4/25/2017 LargeDatainMATLAB:ASeismicDataProcessingCaseStudyFileExchangeMATLABCentral

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LargeDatainMATLA:AeimicDataProceingCaetud
version1.0.1.1(4.63MB)by StuartKozola

ThesearethefilesusedinthewebinaronFeb.23,2011.

4.71429
7Ratings
55Downloads
Updated01Sep2016
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Overview Functions Examples

Youcanwatchthearchivedversionofthiswebinarathttp://www.mathworks.com/videos/largedatainmatlabaseismicdataprocessingcasestudy81792.html
(recommended).
Thedemosshowhowtomanageoutofmemorydatausingamemorymappedfileandcustomizingtheobjectforarrayindexing.Thisenablesreuseofthe
memorymappedfileinsidefunctionsorwithparallelcomputingwithoutneedingtorewritecodeorrecreatethememorymappedfileoneachworkermanually.
Thedatafilesarenotinlcludedinthisdownload.ReadtheREADMEfiletolocatethepublicdatasourcesontheinternet.

Thedemoalsoshowshowtospeedupthesolutionofthewaveequation(finitedifferencePDE)usingacustomCUDAkernel.Therelativespeedupobserved
wasaround1.6X.

Thedemosstartwith:
1andintroductiontoseismicanalysis(Kirchhoffmigration,reversetimemigration)

2Largedataextensionofthefunctionalityshownin(1)andparallelcomputingforspeedinguptheprocessingtime

3GPUextensionto(1)showinghowtouseacustomCUDAkerneltosolvethewaveequationcomparedtoaMATLABimplementation(writteninvectorized
form)

CommentandRating(17)
Ratethiumiion 1 2 3 4 5 (Ratingnotrequired)

Commentonthissubmission

AbdHafidz
25Apr2017

adityaaries
28Mar2017

Igotproblemwhilerunningsetup.m

variabledxisundefined.

FuadBahriAulia wherecanifinddat4gpu.mat?
8Feb2017 pleasehelp

PandaBig Igotsomeproblemsandsolveditbymyself.
19Apr2016 qus1:variabledxisundefined
dx=12.5,dxisthereciverintreval

qus2:thevariablewkrsisunused!(Inthesetup.mfile),tocalculatethetravelTimetakesalongtime.Howtoletitrunfast?

BrennaHalverson Hi,doesanyonehavethevideothatislinkedinupabove?Ican'tgetittorunandI'dreallyliketobeabletowatchittolearnmore
10Oct2015 abouthowtointerpretseismicdatausingMATLAB.

chengjoylin
31Aug2015

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AshutoshLondhe Igotproblemwhilerunningsetup.m
30Jul2015
variabledxisundefined.
thereisvariablenamedidx,soiputidxinsteadofdxandrunthesetup.magainbutigotanothererrormsg.
"errorusing*
innermatrixdimensionmustagree
probleminray2d
T=T(iz,iz)*dx"

pleasehelp

DawnLi Imetsameproblemasfollows:
29Jun2015
???Errorusing==>urlwriteat140
ErrordownloadingURL.Yournetworkconnectionmaybedownoryourproxysettingsimproperly
configured.

Errorin==>setupat61
urlwrite(['ftp://seismic.seg.org/pub/datasets/2D/2004_BP_Vel_Benchmark/',f{i}],f{i})

Imodifiedprogramaswhatyouindicatedas:

changetheadressoftheFTPsiteinline61urlwriteto:
'ftp://software.seg.org/pub/datasets/2D/2004_BP_Vel_Benchmark/'

TheprogramacceptedchangesandnewproblemImetis:

Errorusinggunzip>gunzipwrite(line184)
File"shots0001_0200.segy.gz"isnotinGZIPformat.

So,pleasetellmewhichgzipfunctionIshoulduseingunzip(f([5:11,end]))?

Thankyouverymuch.

