Documenti di Didattica
Documenti di Professioni
Documenti di Cultura
Faculty of Science, Charles University in Prague, and b Prague Zoological Garden, Prague, and c Institute of Animal
Physiology and Genetics, The Czech Academy of Sciences, Libchov, Czech Republic
Abstract
The Komodo dragon (Varanus komodoensis) is the largest lizard in the world. Surprisingly, it has not yet been cytogenetically examined. Here, we present the very first description
of its karyotype and sex chromosomes. The karyotype consists of 2n = 40 chromosomes, 16 macrochromosomes and
24 microchromosomes. Although the chromosome number
is constant for all species of monitor lizards (family Varanidae) with the currently reported karyotype, variability in the
morphology of the macrochromosomes has been previously documented within the group. We uncovered highly differentiated ZZ/ZW sex microchromosomes with a heterochromatic W chromosome in the Komodo dragon. Sex chromosomes have so far only been described in a few species of
varanids including V. varius, the sister species to Komodo
dragon, whose W chromosome is notably larger than that of
the Komodo dragon. Accumulations of several microsatellite
sequences in the W chromosome have recently been detected in 3 species of monitor lizards; however, these accumula-
Luk Kratochvl
Faculty of Science
Charles University in Prague
Vinin 7, CZ128 44 Prague 2 (Czech Republic)
E-Mail lukas.kratochvil@natur.cuni.cz
Downloaded by:
Univ. of California San Diego
132.239.1.231 - 7/24/2016 12:19:11 AM
Key Words
CGH Female heterogamety Heterochromatin
Microsatellite accumulation Sex chromosome evolution
Squamate reptile
Downloaded by:
Univ. of California San Diego
132.239.1.231 - 7/24/2016 12:19:11 AM
among lizards was previously attributed to island gigantism; however, recent studies now view this species more
as a relic of the similar-sized monitor lizards that used to
live across Australia and Indonesia [Hocknull et al., 2009].
Currently, there are 3,0005,000 Komodo dragons distributed throughout the islands of Komodo, Gili Motang,
Rinca, Gili Dasami, and Flores. However, a dearth of egglaying females, poaching, human encroachment, and natural disturbances have driven the species to an endangered status, being now listed as vulnerable by the IUCN
Red List [Ciofi, 2002; Ciofi et al., 2002; Sastrawan and
Ciofi, 2002; IUCN 2016].
Monitor lizards (Varanidae) are members of the group
Anguimorpha. The closest related lineages of Anguimorpha are likely snakes and iguanians; however, the relationships between these 3 major lineages differ in phylogenetic reconstructions [Townsend at al., 2004; Vidal and
Hedges, 2005; Wiens et al., 2012]. As far as we know,
karyotypes have been described for 22 species of monitor
lizards [King and King, 1975; King et al., 1982; Olmo and
Signorino, 2016], all of them exhibiting a uniform chromosome number of 2n = 40, and all consisting of 16 macrochromosomes and 24 microchromosomes. Approximately half of the species possess 14 metacentric and 2
acrocentric macrochromosomes, while the other half exhibits variability in the morphology of their macrochromosomes. This variability was an important part of the
study by King and King [1975], where species were organised into several groups based on this characteristic. Srikulnath et al. [2013] investigated rearrangements in 2
species of monitor lizards using comparative gene mapping and came to the same conclusion as King and King
[1975] that the rearrangement of macrochromosomes is
predominantly caused by pericentric inversions and centromere repositioning rather than interchromosomal
changes. They also confirmed that the genome organisation at the chromosomal level of squamate reptiles is rather conserved as previously suggested by Pokorn et al.
[2011a, 2012] or Kasai et al. [2012].
Squamate reptiles possess variability in sex-determining systems; however, this variability is not distributed
equally among lineages [e.g., Pokorn and Kratochvl,
2009]. A sex ratio putatively consistent with temperaturedependent sex determination had been reported in a single species of varanids (V. salvator), but these records appeared dubious under closer examination [Harlow, 2004;
Pokorn and Kratochvl, 2009]. Sex chromosomes have
been detected in only 6 species of monitor lizards (one of
which is V. varius, the sister species to the Komodo dragon) [King and King, 1975; Matsubara et al., 2014], all of
CMA3/DAPI Staining
Chromomycin A3 (CMA3, a DNA dye specific for GC-rich regions) and DAPI (AT-specific) fluorescence staining was performed as described by Sola et al. [1992]. Briefly, the slides were
incubated in McIlvaine buffer containing MgCl2 for 10 min and
stained with 150 l of CMA3 solution in a wet chamber for 15 min.
The slides were then incubated in McIlvaine buffer containing
Methyl Green for 15 min, rinsed in McIlvaine buffer, and finally
stained with DAPI.
Results
Downloaded by:
Univ. of California San Diego
132.239.1.231 - 7/24/2016 12:19:11 AM
Fig. 1. Giemsa-stained karyotype (A, C) and C-banded metaphase (B, D) of a male (A, B) and female (C, D) of
V. komodoensis. The W chromosome is depicted. In the female karyotype it was identified by C-banding of the
metaphase used for karyotyping. Bars = 10 m.
