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BOOK 1
- Genetics -
- Microbiology -
- Endocrinology -
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BOOK 1
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TABLE OF CONTENTS
Genetics……………………………………………………………………………………………………………………..…… 1
AD disorders……………………………………………………………………………………………………………..… 19
AR disorders……………………………………………………………………………………………………………..… 50
X-linked disorders……………………………………………………………………………………………………..… 90
Mitochondrial disorders………………………………………………………………………………………..……. 104
Monosomies & Trisomies……………………………………………………………………………………………. 109
Imprinting…………………………………………………………………………………………………………………… 123
Hardy-Weinberg…………………………………………………………………………………………………………. 126
Microbiology…………………………………………………………………………………………………………………. 129
Bacteria……………………………………………………………………………………………………………………… 130
Gram-positive bacteria…………………………………………………………………………………………....… 148
Gram-negative bacteria……………………………………………………………………………………………... 171
Mycology…………………………………………………………………………………………………………………... 201
Parasites……………………………………………………………………………………………………………………. 216
Virology…………………………………………………………………………………………………………………….. 235
Endocrinology………………………………………………………………………………………………………………. 275
Pituitary……………………………………………………………………………………………………………………. 277
Thyroid…………………………………………………………………………………………………………………….. 289
Adrenals…………………………………………………………………………………………………………………… 303
Kidneys……...……………………………………………………………………………………………………………. 314
Pancreas………………………………………………………………………………………………………………….. 315
Reproductive…………………………………………………………………………………………………………… 326
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ENDOCRINE
Topics of discussion:
à Introduction
à Pituitary gland
à Thyroid gland
à Adrenal glands
à Kidneys & pancreas
à Endocrine pharmacology
à Reproductive endocrinology
à Female reproductive cancers
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THE PITUITARY
§ Controlled by the hypothalamus
§ Anterior pituitary derived from ______________
growth known as Rathke’s pouch
§ Posterior pituitary derived from ventral
evagination of ectodermal tissue from
______________________
§ Two separate structures, the anterior and
posterior pituitary become tightly bound together Fig 3.01: Anterior and posterior pituitary
(Fig 3.01)
§ Craniopharyngioma is a remnant of Rathke’s pouch
Craniopharyngioma:
§ Calcified cystic tumors most commonly located in the suprasellar
region
§ Histology: Cystic or partially cystic with solid areas
§ Light microscopy: Cysts lined with stratified squamous epithelium,
keratin pearls, cysts filled with yellow fluid rich in cholesterol
§ Seen mainly in childhood between ____-____ years of age
§ Three main components of the craniopharyngioma:
I. Solid portion (comprises the tumor cells)
II. Cystic portion (machinery oil liquid)
III. Calcified portion
§ Symptoms of craniopharyngioma may include any of the following:
ü Headache & visual field deficits
ü Hypopituitarism
ü Hormonal imbalances (growth delay)
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THE THYROID
Anatomy & embryology:
§ Thyroid tissue derived from the __________________
§ Parafollicular C cells of the thyroid derived from neural crest cells
§ Thyroid diverticulum arises from floor of primitive pharynx,
descending into the neck (connection to tongue via thyroglossal duct)
§ Duct normally disappears, however if it persists there may be
formation of a __________________ cyst (neck mass, irregular,
anterior/midline)
§ Ectopic thyroid tissue most likely to be in the _____________
Blood & nerve supply:
§ Highly vascularized structure
§ Supplied by the
_____________________ and
_________________ thyroid arteries (Fig
3.09)
§ Superior thyroid artery is first branch of
the ___________________ carotid artery
and supplies top half of thyroid
§ Anteriorly, right and left branches
anastomose with each other
Fig 3.09: Vascular supply to the thyroid gland
§ Inferior thyroid artery supplies lower half, is
major branch of the ________________________ trunk (from
subclavian artery)
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HIGH-YIELD NUGGET:
§ Thyroid hormones under control of hypothalamic hormones (TRH)
and pituitary hormones (TSH); both begin secreting at approximately
