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Dr. Roman | June 17, 2015 | PATHOLOGY


SURGICAL PATHOLOGY: An Introduction

Italicized from the lecture of Dr. Roman SURGICAL PATHOLOGY REPORT


th
Blue Text from Surgical Pathology 10 Ed. Should contain all relevant gross and microscopic
features of a case
PATHOLOGY Should be:
ANATOMIC PATHOLOGY Prompt
Autopsy Accurate
Surgical Pathology Brief
Cytology Avoids unnecessary histologic jargon
Forensic Pathology
CLINICAL PATHOLOGY 5 Major Fields:
Hematology 1. History
Clinical Chemistry Clinical data known to the pathologist
Blood Banking Name, age, sex, symptoms, surgical findings,
Immunology/Serology type of surgery
Clinical Microscopy Optional; includes the demographics of the
Microbiology patient
Contains the essential clinical data known to
WHO IS SURGICAL Pathologist? the pathologist at the time he dictates a
Must be a licensed physician. description of the gross specimen(s).
Must undergo training in an accredited hospital Gives the reader of the report, whether a
by the Philippine Society of Pathologist clinician or another pathologist, an immediate
Must pass the Specialty Board Examination given orientation to the nature of the problem that
by the PSP Board of Pathologists. led to that particular operation.
Either a Diplomate or a Fellow 2. Gross
Pathology Residency = 4 years Gross description
Pathologist the one who reads the Precise and thorough, (with picture is better)
biopsies. Fresh or fixed specimen, previously opened
or intact, any landmark (ex. Suture)
Surgical Pathologist Size, color and location of all lesions should
Closely affiliated with all surgical specialties, be recorded.
internal medicine, dermatology, neurology, Use metric system cm used not inches
radiology etc. Exact measurement is better than comparing
He needs to understand the clinicians needs and with objects (e.g. size of an egg which
respond to them accordingly. egg?) give 3D measurements
He needs to tell the clinician, not only whether a It is advisable to give specific dimensions and
tumor is benign or malignant but also descriptions rather than to provide
Extent of the disease comparisons with common objects such as
Grade of malignancy fruits or other vegetables.
Adequacy of surgery Weight is important in many tissues, like
Other pertinent information, e.g. thyroid, prostate normal weight of the
Prognosis prostate = 20g
It is important to be accurate, factual, and
Subspecialties noncommittal in the gross description,
Hematopathology avoiding subjective interpretations as much
Renal Pathology as possible.
Neuropathology Use standard color, like red, brown, amber,
Dermatopathology green rather than blood-stained, pus or milky.
Forensic Pathology using blood-stained, pus or milky somehow

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imparts the diagnosis rather than describe Incomplete communication between clinician and
the specimen pathologist may make diagnosis difficult or
Concluded by stating whether the entire impossible.
specimen was submitted for tissue If diagnosis is not compatible with clinical
processing or sampling was done. diagnosis, send slide to other
3. Microscopic Description pathologists for second opinion
Optional Sampling of tissue need enough samples
Short and straight to the point which vary depending on the pathologist
Histologic samples are kept by the lab Best biopsy is a cleanly excised, uncrushed
Usually not written or described wedge that includes a junction between normal
4. Diagnosis and neoplastic tissue.
Organ, specific site, operation morphologic Adequacy of sample - Adequate volume of tissue
Diagnosis permits a choice of fixatives, histochemical
E.g. Bone, femur, biopsy Osteosarcoma. studies, bioassay or tissue culture.
5. Note or Remarks Fixation of sample fix sample at once
Differential diagnosis, reasons for Upon removal of the breast tissue, it takes 20
interpretation, prognostication and minutes before receptors autolyse secondary
therapeutic consideration to anoxia. If the sample was fixed after > 20
Helps the clinician make his/her diagnosis minutes, the test would yield a false negative
and plan of care result.
One of the most important means of
clinicopathologic correlation BIOPSIES
Incisional Biopsies
REMEMBER! Only a portion of the lesion is sampled.
no technologic advancement can replace the Strictly of diagnostic nature.
time-honored practice of two medical specialist Involves the removal of portion/s of a big
discussing how best to treat a patient. mass
Excisional Biopsies
SLIDE REVIEW Entire lesion is removed usually with a rim of
Slide can be evaluated by several pathologists or normal tissue.
by the same pathologist at a different time. Both diagnostic and therapeutic in some
Slides and paraffin blocks are stored indefinitely. cases.
Usual practice is to review outside slides of Factors to consider:
patient who is referred to his institution prior to Size of the lesion
therapy Depth of lesion
Consultation with other pathologists in unusual, Wide Excision for suspected malignant
difficult and controversial cases is now a popular lesion
practice
Slides sent to different professionals for second Fine Needle Aspiration Biopsy current trend in tissue
opinions. sampling.
- Accurate results of cytology exam
LIMITATIONS OF HISTOLOGIC DIAGNOSIS - Usually done with lung and liver biopsy
Pathologists are physicians and human beings.
They have as great a capacity for error and General Rules for Biopsy Procedure:
susceptibility to subjective distractions as other Larger lesions should be sampled more
practitioners of the art of medicine. variability in pattern may exist and the diagnostic
areas may be present only focally.