Discussion
The Komodo dragon shares the same basic cytogenetic characteristics with other members of the family Varanidae. It has the diploid chromosome number 2n = 40
and possesses ZZ/ZW sex chromosomes. In fact, the
whole family appears to be very conservative in chromosome number, with also the number of macrochromosomes and microchromosomes being very stable in the
whole group [King and King, 1975; Chaiprasertsri et al.,
2013; Srikulnath et al., 2013; Matsubara et al., 2014].
Based on the modern phylogeny, the monospecific famJohnsonPokorn etal.
Downloaded by:
Univ. of California San Diego
132.239.1.231 - 7/24/2016 12:19:11 AM
Fig. 2. A, B Results of CGH on male (A) and female (B) metaphases of V. komodoensis. The male genome is stained with FITC (green
colour), the female genome with rhodamine (red colour). Regions
common for genomes of both sexes are yellow (combination of
green and red). The W chromosome is indicated in the female
ily Lanthanotidae is likely to be a sister group to Varanidae [Pyron et al., 2013], but as the karyotype has not yet
been determined, we cannot reconstruct how far in the
phylogeny this uniformity extends. The next closest and
cytogenetically studied group is the family Helodermatidae [Pyron et al., 2013], where the karyotype of 1 out of 2
species (Gila monster, Heloderma suspectum) was re-described recently [Johnson Pokorn et al., 2014]. In comparison with the varanids, the karyotype of the Gila monster is composed of 2n = 36, with 14 macrochromosomes
and 22 microchromosomes, similar to that of the other
varanid outgroups (Iguania, snakes) [Singh, 1972; Altmanov et al., 2016; Olmo and Signorino, 2016]. It is
therefore clear that some rearrangements (probably concerning microchromosomes [Srikulnath et al., 2013])
must have happened during the evolutionary pathway
from the last common ancestor of the varanids and the
Gila monster, most likely in the lineage leading to the varanids.
Downloaded by:
Univ. of California San Diego
132.239.1.231 - 7/24/2016 12:19:11 AM
rectly determine the sex of Komodo dragons, which otherwise can be rather difficult. We tested molecular sexing
based on the protocol of Sulandari et al. [2014] on all
available Komodo dragon individuals in Prague Zoo and
found it concordant with our cytogenetic examination of
the species [Rovatsos et al., in press].
The W chromosome of the Komodo dragon is not
identifiable by Giemsa staining since it does not differ
noticeably in morphology from the other similar-sized
microchromosomes. It is, however, highly heterochromatic and thus visible by C-banding. It therefore appears
that whereas the sex chromosomes in Komodo dragons
may not differ extensively in morphology (however, we
stress that we did not unequivocally identify the Z chromosome), they are highly differentiated in sequences, as
also proved by CGH showing that the W chromosome is
enriched with female-specific sequences.
Sex chromosomes have been described in V. varius,
the sister species of the Komodo dragon. King and King
[1975] noticed a difference in the size and morphology
within the largest pair of microchromosomes in the female, while in the male this pair of chromosomes is homomorphic. The W chromosome in V. varius is acrocentric and larger than the metacentric Z and all other microchromosomal pairs, whereas in V. komodoensis the W
chromosome is not larger than several other microchromosomes (fig.1C). It is interesting that the karyotypes of
these 2 species differ notably only in the morphology of
the W chromosomes. The W chromosomes are significantly larger compared to the unidentifiable Z chromosomes (which can be any other microchromosome) in
V. exanthematicus and V. niloticus [King and King 1975]
as well as in V. acanthurus and V. rosenbergi [Matsubara
et al., 2014]. Interestingly, in V. acanthurus the situation
is slightly blurred by the presence of 1 large microchromosome pair carrying a heterochromatic block in the
karyotype of both sexes. In this species, the well-identified W sex chromosome is however clearly larger than the
other microchromosomes. King and King [1975] did not
examine the male karyotype in V. exanthematicus and
V. niloticus. Therefore, although they observed a distinctly heteromorphic pair of microchromosomes in the females, due to the lack of comparison with male karyotypes, we cannot rule out the possibility of it being the
same situation as in V. acanthurus. When Matsubara et
al. [2014] identified the W chromosome in V. gouldii,
they found that it did not differ in size from some of the
other microchromosomes, i.e., a similar case to that of the
Komodo dragon.
JohnsonPokorn etal.
