the course of the experiment, seven pieces of equipment were used.
The most crucial piece of equipment was, of course, the fermenter. For the purpose of this
experimenter a VIRTIS Omni-Culture Plus bench-top fermenter was employed and was operated
on batch mode. The fermenter can be seen in figure 3 below and consists of a 2500 ml glass jar
with a working volume of 2000 ml in the batch mode. The control box attached to the fermenter
allowed data to be collected regularly for RPM (mechanical agitation speed of the impeller),
temperature and pH. Samples can be withdrawn from the vessel from a sampler atop the glass
water bath.
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Figure 3: VIRTIS Omni-Culture Plus bench-top Fermenter
Analysis of the samples was carried out using a spectrometer, gas chromatograph,
centrifuge, glucose analyzer, and microscope. The spectrophotometer used in the experiment was
a MANDEL UV mini 1240 spectrophotometer. It was used to estimate the cell concentration of
fermenter. The centrifuge used was HETTICH ZENTRIFUGEN Universal 32 R centrifuge. The
centrifuge is capable of separating heavier mass by creating a sediment. This occurs when the
centrifuge spins and applies a force that is perpendicular to the axis of the sample being
centrifuged. After the mixture had been centrifuged, both gas chromatography and glucose
This piece of equipment is fed a gaseous analyte that carried by a mobile phase (also gas) and
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then based on its traveled path, it analyze. In this experiment, the analyte is originally liquid and
The glucose analyzer used was an YSI 2700 SELECT biochemistry Analyzer. Once the
centrifuged sample is placed in the correct sample port, the analyzer draws a sample from a vial
pumps it into the analyzer. Once the analysis was complete, the glucose concentration, in grams
The final piece of equipment used was the LEICA optical microscope that was used along
with a digital camera to capture an image of the yeast cells in the fermentation mixture at 400
times magnification.
EXPERIMENTAL PROCEDURES
The primary portion of this experiment was dedicated to the actual batch fermentation reaction.
When arriving to perform the experiment, the broth media (excluding glucose and yeast) had
already been prepared, heated to 26 C with the water bath, and agitation had been started and set
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The following procedure was carried out starting a 10 am.
i. 60 grams of glucose was weighed out in a weigh boat and added to the fermenter
ii. A 4-5mL sample was taken in order to examine the “pre-inoculation” conditions
by filling a cuvette with the yeast-less broth and zeroing the absorbance.
iii. 12 grams (8g/L) of yeast (Saccharomyces cervisiae) is measured and quickly
added to the fermenter. The time was recorded and the experiment is left for
approximately 2 hours
iv. After 2 hours, another sample (about 4-5 ml) was taken and the optical density
was read immediately. Again, the time was recorded and the experiment was left
density using the spectrometer, and then after being centrifuged, the sample is analyzed
by a factor of 1/50 or 1/100 in a volumetric flask. The diluted mixture was then
absorbance.
vii. The remainder of the sample (3-4 ml) was then poured into a plastic centrifuge
tube and placed in the centrifuge along with a tube of water to balance the
a plastic pipette and put into a glass vial (vial not capped) and placed into the
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turntable of the glucose analyzer for analysis. Once analysis is complete, the
assembly of the gas chromatographer and tested for ethanol. The results are
Through the use of the Monod equation and similar applications, many parameters
associated with yeast fermentation were found and examined. Some of these parameters
included product yield factor, cell yield factor, and growth rates. Furthermore, analyzing the
separate growth phases (the exponential phase in particular) made finding such parameters an
easier goal.
When analyzing the raw and calculated data tabulated in Table 1 in Appendix A, it can be
observed that once the broth was inoculated with yeast, the concentration of yeast cells and
ethanol increase while the concentration of glucose decreased with time. At time zero
(inoculation) the yeast concentration was 6.93 g/l, the ethanol concentration was 0 g/l, and the
glucose concentration was 40 g/l. At the end of the experiment, the yeast concentration was 15.1
g/l, the ethanol concentration was 23.1 g/l, and the glucose concentration was 0.009 g/l. Once the
yeast was introduced into the fermenter, it began to metabolize the sugar, reproduce, and produce
ethanol. Besides just ethanol being produced, carbon dioxide was also produced. This value was
not measured directly but is evident due to the decrease in pH as the experiment was carried out.