____-____ weeks gestation
Thyroid histology (Fig 3.11):
§ Three main features:
I. Follicles (spherical follicles selectively
absorb iodide (I-))
II. Follicular epithelial cells (single layer
of thyroid epithelium that secretes
T3 & T4); when active become tall
columnar cells
Fig 3.11: Histology of the thyroid gland: 1) Follicles, 2)
III. Parafollicular (clear) cells (secrete Follcular cells, 3) Endothelial cells
calcitonin that counter-regulates Photo courtesy of Uve Gilla
PTH)
Roles of thyroid hormone:
§ Regulation of the basal metabolic rate
§ Affects protein synthesis
§ Regulates bone growth (along with GH)
§ Increases sensitivity to ____________________
§ Generation of heat
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Subacute thyroiditis:
§ Subacute granulomatous thyroiditis
§ Less common cause of hyperthyroidism
§ Affects women more than men
§ Characterized by the following:
ü Neck pain
ü Tender/diffuse goiter
ü Specific course of action (hyperthyroidism à euthyroidism
à hypothyroidism à normal function)
§ Commonly the result of viral infection or post-viral inflammatory
process (URI commonly)
§ Thyroid inflammation damages thyroid follicles, activates proteolysis
of stored thyroglobulin, unregulated release of thyroxine leads to
symptoms of hyperthyroidism
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Hypothyroidism:
§ Thyroid gland cannot produce sufficient thyroid
hormone
§ Classic findings associated with hypothyroidism (Fig
3.15)
ü Fatigue
ü Myalgias
ü Cramping
ü Cold intolerance
ü Weight gain
ü Coarse/brittle nails and hair
Fig 3.15: Common signs & symptoms associated
with hypothyroidism
1°, 2°, & 3° hypothyroidism (Fig 3.16):
§ 1° hypothyroidism: problem originates in the thyroid gland
§ 2° hypothyroidism: problem originates in the pituitary
§ 3° hypothyroidism: problem originates in the hypothalamus
Fig 3.16: Explaining the different
causes of hypothyroidism
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Causes of hypothyroidism:
§ Hashimoto’s thyroiditis
§ Subacute granulomatous thyroiditis
§ Silent lymphocytic thyroiditis
§ Cretinism
§ Euthyroid sick syndrome
Hashimoto’s thyroiditis (autoimmune hypothyroidism):
§ Autoimmune attack against thyroid peroxidase and/or thyroglobulin,
leading to gradual destruction of thyroid follicles
§ Presence of hypothyroid signs/symptoms plus a firm, large, lobulated
thyroid gland (due to lymphocytic infiltration and fibrosis), is telling of
Hashimoto’s thyroiditis
Subacute granulomatous thyroiditis (DeQuervain’s):
§ Sub-acute thyroiditis usually seen during/after viral infection
§ Hyperthyroid initially, followed by hypothyroidism, then resolution
Silent lymphocytic thyroiditis:
§ Occurs post-partum (5-10% of patients)
§ Not associated with neck pain
§ Lymphocytic infiltration without scarring
§ Characterized by hyperthyroidism for few weeks, followed by
hypothyroidism, followed by resolution
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Cretinism:
§ Maternal hypothyroidism leads to congenital hypothyroidism
§ Stunting of baby’s physical and mental development
§ Early diagnosis and ______________ replacement = good prognosis
§ If diagnosis not made early, patient likely to suffer from intellectual
disabilities
Euthyroid sick syndrome:
§ Commonly in hospitalized patients and/or those with recent trauma
§ Patient appears to be hypothyroid, however TSH and thyroid
hormone levels are normal (T3 commonly low)
§ If ____ is low, prognosis is worsened
Hypothyroid management:
§ Problem often chronic requiring life-long treatment
§ Goal is to return patient to euthyroid state
§ Oral synthetic T4 (Levothyroxine)
§ Levothyroxine is deiodinated in peripheral tissue to form T3
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Fig 3.19: Different layers of the adrenal glands and their products
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Cushing’s syndrome:
§ Cushing’s ______________ represents an ectopic
source of cortisol
§ Cushing’s ______________ represents an adrenal
dysfunction
§ Prolonged _________ stimulation causes
hyperplasia of the zona fasciculata à excessive
cortisol production
