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Nomenclature
JOSEPH PAULO L. SILVA
MSMCB - MCB240
LECTURE
Nomenclature
Naming of units characterized and delineated
by classification
Also called the handmaid of taxonomy.
The nomenclature of the different kinds of
living creatures falls into two parts:
https://www.ncbi.nlm.nih.gov/books/NBK8817
Priority of Publication
Principle of priority - the first name
given to a taxon (provided the other
rules are obeyed ) is taken as the
correct name
Valid publication name published in
scientific literatures, together with
sufficient indication of what they refer
to.
Effective publication - name is merely
published in the scientific literature.
Priority of Publication
The earliest names that must be considered are
those published after an official starting date
Linnaeus Species Plantarum of 1753 -
difficulties of knowing to what the early
descriptions refer.
Starting date of 1980 - Code of nomenclature for
bacteria. Approved Lists of Bacterial
Names(Skerman etal., 1980)
Announcement in the official publications is
required to be validly published
International Journal of Systematic Bacteriology (
now the International Journal of Systematic and
Evolutionary Microbiology).
Descriptions
The Code provides guidance on
descriptions, in the form of
recommendations.
Diagnosis - a statement or list of those
features that led the author to conclude
that the proposed taxon is sufficiently
different from other recognized taxa to
justify its revival.
The requirements of a valid publication
Valid publication of names of prokaryotes according to the rules of
nomenclature: past history and current practice (Tindall et.al) 2006
International Journal of Systematic and Evolutionary Microbiology
The protologue - emphasis that an author must make it clear to the
reader the taxonomic rank of the name being proposed, that a
summary of properties of the taxon is listed, so that other workers
can recognize that taxon
Designation of the type a nomenclatural type must be
designated
Nomenclatural types
Actual specimens which serve as
reference specimen for the name.
Type Strains
Types of genera are type species (one
of the included species) and types of
higher names are usually type genera
(one of the included genera).
Name Bearer - the reference point
/type for the name.
Neotype Replaces the lost type
Classification determines nomenclature
Progress in classification must
reflect progress in knowledge
(e.g., no one now wants to classify
all rod-shaped bacteria in Bacillus,
as was popular a century ago).
Changes in name must reflect
progress in classification; some
changes in name are thus
inevitable.
Changes in Name
Conserved Name name retained
by international agreement; the
type maybe changed to a more
suitable one.
New Combination new name
Example
Bacterium carotovorum - Erwinia
carotovora.
Citations
oCitation of a name is to provide a means of
referring to a name, just as a name is a means of
referring to a taxon.
Agrobacterium
tumefaciens (Smith
and Townsend)
Conn
Change of Name
Names should be necessary - there is
only one correct name for a taxon in a
given or implied taxonomy
Names are labels, not descriptions -
scientific names or organisms are today
only labels, to provide a means of
referring to taxa, just like personal
names.
Synonyms and Homonyms
Homonym - a name identical in spelling to another
name but based on a different type.
Tindall B. J Et.al 2006 Valid publication of names of prokaryotes according to the rules of
nomenclature: past history and current practice International Journal of Systematic and
Evolutionary Microbiology.
Thank you for listening.