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Initially, the pH of the fermentation broth was 7.0, which dropped to 4.3 by the end of the
experiment. This indicates an acidic mixture, caused by the addition carbon dioxide dissolved in
In Figure 4 below, the concentration of yeast was plotted as a function of time. As stated
in the procedure, samples were taken periodically and the optical density was measured. From
the optical density, the yeast concentration was measured throughout the experiment by taking
samples in intervals. The yeast cell concentration could then be determined using correlations
25.00
20.00
Yeast Concentration (g/L)
15.00
10.00
5.00
0.00
0 5 10 15 20 25
Time (hr)
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From this graph, it can be seen that the cell growth doesn’t follow the typical s-curve pattern that
was described in the literature review. Both the lag and exponential phase present on the graph
are exhibited in the shape expected, which is beneficial because most calculations needed for the
purpose of this lab require the data exclusively from the exponential phase. However, the
constant growth that is expected for the portion of this graph. This non-conformity is due to a
drop in the measured optical density. The decrease in cells is unexpected and should not have
occurred. Because the pH and temperature had mostly stabilized at the point of the cell
concentration drop, the cells should have continued their growth phase as expected. If the pH or
temperature had changed, the cell death could have been accounted for because the conditions
The first two hours of the experiment accounts for the lag-phase, and the exponential
phase occurs between 2 and 4 hours. The information collected for the exponential phase can be
used to calculate to determine the maximum specific growth rate, μ M. This was accomplished by
plotting ln(X/Xo) versus time which can be seen in Figure 5 below. Once the data was plotted, it
portrayed a straight line with the slope of the equation equaling μ M, which is 0.165 hr-1. The R2
value of 0.855 shows that the linear fit is not as close as is desired. Again, the data strays from
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1.200
1.180
1.160
y = 0.1645x + 0.4786
2
R = 0.8555
1.140
1.120
Series1
Linear (Series1)
ln(X/Xo)
1.100
1.080
1.060
1.040
1.020
2.00 2.50 3.00 3.50 4.00 4.50 5.00
time (hr)
From the literature review, it was stated that the cell and product yields could be calculated
using equations (4) and (5). These results and calculations are tabulated in Table 2 below. The product
yield factor at the end of the experiment was found to be 0.577 with an average of 0.556 and the cell
yield factor at the end of the experiment was 0.204 (a significant decrease from 0.680 that occurred
after two hours) with an average of 0.472. The theoretical yield of ethanol is 51.1 % by weight (based on
2 moles of ethanol produced for one mole of sugar), whereas the experiment produced a 55.6% yield of
ethanol. Giving a percent difference of 8.8% between the theoretical and experimental values.
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6 2:16 3.93 0.6570 0.670
7 2:26 4.10 0.5772 0.632
8 2:36 4.26 0.5548 0.609
9 3:06 4.76 0.5439 0.231
10 3:36 5.26 0.5587 0.171
11 4:06 5.76 0.5603 0.203
12 9:27 AM 23.12 0.5766 0.204
The value of the saturation constant, KS, is difficult to calculate with the data obtained in
this experiment. In the literature review, it was stated that during the exponential phase, K S<<S,
and therefore was considered negligible. Since we were concerned with calculating the
maximum specific growth rate, the majority of samples were taken during the exponential phase,
and none were taken during the death phase (although this could be argued since my particular
data shows significant cells death where the stationary phase should be occurring). Since K S is
dependent on the substrate concentration, S, samples should have been taken during the death
phase where the substrate concentration was small and did not outweigh the value of KS in order
All of the information obtained from this experiment was used to design of large-scale
fermenter for producing mass quantities of ethanol (calculations can be seen sample calculations
in the section dedicated to fermenter design). In the design of a 1000 L fermenter with 90 g/l
glucose and 1.0 g/l yeast inoculation concentration, it would take 31.1 hours for the fermentation
to complete (includes yeast growth lag-time and fermenter preparation). The final ethanol
operation, 270 batches could be produced each year, producing a total of 11840 kg of ethanol
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Xconversion X (g/L) P (g/L) t (hours) Methanol tcycle (hours) Methanol/t (g/h) Methanol kg
11840.50
0.876 38.22 43.811 22.08 43810.85 31.08 1409.58
CONCLUSIONS
1. The growth curve of Saccharomyces cervisiae, shown in Figure 4, does not successfully
depicts cell growth and its behavior through the various growth phases. Both the lag phase
(observed between 0 and 2 hours) and the exponential phases (observed between 2 and 4
hours) are displayed as expected. However, the stationary phase observed after the 4 th hour
does not demonstrate a balance between the cell growth and cell death. There is instead a
rate, max, of 0.165 hr-1. This was found using the data from the exponential phase with 86%
accuracy
3. The cell yield factor was found to be and 0.204 at the end of the experiment with an
average value of 0.472 over the course of the experiment. This low value for the end of the
experiment again depicts cell death during what should have been the stationary phase.