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In ulcerated lesion, take from the periphery that Volume of fixative is 10x that of tissue
includes both normal and diseased tissues - (1:10 ratio)
biopsy of the central ulcerated area may show Consider the need for special studies, e.g. touch
only necrosis and inflammation preparations, electron microscopy, cytogenetics,
Biopsy should be deep enough to show molecular pathology, flow cytometry, etc.
relationship between the tumor and stroma -
Epithelia involved by carcinoma have a tendency INTRAOPERATIVE CONSULTATION (FROZEN
to detach from the underlying stroma. This should SECTION)
be avoided whenever possible by careful Required experience, knowledge of clinical
handling of the tissue. medicine and pathology, capacity to make quick
Deep seated lesion can show peripheral tissue decisions under pressure, good judgment and
reaction, e.g. inflammation, fibrosis, calcification attitude that is conservative but no excessively
If the biopsy is too peripheral, this may only so.
reflect peripheral tissue reaction. Similarly, in a Cryostat or Freezing microtome.
mass of lymph nodes, a deep-seated node may A simple question:
show involvement by a malignant tumor, whereas Will the result of the frozen section
a superficial node may show only nonspecific examination influence in any way the
hyperplasia. surgical procedure?
When several fragments of tissues are obtained, If the answer is no, the procedure is not
submit everything - Sometimes the smaller or indicated.
grossly less impressive fragment is the only one E.g. A patient with Hirschsprungs Disease
that contains the diagnostic elements. undergo Frozen Section intraop to determine the
area where there are already ganglion cells
present before performing a pull-through surgery
Three legitimate purpose:
To establish the presence and nature of
a lesion.
To determine adequacy of surgical
margins
To establish whether the tissue obtain
contains diagnosable material or whether
additional sampling is indicated
Diagnosis usually given within 20 minutes
especially with breast specimens
At the time of a frozen section, the diagnosis
given verbally to the surgeon should be
transcribed verbatim in an appropriate form and a
copy of such form incorporated immediately into
the chart.
Get at the junction between normal tissue and the Another copy should remain in the laboratory and
ulcer. Obtaining sample in the middle will only yield be filed with the frozen section slides.
necrotic tissue. Overall accuracy is pretty good:
CAP sponsored review show a
Crushing or squeezing with forceps should be concordance of 98.58%
avoided. increases artifacts making Causes of discrepancies between frozen sections
interpretation difficult and paraffin sections:
Always place adequate amount of fixative Misinterpretation of the original frozen
10% buffered neutral formalin section

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Absence of diagnostic tissue in the FNAB breast, thyroid, salivary glands and lung.
material frozen but present in tissue not It is generally carried out with a fine
sampled. needle (OD 0.60.9 mm), sometimes
Absence of diagnostic tissue in the under image guidance.
material frozen but present in permanent Inexpensive, safe, quick, and when
section performed by experienced workers
A correlation exists between the accuracy of the quite accurate.
procedure and both the tissue type and the It can also induce artifacts of various
nature of the pathologic process. types in the tissues, which the pathologist
The real aim of the frozen section procedure is to should be cognizant of in order to avoid
influence the course of the operation. misinterpretation.
The pathologist should be thoroughly briefed on Many of the special stains that are routinely used
the patient's clinical history: ideally the surgeon for tissue sections can also be very useful for the
and the pathologist should have discussed the evaluation of cytologic material. This includes
case beforehand. The pathologist should be stains for glycogen, melanin, fat, and mucin.
prepared to advise the surgeon as to the best Cytologic material is also well suited for
area to biopsy. examination with immunocytochemical,
Freezing the tissue in isopentane (methylbutane) ultrastructural, flow cytometric, cytogenetic, and
cooled with liquid nitrogen or with an electronic molecular genetic techniques.
device saves valuable time and results in fewer Use 95% alcohol as fixative
artifacts than when the tissue is frozen on the
cryostat stage. DIGITAL PATHOLOGY & TELEPATHOLOGY
Parts: Images can be transmitted electronically to any
Gross examination determine if benign part of the globe.
or malignant from gross features This can be done at various levels, from the e-
Touch imprint touch the slide on the mail attachment of a few static photographs to
surface of the tumor to get samples sophisticated systems that duplicate almost to
Samples are examined perfection the examination of slides under the
cytologically microscope and are, therefore, accurately
Microscopic examination referred to as virtual microscopy.