Rafik Igotaproblemwhitmydata:Couldnotlocatefile:vel_z6.25m_x12.5m_exact.segy
3Mar2015 ErrorinmigrateExample(line13)
V=SegYFileReader('vel_z6.25m_x12.5m_exact.segy',true,false)

Sharad
11Feb2015

BOUSSOUF
10Oct2013

SadeghKarimpouli GreatworkLuis!
6Nov2012 IgotaproblemwhitmydatawhenIused"parfor"inLinux!Igot"Outofmemory"error,evenwitha4GbRAMand6Gbswapmemory!

Jonathan
25May2012
VeryniceofMatlabtoputoutacompletesuiteofprogramsforseismicdataprocessing!!Thanks!

salamay build.munder/gpufailsasdat4gpu.matcantbefound.
4Jul2011
Thecurrentversiondoesnotcontainthisdatfile.

Pleaseupdate.

LuisLopez William,changetheadressoftheFTPsiteinline61urlwriteto:
27May2011 'ftp://software.seg.org/pub/datasets/2D/2004_BP_Vel_Benchmark/'

Thisshouldsolvetheissue.

William setup.mfailswiththefollowingerrors:
16May2011
???Errorusing==>urlwriteat140
ErrordownloadingURL.Yournetworkconnectionmaybedownoryourproxysettingsimproperly
configured.

Errorin==>setupat61
urlwrite(['ftp://seismic.seg.org/pub/datasets/2D/2004_BP_Vel_Benchmark/',f{i}],f{i})

>>

ThisisusingMATLAB7.12.0(R2011a).

ToddSchultz
28Apr2011
Excellentwork!ThisisagreatexampleofsomeoftheoptionsavailabletohandlelargedatasetsinMATLAB.

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4/25/2017 LargeDatainMATLAB:ASeismicDataProcessingCaseStudyFileExchangeMATLABCentral

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Update
1Sep2016 1.0.1.1 Updatedlicense

12Apr2016 1.0.1 updatedwebinarlink

Require
ParallelComputingToolbox

ToruntheGPUcode,youwillneedcompatibleGPU.Seehttp://www.mathworks.com/discovery/matlabgpu.html

MATLAReleae
MATLAB7.11(R2010b)

TagAddTag
gpu largedata parallelcomputing segy seismic

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Downloadapps,toolboxes,andotherFileExchangecontentusingAddOnExplorerinMATLAB.

Watchvideo

fileReader/ functiond=ibm2ieee(ibmf)

%Name:ibm2ieee
ibm2ieee %Abstract:convertamatrixofIBM/36032bitfloats
%toIEEEdoubles.
%
Seg2FileReader %IBMFisthematrixofIBM/36032bitfloatseach
%storedasa32bitunsignedbigendianinteger
SegYFileReader %inaMATLABdouble.
%

SegyMemmap

SeismicFileReader

travelTimeMemmap

gpu/

build.m

fm2d_gpu(v,model,nz,dz,nx,dx,nt,dt)

rtm2d_gpu(v,data,nz,dz,nx,dx,nt,dt)

migrateExample.m

saltModelMigrationRTM.m

setup.m

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migration/

fm2d(v,model,nz,dz,nx,dx,nt,dt)

migrate(travelTime,shot,dt,nz,ix...

plotProgress(X,Y,Z,currentPlot,v...

ray2d(V,Shot,dx)

ricker(f,n,dt,t0,t1)

rtm2d(v,data,nz,dz,nx,dx,nt,dt)

seismic(n)

shot2RecTime(travelTime,ixs,ixr,...

shotRecordLocator(shotNumber,sho...

html/
SeismicMigration
SeismicMigrationExample ExampleFaultModel
Faul...
Contents

LargeDatainMATLAB:A Datasource
CaseStu... Readinvelocitymodeldataandplot
it
Createshotgathers
Generateshotsandsavetofileand
video
Traveltimeby2Draytracing
ProcessShotsKirchhoffMigration
ProcessShotsReverseTime
Migration