§ Pituitary adenoma (disease) would lead to increased
ACTH and Cortisol, with decreased CRH (Fig 3.27)
§ Important physical findings of Cushing’s syndrome Fig 3.27: Effects of ACTH-stimulating pituitary
lesion
include:
Ø Buffalo hump
Ø Truncal obesity
Ø Striae
Diagnosing the source of the problem:
§ Diagnosis based on findings of the Dexamethasone suppression test
§ Dexamethasone (exogenous steroid) provides negative feedback to
pituitary (should suppress ACTH secretion); is targeted towards the
hypothalamic-pituitary-adrenal axis (most specific to pituitary)
§ Under normal conditions, administration of Dexamethasone should
suppress ACTH secretion from pituitary (thus lowering cortisol as
well)
§ Overnight low-dose Dexamethasone, under normal circumstances,
should suppress ACTH (if ACTH suppressed, problem likely adrenal)
§ If overnight low-dose Dexamethasone doesn’t suppress ACTH, must
distinguish between disease (pituitary) and ectopic source with higher
dose, as well as the CRH stimulation test
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or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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k
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lic
C
C
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Neuroblastoma:
§ Neuroblastoma begins in nerve cells of the embryo or fetus
§ Seen more often in children < ____ years of age
§ Neuroblasts of the sympathetic nervous system
§ Approximately ____% begin in adrenals, approximately ____% overall
begin in sympathetic nerve ganglia in abdomen
§ Presentation is highly variable (some proceed quickly, some proceed
slowly)
§ Symptoms based on location of presentation (abdominal mass,
constipation, Horner syndrome, back pain, bladder dysfunction)
§ Most likely presentation is abdominal distention and a firm/irregular
mass often crossing the midline
§ Hypertension not a unique characteristic (as opposed to
Pheocromocytoma)
§ Diagnosis of Neuroblastoma based on increased levels of
catecholamine metabolites HVA, VMA and histology, which is
characterized by ___________________ Rosettes (differentiated
tumor cells encircling neuropile)
§ Associated with an overexpression of the _________ oncogene
HIGH-YIELD NUGGET (5 P’s)
Pheocromocytoma:
§ Catecholamine-secreting tumor arising from
____________________ cells of the adrenal medulla
§ Most common adrenal tumor seen in adults
§ Episodic hypertension characteristic (NE, E, DA)
§ Measure urinary & plasma catecholamines & metanephrines
§ Resection is necessary (1st – irreversible a-blockade with
Phenoxybenzamine, 2nd - b-blockade)
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
.c
w
w
tr re tr re
.
.
ac ac
k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
.c
w
w
tr re tr re
.
.
ac ac
k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
.c
w
w
tr re tr re
.
.
ac ac
k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
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C
.c
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.
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§ High levels of free fatty acids (FFA) cause insulin resistance (via
phosphorylation of Serine à interferes with downstream signaling
because serine kinase activated instead of tyrosine kinase)
§ Insulin helps move glucose into all cells, except BRICKLE:
ü B
ü R
ü I
ü C
ü K
ü L
ü E
Mechanism of Insulin secretion (Fig 3.35):
§ Glucose transported into the b-cell by facilitated diffusion through
the _________ glucose transporter
§ As glucose concentration increases, the cell begins to accumulate ATP
§ As ATP levels increase, the ATP:ADP ratio increases; this closes the
ATP-sensitive ______ channel
Fig 3.35: Mechanism of Insulin secretion from beta cells
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
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w
w
tr re tr re
.
.
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k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
.c
w
w
tr re tr re
.
.
ac ac
k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
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om
k
k
lic
lic
C
C
.c
.c
w
w
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.
.
