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College of Medicine
Department of Biochemistry
Sacabin, Ivy
Tinonas, Apple Gay
Ty, Crestherose
Uy, Ann Renette
Valero, Cherry Anne
Yaco, Joyce Ann
Learning Objectives:
Topic Outline
Human Immunodeficiency Virus (HIV) can lead to the disease AIDS (acquired
immunodeficiency syndrome). HIV attacks the bodys immune system, specifically the CD4 cells (T
cells), which help the immune system fight off infections. If left untreated, HIV reduces the number of
CD4 cells (T cells) in the body, making the person more likely to get infections or infection-related
cancers. Over time, HIV can destroy so many of these cells that the body cant fight off infections and
disease. These opportunistic infections or cancers take advantage of a very weak immune system and
signal that the person has AIDS, the last state of HIV infection.
HIV Genome
The HIV RNA genome contains three major genes: gag, pol, and env (Fig. 2).
The gag gene encodes p17 (MA), p24 (CA), and p7 (NC) (core and matrix proteins). The pol
gene encodes reverse transcriptase, protease, integrase, and ribonuclease. Finally, the env gene
encodes gp41 (TM) and gp120 (SU) (transmembrane and surface proteins).
Genes for additional regulatory and accessory proteins of diverse function are located
between the pol and env genes. Listed below are the accessory genes and its functions:
Fig.2 HIV genome
HIV belongs to the primitive Lentivirus (genus of Retroviridae) group consisting of ss RNA,
enveloped icosahedral nucleocapsid, glycoprotein envelope and reverse transcriptase. Retroviruses
store their genetic information in molecules of ribonucleic acid (RNA). However, unlike other RNA
viruses, retroviruses use RNA as a template (master pattern) for forming deoxyribonucleic acid
(DNA), the genetic material that puts viral replication instructions into effect. This process, called
reverse transcription, is the exact opposite of the normal flow of genetic information in living things
in which DNA serves as the template for RNA formation. Lentiviruses has the ability to integrate into
the host chromosome and evade the host immunity causing ability to infect immune cells
(macrophages, and in case of HIV, T cells). HIV glycoprotein molecules are specific for CD4 in the
host cell membrane, attacking CD4+ T-cells.
2. HIV Replication
The first phase of HIV replication, which includes viral entry, reverses transcription and
integration of the virus into the host genome, is accomplished by proteins provided by the virus.
The second phase of replication, which includes the synthesis and processing of viral
genomes, mRNAs, and structural proteins, uses the host cell machinery for transcription and protein
synthesis. The end result of HIV replication in most cell types is cell death (Fig. 3).
1. Attachment to a specific cell surface receptor: Attachment is accomplished via the gp120
fragment of the env gene product on the HIV surface, which preferentially binds to a CD4
receptor molecule therefore; the virus infects helper T cells, Lymphocytes, Monocytes, And
Dendritic Cells, which contain this protein in their cell membranes.
2. Entry of virus into the cell: An additional co-receptor, a Chemokine receptor, is required for
entry of the viral core into the cell. Two Chemokine receptors that are in work by HIV as co-
receptors are CCR5 and CXCR4, which are expressed differentially on different cell types.
Binding to a co-receptor activates the viral gp41 gene product, triggering synthesis between
the viral envelope and the cell membrane (Fig. 4).
3. Reverse transcription of viral RNA: After entering the host cell, the HIV RNA is
transcribed into DNA by reverse transcriptase. An RNA-directed DNA polymerase that enters
host cells as part of the viral nucleocapsid. A host cellular transfer RNA is hydrogen-bonded
to a specific site on each viral RNA molecule for initiation of reverse transcription.
4. Integration of the provirus into host cell DNA: The provirus is Virion Core associated
components and transported to the nucleus with the aid of p17 (MA). In the nucleus, viral
integrase cleaves the chromosomal DNA and covalently inserts the provirus randomly with
respect to the site of integration in the recipient DNA that becomes a stable part of the cell
genome and can never be eliminated. Therefore, HIV has two genomic forms: namely,
single-stranded RNA present in the extracellular virus and pro-viral double-stranded DNA
within the cell.
5. Transcription and translation of integrated viral DNA sequences: The provirus is
transcribed into a full-length mRNA by the cell RNA polymerase II. In all retroviruses, one of
the spliced mRNAs is translated into the envelope proteins. In the complex viruses, such as
HIV and HTLV, additional spliced molecules produce accessory proteins that are important in
regulating transcription and other aspects of replication.