DIAGNOSTIC CYTOLOGY LEGAL ASPECT OF SURGICAL PATHOLOGY


In the hands of a well-trained, experienced Most common reasons for surgical pathologists
individuals offers an extremely high degree of being brought to trial:
reliability A mistaken diagnosis based on
A positive cytologic diagnosis of malignancy misinterpretation of a slide.
made under these circumstances should be given An important lesion or feature present in the
the same weight as one obtained from a surgical specimen was missed
biopsy. The pathologic diagnosis failed to give the
Terminology used should be the same as those clinician a clear idea about the nature or
used for biopsies e.g. HSIL rather than Moderate extent of the lesion or adequacy of the
Dysplastic cells. sample because of poor wording or
In most organs, the cytology diagnosis should be omissions in the report
followed by conventional biopsy before treatment E.g. Invasion of lymphatics to determine
is carried out e.g. cervical cancer. metastasis was not reported
Pap smear showing severe dysplasia is Two essential components of these claims are:
followed by cervical biopsy to identify
layer involvement

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That the alleged error or omission resulted in Compatible with most stains including
physical, emotional, and/or financial damage histochemical stains
to the patient As long as the tissue is placed in fixative
That such an error or omission was below the shortly (<30 min) after surgical removal,
standards for the practice of pathology in that and overfixation (>2448 hours) is
particular community at that particular time. avoided.
Pure formalin is 40% solution of gas
BASIC ELEMENTS OF MALPRACTICE: formaldehyde
DUTY: recognition of an obligation of a physician Thus a 10% formalin solution represents
to treat the patient. (Physicians responsibility) a 4% solution of the gas, which is 1.3
BREACH: Neglect to treat within the standard of molar.
care. (Responsibility was not done)
PROXIMAL CAUSE: Breach causes injury in a Other Fixatives:
fairly direct manner. (neglect directly affects the ZENKERS
patient) o Expensive and contains Mercuric chloride
DAMAGE: Injury resulted (negative effect) o Often used for biopsies of the kidney, bone
marrow, lymph node and testes.
GROSS TECHNIQUES IN SURGICAL PATHOLOGY o Expensive, requires careful disposal of the
Description of the gross specimen to include: mercury, and necessitates meticulous attention to
Measurement fixation times and washing procedures to remove
Weight the precipitates of mercury.
Color BOUINS
Consistency o Contains picrid acid
Surface texture o Recommended for testicular biopsies
Cut surface texture o Preservation of nucleic acids is very poor.
CARNOYS
Remember! o Mixture of ethanol, chloroform and glacial acetic
Once a lesion is seen intraoperatively, the surgeon must acid
be able to describe the lesion according to its: o Dissolves fats
5 MedTechs Before Christ o For identification of lymph nodes in radical
- Site location (e.g. upper outer quadrant of the resection specimens
breast)
- Size in cm Considerations:
- Shape standard shapes (e.g. oval, irregular) Volume of fixative is at least 10X that of the
- Surface smooth, nodular, granular, borders tissue.
- Symmetry Container should have a wide mouth - tissue can
- Mobility be removed easily after it has been hardened by
- Tenderness the fixation.
- Ballotment how it feels between the thumb and Fixative should surround the specimen on all
the index finger sides.
- Consistency Large specimens that float on a fixative
should be covered by a thick layer of gauze.
FIXATION In cases of large, flat, heavy specimens that
10% buffered formalin rest on the bottom of the containers, the
Relatively inexpensive gauze should be placed between the
Tissue can remain in it for prolonged periods container bottom and the specimen.
without deterioration Fixation is usually carried out room temp.
For large specimen, 4C