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k e r- s o ft w a k e r- s o ft w a
Diabetic ketoacidosis:
§ Often the result of not complying with one’s medication
§ May be the result of increased insulin requirements (stress, infection)
§ Increased ketone production due to ketogenesis from increased
circulating free fatty acids
§ b-hydroxybutyrate made in greater amounts than acetoacetate
§ DKA is characterized by any of the following:
ü Nausea & vomiting
ü Dehydration
ü Kussmaul breathing
ü Delirium
ü Psychosis
ü Acetone on the breath
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
.c
w
w
tr re tr re
.
.
ac ac
k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
.c
w
w
tr re tr re
.
.
ac ac
k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
.c
w
w
tr re tr re
.
.
ac ac
k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
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w
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.
.
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Glucagon:
§ From the pancreatic a-cells
§ Glucagon stimulated in cases of stress and hypoglycemia
§ Hyperglycemia, Insulin, and Somatostatin will inhibit the release of
glucagon
§ Works through catabolic effects on the body (glycogenolysis, lipolysis,
etc)
§ Glucagonoma may elevate glucagon levels as high as 1000-fold
§ Glucagonoma may be characterized by the following:
ü Weight loss
ü Chronic diarrhea
ü Necrolytic migratory erythema (rash on extremities,
perineum or face)
§ Diagnosis of necrolytic migratory erythema by lesion biopsy, which
demonstrates superficial necrolysis with separation of the outer
epidermal layers with perivascular infiltration with histiocytes and
lymphocytes
§ Diagnosis of glucagonoma based on the following:
Ø Presence of NME
Ø Elevated glucagon levels (500-1000-fold increase)
Somatostatin:
§ Derived from pancreatic d-cells
§ Stimulated by both ____________________ and _________________
§ Works in the vicinity to inhibit insulin and/or glucagon release
§ Somatostatinoma decreases a variety of hormones (Insulin, Glucagon,
CCK, Gastrin, Secretin)
§ Look for glucose intolerance, diabetes, gallstones, or steatorrhea
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
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C
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.
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Pancreatic polypeptide:
§ Secreted by the _________ of the pancreas
§ Stimulated by the presence of proteins, exercise, fasting, acute
hypoglycemia
§ Inhibited by ______________________ and ___________________
§ Role in glycogenolysis and self-regulation of pancreatic secretions
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
om
om
k
k
lic
lic
C
C
.c
.c
w
w
tr re tr re
.
.
ac ac
k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
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om
k
k
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C
C
.c
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REPRODUCTIVE ENDOCRINOLOGY
Leydig cells (Fig 3.39a):
§ Interstitial cells present between the
seminiferous tubules
§ Round, found together in small groups
§ Secrete testosterone from the ____th week
gestation
Sertoli cells (Fig 3.39b):
§ Parts of the seminiferous tubules
§ Play an important role in aiding
spermatogenesis by nourishing developing
Fig 3.39: Leydig cells (a), and Sertoli cells (b)
sperm as it progresses through different
stages
§ Secrete _____ and __________
Spermatogenesis:
§ As spermatogenesis proceeds, the
germ cells migrate towards the lumen
§ Spermatogenesis occurs over
approximately ____ days and is divided
into four phases, which include mitotic
and meiotic phases (Fig 3.40)
Fig 3.40: Steps of spermatogenesis
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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Fig 3.41: Spermatogenesis
§ In first mitosis, spermatogonium from type Aà B
§ Primary spermatocyte undergoes meiosis to secondary spermatocyte
(2n à n)
§ Secondary spermatocyte undergoes secondary meiosis, creating
spermatids
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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k
k
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lic
C
C
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.
.
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PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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om
k
k
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lic
C
C
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w
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tr re tr re
.
.
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PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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k
k
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lic
C
C
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.
.
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PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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k
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C
C
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Follicular phase:
§ Phase characterized by maturation of
ovarian follicles as egg is prepared for
release (Fig 3.46)
§ Main hormone controlling this phase is
___________________
§ FSH secreted by anterior pituitary, rising
and recruiting ovarian follicles at the
graafian follicle stage
§ FSH induces granulosa cell proliferation Fig 3.46: Development of follicle in ovary
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
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k
k
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C
C
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.
.
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PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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C
C
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.
.