6. Assembly and maturation of infectious progeny: Assembly begins as the genomes and
uncleaved Gag and Gag-Pol polyproteins associate with the TM-modified plasma membrane.
As the virion buds from the surface, viral protease is activated and cleaves the polyproteins
into their component proteins, which then assemble into the mature virion. Cleavage is a
necessary step in the maturation of infectious virus.
The primary cellular receptor for HIV entry is CD4. However, expression of CD4 on a target
cell is necessary but not sufficient for HIV entry and infection. Several chemokine receptors act as co-
factors that allow HIV entry when co-expressed with CD4 on a cell surface, such as CCR5 and
CXCR4 appear to be the two major co-receptors for HIV entry into cells. The first of these to be
identified was CXCR4, or fusin, which is expressed on T cells. Co-expression of CXCR4 and CD4 on
a cell allow T-tropic HIV isolates to fuse with and infect the cell. HIV gp120 interacts with both CD4
and CXCR4 to adhere to the cell and to effect conformational changes in the gp120/gp41 complex
that allow membrane fusion by gp41. CXCR4 is expressed on many T cells, but usually not on
macrophages and does not allow fusion by macrophage-tropic (M-tropic) HIV isolates. CCR5 is
expressed on both Macrophages and T cells and may be infected by the macrophage-trophic HIV
isolate. This is the HIV isolate seen in most cases.
Blood tests are the most common way to diagnose HIV. These tests look for antibodies to the
virus that the body creates in an attempt to fight the virus.
People exposed to the virus should get tested immediately, although it can take the body
anywhere from six weeks to a year to develop antibodies to the virus. Follow-up tests may be needed
depending on the initial time of exposure.
Early testing is crucial. If you test positive for the virus, you and your doctor will discuss and
develop a treatment plan that can help fight HIV and ward off complications. Early testing also can
alert you to avoid high-risk behavior that can spread the virus to others.
WHO has defined five key componentsthe 5 Csthat must be respected and adhered to by all
HTC services. These components are:
Consent
Confidentiality
Counselling
Correct test results
Connection/linkage to prevention, care and treatment.
It should also include sufficient and appropriate information and access to prevention services
for individuals who test HIV negative or HIV positive. HTC services should also include referrals to
medical and psychosocial support services for people diagnosed as HIV positive. Testing for HIV
without informed consent is unethical and violates human rights.
Specific Guidelines
b) Pre- HIV test counseling shall either be conducted in individual or group settings.
Clients shall be strongly encouraged to bring their confidants during the pre- and post-
HIV test counseling.
c) The same counselor is highly recommended to conduct both pre and post-test
counseling and, if needed, follow- up session for a client.
d) Adult clients shall be counseled in a setting that is safe and secure for both councelor
and client.
e) Pre- and post-HIV test counseling of children shall take into consideration the
maturity of the client and when necessary, responsible parents or a legal guardian,
including any registerd social worker, shall be involved.
f) Counselors shall ensure that clients understand the information printed on the consent
form. All necessary and correct information that clients need to make decisions
for themselves shall be provided.
g) Counselors shall strongly encourage follow-up counseling sessions and ensure that
clients utilize referral networks that are in place and functional.
h) All counselors shall have basic knowledge on voluntary blood donation and
incorporate facts on the blood donation and incorporate facts on blood donation when
appropriate.
d) Post-HIV test counseling shall be provided to all clients tested by trained personnel.
e) Counselors providing post test counseling services shall emphasize prevention for
those that tested negative and, medical and psychosocial support to those that tested
positive.
f) The capacities for pre and post HIV test counseling including the capacity to
provide medical and psychosocial support shall be enhanced and the referral
networks between and among these providers shall be functional.
It is the responsibility of the BSF to ensure that donors have been screened properly and
pre-donation counseling has been provided to all potential blood donors in order to prevent
the occurence of reactive and positive samples by eliminating those individual with high risk
behaviors. For confirmed positive blood units, tracing the donor and informing her/him of
the result is not recommended. Providing result to a free HIV test can put the blood supply
at risk as high risk individuals within the window period may avail of this free services.
Information campaign on HIV services available and stigma reduction activities will be
intensified by CHD in areas where positive blood units are identified.
B. Result of Labs
1. If you have infections, get treatment
2. If your CD4 is above 350, come back after 6 months.
3. If your CD4 is below 350, ARV's will be prescribed:
a. You will undergo a 2 week trial period. If there are no adverse effects (side effects),
you will continue with the ARV's. If there are adverse effects, your HIV doctor will
change your ARV's.
b. Prophylaxis is usually given if CD4 is below 200.