Datasource

ThisexampleisderivedfromGerard
Schuster'sMATLABexampleandbook
SeismicInterferometry

addpathfaultModelData
addpathmigration

Readinvelocitymodeldataandplotit

loadvelocityModel
[nz,nx]=size(velocityModel);

dx=10;
dz=10;
x=(1:nx)*dx;
z=(1:nz)*dz;

subplot(2,2,1)
imagesc(x,z,velocityModel)
xlabel('Distance(m)');ylabel('Depth(m)'
title('VelocityModel');
holdon
hshot=plot(x(1),z(1),'w*');
holdoff
colormap(seismic)

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Createshotgathers

Usethevelocitymodeltosimulatea
seismicsurvey.Thewaveequationsis
solvedusingfinitedifferencesforadefined
initialwavefield.

%calculatetimestepdtfromstabilitycrierionforfinitedifference
%solutionofthewaveequation.
dt=0.9*min(min(dz./velocityModel/sqrt(2)));

%determinetimesamplesntfromwavetravelimetodepthandbackto
%surface
vmin=min(velocityModel(:));
nt=round(sqrt((dx*nx)^2+(dz*nx)^2)*2/vmin/dt+1);
t=(0:nt1).*dt;

%addregionaroundmodelforapplyingabsorbingboundaryconditions(20
%nodeswide)
V=[repmat(velocityModel(:,1),1,20)velocityModelrepmat(velocityModel(:,end),1,20)];
V(end+1:end+20,:)=repmat(V(end,:),20,1);

%Definefrequencyparameterforrickerwavelet
f=20;

Generateshotsandsavetofileandvideo

%vidObj=VideoWriter('FaultModelShots.avi');
%open(vidObj);
data=zeros(size(nt,nx));
figure(gcf)
forixs=21:nx+20%shotloop
%initialwavefield
rw=ricker(f,nz+40,dt,dt*ixs,0);
rw=rw(1:nz+20,:);

%plotinitialwavefield
set(hshot,'XData',x(ixs20),'YData',z(1));
subplot(2,2,2)
imagesc(x,z,rw(1:end20,21:end20))
xlabel('Distance(m)');ylabel('Depth(m)'
title(['Shot',num2str(ixs20),'at'
colormap(seismic)

%generateshotrecord
tic
[datasnapshot]=fm2d(V,rw,nz,dz,nx,dx,nt,dt);
toc
%save(['faultModelData\snapshot',num2str(ixs20),'.mat'],'snapshot');
%save(['faultModelData\shotfdm',num2str(ixs20),'.mat'],'data')

data=data(21:end20,:)';

ifismember(ixs20,[1nx/2nx])
start=1;
else
start=nt;
end

fori=start:nt
%plotshotrecordevolution
ds=zeros(nt,nx);
ds(1:i,:)=data(1:i,:);
subplot(2,2,3)
imagesc(x,t,ds)
xlabel('Distance(m)'),ylabel('Time(s)'
title('ShotRecord')
caxis([0.10.1])

%plotwavepropagation
subplot(2,2,4)
imagesc(x,z,snapshot(1:end20,21:end20,i))
xlabel('Distance(m)'),ylabel('Depth(m)'
title(['WavePropagationt=',num2str(t(i),
caxis([0.141])

%writeVideo(vidObj,getframe(gcf));
drawnow;
end%shotloop
end
%close(vidObj);

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Traveltimeby2Draytracing

Generatethetraveltimefieldforallz=0
locations

%vidObj=VideoWriter('FaultModelTravelTime.avi');
%open(vidObj);
travelTime=zeros(nz,nx,nx);
subplot(2,2,2)
forixs=1:nx
travelTime(:,:,ixs)=ray2d(velocityModel,[1ixs],dx);
imagesc(x,z,travelTime(:,:,ixs))
xlabel('Distance(m)'),ylabel('Depth(m)'
title(['Traveltimeforshot',num2str(ixs)])
set(hshot,'XData',x(ixs));
drawnow
%writeVideo(vidObj,getframe(gcf));
end
%close(vidObj)
%saveresultsforlaterreuse
%save('faultModelData\travelTime.mat','travelTime')