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PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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C
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Injection (Depo-Provera):
§ Slow-release Progesterone injection
§ Used more commonly in younger patients who are at greater risk of
non-compliance
Mifepristone:
§ Also known as RU486
§ Is an abortificant that may be used several weeks following unsafe sex
§ Is a progesterone antagonist with strong affinity for progesterone
receptor (5x greater affinity than natural progesterone)
§ Causes necrosis and expulsion of products of conception
Contraindications to OCP usage:
§ Smoker > ____ years of age
§ Pregnancy
§ Liver disease (acute disease)
§ History of estrogen-dependent tumor
§ History of thromboembolic event (stroke)
§ History of hypertriglyceridemia
Menopause:
§ Process whereby the ovary stops producing estrogen
§ May begin anywhere between ____-____ years of age
§ Diagnosis is based on _______ levels; if > ____ is
indicative of menopause
§ Decreased estrogen levels will force the pituitary to
increase its release of FSH (Fig 3.50) Fig 3.50: Decreased estrogen leading
§ Hot flashes characteristic of menopause to increased GnRH and FSH in
menopause
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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Fertility medications:
§ Clomiphene (Clomid): blocks ________________ receptors at the
hypothalamus, thus inducing ovulation by increasing pulsatile
__________
§ Leuprolide: is a __________ analog that stimulates the release of FSH
and LH
§ Pergonal: is a mixture of FSH and LH
§ Multiple gestations may be seen in those using Clomiphene and/or
Pergonal (Clomiphene à 10% rate, Pergonal à 20% rate)
Leuprolide:
§ Synthetic injection, is a GnRH analog
§ Is similar to natural brain-produced hormone
§ Used to treat a variety of problems, including:
ü Anemia due to uterine leiomyoma
ü Prostate cancer (advanced, late stage)
ü Central precocious puberty
ü Endometriosis pain
Dysfunctional uterine bleeding:
§ Characterized by irregular menstrual bleeding whereby other causes
have been ruled out
§ Most common cause of DUB is anovulation
§ Bleeding intervals may vary, with the most common intervals being
the following:
ü < 21 days or > 36 days
ü Lasts > 7 days
ü Blood loss > 80ml
§ The most effective management for DUB is the use of OCP’s
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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C
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Masculinization syndromes:
§ Virilization and hirsutism
§ Hirsutism is most commonly caused by _________ and adrenal
hyperplasia
§ Important hirsutism information:
Ø Excessive body hair (on female)
Ø Acne
Ø Increased testosterone secretion and/or increased
conversion of testosterone à DHT
Ø Spironolactone can slow the effects due to anti-androgenic
properties
Ø Flutamide blocks testosterone receptors
Ø Finasteride (5-a-reductase inhibitor) blocks conversion of
testosterone à DHT
§ Virilization associated with significant rise in testosterone levels,
leading to the development of male characteristics
§ Virilization is characterized by:
Ø Masculinization in a female
Ø Deepening of the voice
Ø Clitoromegaly
Ø Male-pattern baldness
Ø Remodeling of the bony structure
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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Fig 3.51: Normal follicles (left), polycystic ovary (right)
§ PCOS is caused by increased levels of ____, which results in an
increase in production of Androstenedione and Testosterone by the
ovarian theca cells
§ Androstenedione aromatizes to estrone and converts to estradiol in
the ovarian granulosa cells
§ Elevated estrone suppresses FSH, constant LH stimulation results in
anovulation, leading to the formation of multiple cysts
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
ww
ww
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k
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C
C
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.
.
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k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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k
k
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C
C
.c
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.
.
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PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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C
C
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.
.
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PD
or
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!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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C
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.
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PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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k
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C
C
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.
.
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PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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C
C
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.
.
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PD
or
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!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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C
C
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.
.
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PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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k
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C
C
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.
.
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PD
or
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!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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C
C
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.
.
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PD
or
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!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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k
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C
C
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.
.
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k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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k
k
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C
C
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.
.
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k e r- s o ft w a k e r- s o ft w a
PD
or
or
!
!
W
W
O
O
N
N
Y
Y
U
U
B
B
to
to
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.
.
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