Downloaded by:
Univ. of California San Diego
132.239.1.231 - 7/24/2016 12:19:11 AM
The differences in size and morphology of W chromosomes among monitor lizards can be partially explained
by the differences in the accumulation of microsatellite
repeats. Matsubara et al. [2014] identified an accumulation of AAT microsatellite motifs in the W chromosome
of V. acanthurus and of the CGG motif in the W chromosomes of V. rosenbergi and V. gouldii. However, neither
the probes with these microsatellite motifs, nor the probe
with the GATA microsatellite motif, which was found to
accumulate in sex chromosomes of other reptiles
[OMeally et al., 2010], revealed accumulations in the W
chromosome of V. komodoensis. Also, our CMA3/DAPI
staining shows that there is no GC-rich region present on
the W chromosome of this species (fig.2D, E). The relatively small size of the W in the Komodo dragon in comparison to other microchromosomes cannot be fully explained by the absence of accumulated repetitive motives,
because, in the case of V. gouldii, the W is also the same
size as some of the other microchromosomes and yet contains microsatellite accumulation [Matsubara et al., 2014].
Comparison among varanids further supports the observation that the repetitive content and morphology of unpaired sex chromosomes are evolutionarily highly plastic and dynamic [Matsubara et al., 2006; Pokorn et al.,
Acknowledgements
The authors would like to express their gratitude to Petr Rb
for his ongoing support. We are also grateful to Prague Zoo
namely Zdenk Kymla and Nataa Velensk for their cooperation
on this project. Alexandr Sember kindly provided the telomeric
probe, and Chris Johnson performed the language revision of the
manuscript and provided valuable comments.
Statement of Ethics
The processing of the biological material was carried out under
the supervision and with the approval of the Ethics Committee of
the Faculty of Science, Charles University in Prague, followed by
the Committee for Animal Welfare of the Ministry of Agriculture
of the Czech Republic.
Disclosure Statement
The authors have no conflicts of interest to declare.
References
Hocknull SA, Piper PJ, van den Bergh GD, Morwood MJ, Kurniawan I: Dragons paradise
lost: palaeobiogeography, evolution and extinction of the largest-ever terrestrial lizards
(Varanidae). PLoS One 4:e7241 (2009).
IUCN: World Conservation Monitoring Centre. 1996. Varanus komodoensis. The IUCN
Red List of Threatened Species 1996:
e.T22884A9396736. http://dx.doi.org/10.2305/
IUCN.UK.1996.RLTS.T22884A9396736.en.
Downloaded on 25 January 2016.
Johnson Pokorn M, Rovatsos M, Kratochvl
L: Sex determination and karyotype of the
(nearly) mythical creature, the Gila monster,
Heloderma suspectum (Squamata: Helodermatidae). PLoS One 9:e104716 (2014).
Kasai F, OBrien PCM, Martin S, Ferguson-Smith
MA: Extensive homology of chicken macrochromosomes in the karyotypes of Trachemys
scripta elegans and Crocodylus niloticus revealed by chromosome painting despite long
divergence times. Cytogenet Genome Res
136:303307 (2012).
King M, King D: Chromosomal evolution in the
lizard genus Varanus (Reptilia). Aust J BioI
Sci 28:89108 (1975).
Downloaded by:
Univ. of California San Diego
132.239.1.231 - 7/24/2016 12:19:11 AM
JohnsonPokorn etal.
Downloaded by:
Univ. of California San Diego
132.239.1.231 - 7/24/2016 12:19:11 AM
King M, Mengden GA, King D: A pericentric-inversion polymorphism and a ZZ/ZW sexchromosome system in Varanus acanthurus
Boulenger analysed by G- and C-banding and
Ag staining. Genetica 58:3945 (1982).
Matsubara K, Tarui H, Toriba M, Yamada K,
Nishida-Umehara C, et al: Evidence for different origin of sex chromosomes in snakes,
birds, and mammals and step-wise differentiation of snake sex chromosomes. Proc Natl
Acad Sci USA 103:1819018195 (2006).
Matsubara K, Sarre SD, Georges A, Matsuda Y,
Graves JAM, Ezaz T: Highly differentiated
ZW sex microchromosomes in the Australian
Varanus species evolved through rapid amplification of repetitive sequences. PLoS One
9:e95226 (2014).
Olmo E, Signorino GG: Chromorep: a reptiles
chromosomes database. http://chromorep.
univpm.it/ (2016).
OMeally D, Patel HR, Stiglec R, Sarre SD, Geordes A, et al: Non-homologous sex chromosomes of birds and snakes share repetitive
sequences. Chromosome Res 18: 787800
(2010).
Pianka ER, King D, King RA: Varanoid Lizards of
the World (Indiana University Press, Bloomington 2004).
Pokorn M, Kratochvl L: Phylogeny of sex-determining mechanisms in squamate reptiles: are
sex chromosomes an evolutionary trap? Zool
J Linn Soc 156:168183 (2009).
Pokorn, M, Giovannotti M, Kratochvl L, Kasai
F, Trifonov VA, et al: Strong conservation of
the bird Z chromosome in reptilian genomes
is revealed by comparative painting despite
275 million years divergence. Chromosoma
120:455468 (2011a).
Pokorn M, Kratochvl L, Kejnovsk E: Microsatellite distribution on sex chromosomes at different stages of heteromorphism and heterochromatinization in two lizard species (Squamata: Eublepharidae: Coleonyx elegans and
Lacertidae: Eremias velox). BMC Genetics 12:
91 (2011b).