ProcessShotsKirchhoffMigration

%vidObj=VideoWriter('FaultModelKirchhoff.avi');
%open(vidObj);
load('travelTime.mat');
Stacked=zeros(nz,nx);
figure(gcf)
colormapseismic%bone
forixs=1:nx
load(['shotfdm',num2str(ixs),'.mat'])
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load(['shotfdm',num2str(ixs),'.mat'])
shot=data(21:end20,:)';
Filexchange M=migrate(travelTime,shot,dt,nz,ixs,nx);
Stacked=Stacked+M;

subplot(2,2,2)
imagesc(x,z,Stacked)
xlabel('Distance(m)');ylabel('Depth(m)'
title('StackedImage');
caxis([135135])

subplot(2,2,3)
imagesc(x,t,shot)
xlabel('Distance(m)');ylabel('Time(s)'
title(['CurrentShot',num2str(ixs)]);
caxis([0.10.1])

subplot(2,2,4)
imagesc(x,t,M)
xlabel('Distance(m)');ylabel('Time(s)'
title(['CurrentMigratedShot',num2str(ixs)]);
caxis([55])

set(hshot,'XData',x(ixs));

drawnow
%writeVideo(vidObj,getframe(gcf));
end
%close(vidObj);

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ProcessShotsReverseTimeMigration

%vidObj=VideoWriter('FaultModelRTM.avi');
%open(vidObj);
Stacked=zeros(nz+20,nx+40);
colormapseismic%bone
forixs=1:nx
load(['shotfdm',num2str(ixs),'.mat'])
shot=data(21:end20,:)';

tic
[~,rtmsnapshot]=rtm2d(V,data,nz,dz,nx,dx,nt,dt);
toc
%save(['faultModelData\rtmsnapshot',num2str(ixs),'.mat'],'rtmsnapshot');

load(['snapshot',num2str(ixs),'.mat'

M=0;
s2=0;
fori=1:nt
M=snapshot(:,:,i).*rtmsnapshot(:,:,nti+1)+M;
s2=snapshot(:,:,i).^2+s2;

ifismember(ixs,[1nx/2nx])
subplot(2,2,3)
imagesc(x,z,snapshot(1:end20,21:end20,i))
xlabel('Distance(m)');ylabel(
title(['ForwardTimeWavePropagationt='
caxis([0.141])

subplot(2,2,4)
imagesc(x,z,rtmsnapshot(1:end20,21:end20,nti+1))
xlabel('Distance(m)');ylabel(
title('ReverseTimeWavePropagation'
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title('ReverseTimeWavePropagation'

Filexchange caxis([0.141])

subplot(2,2,2)
imagesc(x,z,diff(M(1:end20,21:end20)./s2(1:end20,21:end20),2,1))
xlabel('Distance(m)');ylabel(
title(['CurrentMigratedShot'
caxis([.05.05])

drawnow
%writeVideo(vidObj,getframe(gcf));
end
end

Stacked=Stacked+M;
subplot(2,2,2)
imagesc(x,z,diff(Stacked(1:end20,21:end20),2,1))
xlabel('Distance(m)');ylabel('Depth(m)'
title('StackedImage');
caxis([3030])

subplot(2,2,3)
imagesc(x,t,shot)
xlabel('Distance(m)');ylabel('Time(s)'
title(['CurrentShot',num2str(ixs)]);
caxis([0.10.1])

subplot(2,2,4)
imagesc(x,t,diff(M(1:end20,21:end20),2,1))
xlabel('Distance(m)');ylabel('Time(s)'
title(['CurrentMigratedShot',num2str(ixs)]);
caxis([11])

set(hshot,'XData',x(ixs));
drawnow
%writeVideo(vidObj,getframe(gcf));
end
%close(vidObj);

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