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Speed of penetration of formalin is 1 mm/hr. It is advantageous to fix the specimen in
fixation time of several hours is needed for most Carnoy solution, which somewhat clears the
specimens specimen by the action of the chloroform at
o
Fixation can be hastened by heat (60 C) and by the same time that it fixes it.
continuous agitation by heater-motor
Sampling for histologic evaluation
GROSS EXAMINATION Must not be more than 3 mm thick
Specimen photography either color Adipose tissue must be cut even thinner.
transparencies or digital images Not larger than dimensions of tissue cassette
or glass slide
Tissue contamination (floater) some cells Suture material, metal clips, and other foreign
retained at the cutting board from the first bodies should be removed from the tissues
specimen Discrete areas of calcification or ossification
Suspect a floater whenever confronted with should be dissected out, or else the
any of these situations: specimen should be decalcified.
1. A fragment of tissue that looks different Better preparations will be obtained in organs
from all the others by virtue of the covered by folded mucosa (e.g., stomach,
thickness of the section and/or staining bowel) if the sections are taken perpendicular
intensity rather than parallel to the mucosal folds.
2. A fragment of tissue that is on a slightly Adequate sampling with proper labeling (lead
different plane from the others, especially pencil in folder paper material)
if superimposed on them
3. A fragment of tissue showing pathologic Surgical Margins
changes totally different from the others, A positive margin will likely lead to local
and of a type that one would not have recurrence if uncorrected.
expected at all under the clinical Carried out by painting those margins with
circumstances of the case. India ink or a similar pigment before
st
o e.g. malignant cells coming from the 1 sectioning.
specimen transferred to the following The smoother the specimen contours and the
specimen giving it a false positive result harder the consistency, the easier to identify
the true surgical margins.
Specimen radiography for bone lesions,
calcified soft tissue masses, breast biopsies and
excisions (especially if they had been studied by
mammography), cardiac valves, and lymph node
groups in which a lymphangiogram had been
performed.

Lymph node dissection - one of the most


important components in the gross evaluation of
a radical operation for cancer.
Consists of dissecting the node-containing fat
from the organ in the fresh state, using
forceps and sharp scissors.
It is too easy to crush them with the forceps
and scissors, especially if they are dissected
before fixation.

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SPECIAL TECHNIQUES IN SURGICAL PATHOLOGY violetiodine complex (gram positive) and
The gold standard of Surgical Pathology is still with those that are decolorized by alcohol or
the use of the H & E stain on a tissue cut 5 micrometer by acetone treatment and counterstained by
a microtome. either safranin or fuchsin.
Acid Fast - depends on the high lipid content
H & E Technique - hematoxylin staining of nuclei is (mycolic acids and long-chain fatty acids) in
followed by counterstaining of cytoplasms and various the cell walls of mycobacteria, which confer
extracellular materials by eosin. to the cell the ability to complex basic dyes
- In order to function as a nuclear stain, (such as carbolfuchsin) and to retain them
hematoxylin needs to be oxidized (ripened) to following strong decoloration with acid
the purple dye hematein and provided with a net alcohol.
positive charge by combining it (chelating) with a Argentaffin and Argyrophilic stains
metallic salt (mordant) Neuroendocrine cells and their tumors, also
- Eosin is an anionic xanthene dye that combines for reticulin, melanin and calcium
electrostatically with various cytoplasmic Argentaffin reaction depends on the presence
components and with tissue such as collagen or in the tissue of a substance, often of the
muscle, the latter in an amphoteric manner. phenolic group (such as catecholamines or
- It is relatively quick, inexpensive, suitable for indolamines), that reduces silver (and other
most situations, and comparatively easy to metallic) salts
master. In the argyrophilic reaction, an extraneous
- It allows an accurate microscopic diagnosis of the reducing agent such as hydroquinone or
large majority of specimens sent to the formalin is added
laboratory. Amyloid stains
Congo red
Special Techniques for difficult slides Regarded as the most reliable and practical
Special Stains technique to detect amyloid.
Enzyme Histochemistry Reticulin Stains
Tissue Culture Reticular fibers and basement membranes
Quantitative Methods (Histometry) Reticular fibers consist of very thin fibers of
X-Ray Microanalysis mainly type III collagen, which are
Electron Microscopy widespread in connective tissue throughout
Immunohistochemistry the body.
Flow Cytometry Basement membranes are largely composed
Cytogenetics of type IV collagen and laminin.
Molecular Pathology Main applications of silver-based reticulin
stains:
SPECIAL STAINS (1) Epithelial from nonepithelial neoplasms;
PAS (Periodic Acid Schiff) Stain (2) Various mesenchymal neoplasms from
Demonstrate glycogen and neutral each other; and
mucosubstances, outlines basement (3) In situ from invasive carcinoma.
membranes and makes evident most fungi Trichrome Stains
and parasites. Evaluation of the type and amount of
Also useful for the demonstration of the extracellular material
intracytoplasmic crystals in alveolar soft part Determine parasitism
sarcoma. The three tissue structures demonstrated by
Stains for Microorganisms the three component dyes are nuclei,
Gram Stain - allows the separation of cytoplasm, and extracellular collagen
bacteria into those that retain the crystal