C. ARV Treatment
1. If you don't have adverse effects from your ARV's after the trial period, you will be given 1
to 3 month supply of your ARV's.
2. Come back to the treatment hub for your refill of your ARV's a week before you run out
1. Home Tests
The first type of home testing kit involves pricking the finger to collect a blood sample, sending
the sample to a licensed laboratory, and then calling in for results as early as the next business day.
This test is anonymous. If the test is positive, a follow-up test is performed right away, and the
results include the follow-up test. The manufacturer provides confidential counseling and referral to
treatment. The tests conducted on the blood sample collected at home find infection later after
infection than most lab-based tests using blood from a vein, but earlier than tests conducted with oral
fluid.
Another testing procedure involves swabbing the mouth for an oral fluid sample and using a kit
to test it. Results are available in 20 minutes. If tested positive, a follow up test will be needed. The
manufacturer provides confidential counseling and referral to follow-up testing sites. Because the
level of antibody in oral fluid is lower than it is in blood, oral fluid tests find infection later after
exposure than do blood tests. Up to 1 in 12 infected people may test false-negative with this test.
2. ELISA Test
ELISA, which stands for enzyme-linked immunosorbent assay, is used to detect HIV infection.
If an ELISA test is positive, the Western blot test is usually administered to confirm the diagnosis. If
an ELISA test is negative, but you think you may have HIV, you should be tested again in one to
three months.
ELISA is quite sensitive in chronic HIV infection, but because antibodies aren't produced
immediately upon infection, you may test negative during a window of a few weeks to a few months
after being infected. Even though your test result may be negative during this window, you may have
a high level of the virus and be at risk of transmitting infection.
The blood sample will be sent to a laboratory for analysis. For the ELISA test, a lab technician
adds the sample to a petri dish containing HIV antigen. An antigen is any foreign substance, such as
a virus, that causes your immune system to respond. If your blood contains antibodies to HIV, it will
bind with the antigen. The technician will check this by adding an enzyme (a protein that helps speed
up chemical reactions) to the petri dish and watching how your blood and the antigen react. If the
contents of the dish change color, you may have HIV.
3. Western Blot
This is a very sensitive blood test used to confirm a positive ELISA test result. The general
process of a Western blot test is similar to the ELISA. However, the Western blot method is more
complicated. It involves separating the HIV sample into its component proteins using an electrical
current. Then, these proteins are transferred to a special kind of paper (blotting), and reacted with your
blood sample. An enzyme is used to cause color change and detect antibodies.
The Western blot assay is a method in which individual proteins of an HIV-1 lysate are
separated according to size by polyacrylamide gel electrophoresis. The viral proteins are then
transferred onto nitrocellulose paper and reacted with the patient's serum. Any HIV antibody from the
patient's serum is detected by an antihuman immunoglobulin G (IgG) antibody conjugated with an
enzyme that in the presence of substrate will produce a colored band. Positive and negative control
serum specimens are run simultaneously to allow identification of viral proteins (Fig. 6).
HIV, like any other virus, is composed of a number of different proteins. The Western blot
positive control lane contains proteins from a patient sera as well as HIV proteins. HIV positivity can
therefore only be confirmed by the presence of the following types of proteins:
The PCR (polymerase chain reaction) method uses an enzyme to multiply the HIV in the
blood sample. Then a chemical reaction marks the virus. The markers are measured and used to
calculate the amount of virus. This is the most widely used viral load test.
The bDNA (branched DNA) method combines a material that gives off light with the
sample. This material connects with the HIV particles. The amount of light is measured and
converted to a viral count. Bayer produces this test.
The NASBA (nucleic acid sequence based amplification) method amplifies viral proteins
to derive a count
The basic principles of these tests are similar. HIV is detected using DNA sequences that
bind specifically to those in the virus. It is important to note that results may vary between tests.
Viral load results are reported as copies of HIV in one milliliter of blood. The lower the number, the
less virus there is in your blood. Numbers can range from about one million copies to as few as 50
copies. If you have less than 50 copies, your health care provider may tell you that your results are
undetectable. Being undetectable is the best result because it means your virus is under control.
However, undetectable does not mean that you have been cured of HIV; it just means that there is not
enough virus for the test to measure (below 50 copies).