4. The ethanol or product yield factor was found to be 0.577, with an average value of 0.556.
5. The value of the Monod constant, KS, is difficult to determine in this experiment due to its
relationship with substrate concentration and the assumption that K S is much smaller than
the substrate concentration during the exponential phase when the majority of the data was
recorded.
6. A 1000 L fermenter with an initial glucose concentration of 90 g/l and a yeast inoculation
of 1.0 g/l would take 31.1 hours to ferment, yielding in a final ethanol concentration of
43.81 g/l (43.81 kg of ethanol produced). The amount of ethanol that could be produced
per year is 11840 kg (270 batches per year over 50 weeks of operation).
RECOMMENDATIONS
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1. The overall process could be improved in order to permit less oxygen to enter the system.
2. The yeast used in this lab is also exposed to oxygen which causes the yield to drop. Using
fresh Saccharomyces cervisiae could produce higher ethanol yields, higher cell yields,
the inoculation of the yeast to prevent the growth of unwanted organisms during
fermentation, such as bacteria. This would then reduce lag time and increase ethanol and
cell yields.
4. More frequent sampling throughout the experiment could have resulted in more accurate
results and therefore, better represented graphs. In addition if more sample had been
reliable data. Furthermore, each experimental sample should have been tested more than
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REFERENCES
Madigan and Martinko. 2006. Brock’s Biology of Microorganisms. Upper Saddle River, NJ :
Prentice Hall
Shuler, M.L., & Kargi, F. (2002). Bioprocess Engineering, Basic Concepts. Upper Saddle River,
NJ: Prentice Hall, Inc.
APPENDIX A:
RAW AND CALCULATED DATA
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Table 2: Cell and Ethanol Yield for Fermentation
Sample time ∆t (hour) Yp (g/g) Yx (g/g)
Pre 10:20 0
Pre 12:07 1.78
1 1:36 3.26 0.4952 0.209
2 1:46 3.43 0.5175 0.682
3 1:56 3.59 0.5318 0.635
4 2:06 3.76 0.5414 0.680
5 2:16 3.93 0.6570 0.670
6 2:26 4.10 0.5772 0.632
7 2:36 4.26 0.5548 0.609
8 3:06 4.76 0.5439 0.231
9 3:36 5.26 0.5587 0.171
10 4:06 5.76 0.5603 0.203
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11 9:27 AM 23.12 0.5766 0.204
Yp(avg) Yx(avg)
0.5559 0.472
APPENDIX B:
GRAPHS
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APPENDIX C:
SAMPLE AND DESIGN
CALCULATIONS
SAMPLE CALCULATIONS
Calculation of yeast or cell mass concentration, X, for a 1/50 dilution for sample 2:
X = 41.889*OD -0.1509
Where: OD = 0.177
X = 41.889(0.177) – 0.1509 = 7.30 g/L
X = 77.336*OD + 0.0115
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Where: OD = 0.283
X = 77.336(0.283) + 0.0115 = 21.9
(X X 0 )
YX
(S 0 S )
Where: X = 15.1 g/L
Xo = 4.0 g/L
(X X 0 )
YX = (15.1 g/L - 4.0 g/L)/(40 g/L - 0.009 g/L) = 0.203
(S 0 S )
From Appendix B, Figure B2, the equation of the linear trend line is:
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ln(X/Xo) = 0.1645x + 0.4786
DESIGN CALCULATIONS
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Where: X = 38.22 g/L
tPREPARATION = 7 hours
tLAG-PHASE = 2 Hours
Batches/year = 270
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