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PTAH (Phosphotungstic acid-hematoxylin) stain Myelin stains
To demonstrate intracytoplasmic filaments, Luxol fast blue for the demonstration of
e.g. muscle and glial cells myelin.
Stains for hemosiderin (Perls), melanin (Fontana- Formaldehyde-induced Fluorescence - sensitive
Masson) and calcium (von Kossa) for the demonstration of catecholamines and
Perls - hydrochloric acid splits off the protein indolamines
bound to the iron, allowing the potassium
ferrocyanide to combine specifically with the ENZYME HISTOCHEMISTRY
ferric iron to form ferric ferrocyanide Fell in general disuse because of:
(Prussian blue). Complex technique
Fontana-Masson - ammoniacal silver solution Need for fresh material
is used without a reducing bath. Only Relative non specific
substances capable of reducing directly silver At present time, enzyme histochemical methods
salts (i.e., argentaffin) such as melanin are use are:
demonstrated. Skeletal muscle-related enzymes (for
von Kossa silver is substituted for calcium myopathies)
in calcium salts; this silver salt is then Acetylcholinesterase (for Hirschprungs
reduced to black metallic silver by the use of disease)
light or a photographic developer. Choloroacetate esterase (for myeloid
Stains for neutral lipids leukemia)
Oil red O is the one most commonly
employed. ELECTRON MICROSCOPY
Inconsequential distinction between fibroma Main applications
and thecoma in the ovary, support for the Renal pathology
diagnosis of renal cell carcinoma and Tumor pathology
sebaceous gland tumors of skin, and Limitations
identification of lipid-rich carcinoma in various Sampling - only a small proportion of the
organs. neoplasm can be studied
Mucin stains Paucity of truly specific ultrastructural
Used to classify gastric incomplete features - the number of organelles or other
metaplasia into subtypes (sialomucin- and structures that are exclusive of a cell or tissue
sulfomucin-containing) having supposedly type is very small
different malignant potentials Possible misinterpretation of entrapped non-
Hale colloidal iron stain has become the neoplastic elements as belonging to the
standard for the identification of renal tumor due to the difficulties in evaluating
chromophobe carcinoma spatial relationships in a small tissue sample.
Giemsa stains Diagnostic potential in:
For the demonstration of various Identification of a tumor as neuroendocrine
hematolymphoid elements (including mast through the detection of dense-core granules
cells) and microorganisms. Assessment of the nature of tumor cells with
Elastic fibers granular cytoplasm (oncocyte, granular cells
Weigert-type techniques are reasonably etc)
specific for elastin and are regarded by many ID of epithelial differentiation
as the method of choice for the ID of tumors as melanocytic through
demonstration of these extracellular fibers. detection of melanosomes
The Verhoeffvan Gieson (VVG) stain is ID of Langerhans histiocytosis through the
more popular because it is quick and outlines detection of Birbecks granules
the elastic fibers with a strong black color.