B. Acquired Immunodeficiency Syndrome (AIDS)
1. Definition
Acquired Immunodeficiency syndrome (AIDS) is a term which applies to the most advanced
stages of HIV Infection. It is defined as occurrence of any or more than 20 opportunistic infections or
HIV-related cancer. The CD4 count of an uninfected adult / adolescent who is generally in good
health ranges from 500 cells/mm3 to 1,600 cells/mm3.
Table 4. Categorization of HIV / AIDS is based on the lowest documented CD4 Cell Count
The clinical course of HIV infection is divided into 3 phases: Acute Phase, Chronic Phase, & Crisis
Phase (Fig. 8).
The acute phase represents the initial response of an immunocompetent adult to HIV
infection. Clinically, this phase typically manifests as a self-limited illness that develops in 50% to
70% of affected persons 3 to 6 weeks after infection; it is characterized by nonspecific symptoms
including sore throat, myalgia, fever, rash, and sometimes aseptic meningitis. This phase is also
characterized by high levels of virus production, viremia, and widespread seeding of the peripheral
lymphoid tissues, typically with a modest reduction in CD4 + T cells. Soon, however, a virus-specific
immune response develops, evidenced by seroconversion (usually within 3 to 17 weeks of exposure)
and by the development of virus-specifi CD8 + CTLs. As viremia abates, CD4 + T cells return to
nearly normal numbers. However, the reduction in plasma virus does not signal the end of viral
replication, which continues within CD4 + T cells and macrophages in the tissues (particularly
lymphoid organs).
The middle, chronic phase represents a stage of relative containment of the virus. The
immune system is largely intact at this point, but there is continued HIV replication that may last for
several years. Patients either are asymptomatic or develop persistent lymphadenopathy, and minor
opportunistic infections such as thrush (Candida) or herpes zoster. During this phase, viral replication
in the lymphoid tissues continues unabated; thus, there is no true microbiologic latency in HIV
infection. The extensive viral turnover is associated with continued loss of CD4 + cells, but a large
proportion of the CD4 + cells is replenished and the decline of CD4 + cells in the peripheral blood is
modest. After an extended and variable period, the number of CD4 + cells begins to decline, the
proportion of the surviving CD4 + cells infected with HIV increases, and host defenses begin to
wane. Persistent lymphadenopathy with signifiant constitutional symptoms (fever, rash, fatigue)
reflcts the onset of immune system decompensation, escalation of viral replication, and the onset of
the crisis phase.
Drugs to inhibit infection and replication by the AIDS virus have been an intense focus of
research. More than 200 drugs are in development or clinical trials, and approximately 60 drugs have
been formally approved by the Food and Drug Administration for HIV therapy. There are 4 classes of
anti-retroviral drugs that are classified according to the enzyme they are blocking in order to inhibit
HIV replication/maturation (Fig. 9).
Early Inhibitors
CCR5 Antagonist- Inhibits the binding of glycoprotein (gp120) to CCR5. Blocks HIV
glycoprotein from binding with CCR5 chemokine receptor.
Example: Maraviroc
Fusion Inhibitor- Inhibits the fusion of HIV to host cell. Blocks gp120 receptor in HIV
envelope from fusing with the CD4 in host cell.
Ex. Fuzeon
Integrase Inhibitors
Inhibits the Integrase Enzyme. Attaches to the integrase enzyme preventing the formation of
the provirus and block future virus multiplication in that cell.
Ex. Raltegravir, Elvitegravir, Dolutegravir
From the very first years of the AIDS epidemic, the potential for a vaccine has been regarded
warily, because the virus presents many seeming insurmountable problems.
References:
Brooks, G., Carroll, K., Butel, J., Morse, S., & Mietzner, T. (2010). Jawetz, Melnick, & Adelberg's
Medical Microbiology 25th Ed. San Francisco: McGraw-Hill.
Harvey, R. (2013). Lippincotts Microbiology 3rd Ed. Philadelphia: Lippincott Williams & Wilkins.
Kumar, V., Abbas, A., & Aster, J. (2013). Robbins Basic Pathology 9th Ed. Philadelphia: Elsevier.
Wiley, J., Sherwood, L., & Woolverton, C. (2008). Prescott, Harley, & Klein's Microbiology 7th Ed.
New York: McGraw-Hill.
http://www.who.int/hiv/en/
http://www.hiv.va.gov
http://www.unhcr.org/53a816729.pdf
http://www.cdc.gov/hiv/html/
http://web.stanford.edu/