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ID of tumor as composed of steroid- - Also expressed by mesotheliomas, meningiomas,
producing cells from adrenal cortex and a variety of mesenchymal neoplasms, and even
gonads through the detection of abundant some malignant lymphomas.
smooth ER & mitochondria with - Also been found to be a marker of normal and
tubulovesicular cristae neoplastic perineurial cells.
ID of endothelial cells by detection of Weibel- Glial Fibrillary Acidic protein nerve cell
Palade bodies - Present in normal, reactive, and neoplastic
ID of skeletal and smooth muscles by astrocytes; developing, reactive, and neoplastic
detection of cytoplasmic filaments ependymal cells; and developing and neoplastic
ID of Schwann cells by mesoaxons oligodendrocytes
ID of alveolar soft tissue sarcoma by - Also been documented in peripheral nerve
detection of membrane bound crystals sheath tumors and in mixed tumors of salivary
ID of smooth muscles, neural or other types glands and sweat glands.
of differentiation in tumors of GIST family. HCG gestational Trophoblastic Disease
Main situations where EM is used: HER2/neu (ERBB2) determines
Differential diagnosis of carcinoma, behavior/aggressiveness of breast cancer
melanoma and sarcoma. - When overexpressed, it acts as an oncogene.
Differential diagnosis between This overexpression can be seen in breast
adenocarcinoma and mesothelioma carcinoma (22%), lung adenocarcinoma (28%),
Differential diagnosis of anterior mediastinal colorectal carcinoma (17%), lung squamous cell
tumors among thymoma, thymic carcinoid, carcinoma (11%), and gastric adenocarcinoma
malignant lymphoma and seminoma. (11%).
Differential diagnosis of small round cell - Predict response to Herceptin (trastuzumab) in
tumors of infancy. carcinoma of breast and other organs
Differential diagnosis of spindle cell tumors of HMB-45 melanin for melanoma
soft tissues. - Now known to be expressed by other neural
Differential diagnosis between endocrine and crest-derived tumors, angiomyolipomas of the
non-endocrine tumors. kidney and other sites, other components of the
tuberous sclerosis complex (PEComas), and
IMMUNOHISTOCHEMISTRY occasional carcinomas as well as several other
Application of immunologic principles and neoplasms.
techniques to demonstrate molecules in cells and Keratins squamous cells
tissues. - Excellent marker for epithelial differentiation
Remarkable sensitivity and specificity regardless of whether the tumor is of
Applicability to routine processed material endodermal, neuroectodermal, mesenchymal, or
Feasibility of an accurate correlation with the germ cell derivation
traditional morphologic parameters - Particularly common and prominent in synovial
Determine specific or identifying features of the sarcoma, epithelioid sarcoma, and uterine
tumors smooth muscle tumors
Neuron Specific Enolase - found in the majority of
Actin - marker for the identification of smooth muscle cells neuroectodermal and neuroendocrine
and myofibroblasts, and for the evaluation of the neoplasms, including carcinoid tumors and
participation of myoepithelial cells in lesions of malignant melanoma.
breast, salivary glands, and sweat glands. PSA prostate cancer
Epithelial Membrane Antigen (EMA) epithelial cells - Method of choice for the identification of prostatic
- Excellent marker for most normal and neoplastic adenocarcinoma.
epithelia but is not restricted to them S-100 malignant melanoma

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- Evaluation of peripheral nerve sheath and translocations has been particularly
melanocytic tumors. successful in the fields of leukemias and
lymphomas, germ cell tumors, pediatric
FLOW CYTOMETRY tumors, and mesenchymal neoplasms
Measurement of various parameters while a Contributions of CytoGen to Pathology:
suspension of cells flows through a beam of light (1) Defining subsets within putatively
past stationary detectors. histologically homogeneous tumor types
Light scattered at various angles by the cells is (2) Suggesting connections between
registered by detectors and converted to histologically diverse tumors
electronic signals and analyzed by computers (3) Highlighting specific changes in
Cellular features evaluated include cell size, histological subtypes
cytoplasmic granularity, cell viability, cell cycle (4) Suggesting the site of the primary when a
time, DNA content, surface marker phenotype specific cytogenetic change is found in a
and enzyme content. metastasis
Usually used in hematopathology (5) Providing clues to tumor classification,
causation, and presence of cancer-
related genes.
MOLECULAR PATHOLOGY
Based on the application of recombinant DNA
technology.
Can be performed in tissues handled as part
of routine work, including formalin-fixed,
paraffin-embedded material.
Snap frozen material is superior in regard to
the yield and quality of extracted DNA and
particularly RNA
Stained cells enter the flow chamber where they
pass into the center of a stream of sheath fluid in single
file. They are then struck by a focused laser beam and
emit scattered and fluorescent light, which is separated
according to wavelength by appropriate mirrors and
filters. An obscuration bar protects the forward angle light
scatter (FALS) detector from exposure to the direct laser
beam. Only two fluorescence detectors are shown, for
sake of simplicity, but a typical instrument has three or
four such detectors, one of which can be used to
measure laser light scattered perpendicular to the laser
beam by the cells. Signals from the detectors pass to
amplifying processors and then to the integral (on-board)
computer, which digitizes the signals, stores them, and
displays them.

NEWER TRENDS
CYTOGENETICS
Karyotypic analysis of human tumors
Detection of nonrandom or specific
chromosome abnormalities such as
deletions, amplifications, inversions, and

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