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Oral microbes are responsible for dental caries and periodontal diseases and have also been
implicated in a range of other diseases beyond the oral cavity. These bacteria live primarily as
complex, polymicrobial biofilms commonly called dental plaque. Cells growing within a biofilm
often exhibit altered phenotypes, such as increased antibiotic resistance. The stable structural
properties and close proximity of the bacterial cells within the biofilm appears to be an excellent
environment for horizontal gene transfer, which can lead to the spread of antibiotic resistance
genes amongst the biofilm inhabitants. This article will present an overview of the different
types and amount of resistance to antibiotics that have been found in the human oral microbiota
and will discuss the oral inhabitants role as a reservoir of antimicrobial resistance genes. In
addition, data on the genetic support for these resistance genes will be detailed and the evidence
for horizontal gene transfer reviewed, demonstrating that the bacteria inhabiting the oral cavity
are a reservoir of transferable antibiotic resistance
Keywords : antibiotic resistance biofilms caries dental plaque horizontal gene transfer mobile genetic
elements oral biofilms periodontitis reservoir of resistance
Antibiotic resistance in pathogenic bacteria currently represents one of the greatest challenges
to modern medicine throughout the world. The
increase in morbidity and mortality due to hospital-acquired superbugs is annually increasing. In a recent EU report on the problem of
antibiotic resistance, it was stated that each year
approximately 25,000 patients die in the EU
from an infection with one of eight different
nosocomial, multidrug-resistant bacteria [101] .
In addition, economic implications for healthcare providers, in terms of increased patient stay
in hospitals, isolation procedures and additional
medical intervention are increasingly impinging on the available budgets. In the EU this has
resulted in extra healthcare costs and productivity losses of at least 1.5 billion each year [101] .
Similar figures are available for the USA [1] .
There are numerous ways that researchers and
clinicians can tackle this problem, including the
much needed discovery or generation of novel
antimicrobials, highlighted by the recent global
10 20 initiative, which aims to produce
ten new antibiotics by 2020 [102] . Another, not
mutually exclusive approach is to try and determine where the resistance comes from. With the
increasing use of antibiotics, it is important to
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10.1586/ERI.10.106
ISSN 1478-7210
1441
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The oral cavity is one of the most bacterially colonized environments in the human body. The microbial diversity present
in the oral cavity is a result of the many different ecological
niches present, ranging from the hard, nonshedding surfaces
of the teeth, both above and below the gingival margin, and
the mucosal surfaces of the various soft tissues, such as the
tongue, cheek and the hard and soft palate. Each of these surfaces presents a different environment to bacteria; therefore,
the microbial populations found at each site are distinct [3] ,
particularly in the elderly [4] . In addition to the varied environment, there is an enormous range of growth substrates that the
resident bacteria encounter during ingestion of foods. It has
been shown that increases in dietary sugar, for example, can
push the population structure of the oral community to one
with predominantly more cariogenic streptococci, which can
subsequently lead to caries [5] . A recent study on the effect of
different drinks has shown that the number of species is significantly lower between coffee and wine drinkers compared with
the control group (water drinkers) [6] .
The numbers of different types of bacteria present in the oral
cavity are only recently beginning to be appreciated. Owing to the
fact that less than half of the species present can currently be cultured in the laboratory the use of next-generation, massively paralleled sequencing technologies are enabling researchers to gain a
more accurate estimate of the true species diversity. A recurring
theme among recent reports is that, whilst there is a core microbiome emerging, for example, streptococci are the predominant
species in a healthy mouth, there are significant interindividual
differences in the microflora detected in each study [79] .
Oral biofilms
The treatment of periodontitis is quite different from the treatment of the majority of other diseases caused by bacterial infections due to the underlying polymicrobial nature of the disease.
There has been a wide variety of different antibiotics used to treat
periodontitis. These have been administered in different doses, in
combinations with other antibiotics and used both alone and in
combination with mechanical plaque removal [18] . Some of the
most common antibiotics that have been shown to result in the
required levels necessary to kill or inhibit bacterial growth in gingival crevicular fluid are amoxicillin and amoxicillin/clavulanic acid,
the tetracyclines, clindamycin and metronidazole. Dentists (in the
UK) prescribe amoxicillin, penicillin and metronidazole most often
with other antibiotics (including cephalosporins, tetracyclines and
macrolides) being prescribed less often [27] ; however, owing to the
polymicrobial nature of oral biofilms there is likely to be certain
species of bacteria present that are resistant to certain antibiotics.
Because of this, the outcome of identical treatment regimes may be
different for different patients and it is for this reason that combination therapies, such as metronidazole and amoxicillin, are now
becoming increasingly important [28,29] and are recommended to
be adjunctive with mechanical debridement [30] .
Intrinsic biofilm resistance to antimicrobials
Bacteria growing within biofilms often exhibit differing phenotypes compared with planktonically grown counterparts. One of
the most clinically important phenotypes is increased resistance
to antimicrobial compounds.
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A study on children who had not received antibiotics in the preceding 3 months demonstrated that 15 out of 18 subjects had tetra
cycline-resistant bacteria in their oral cavity. The children were
highly unlikely to have come into direct contact with tetracycline
as it is not prescribed for children owing to undesirable side effects,
such as the discolouration of the teeth and nails [35] . The most
common gene identified in this cohort was tet(M), which encodes
a ribosomal protection protein, contained on Tn916/Tn1545-like
conjugative transposons in Streptococcus, Granulicatella, Veillonella
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Box2. Mobile genetic elements responsible for the interbacterial transfer of resistance genes.
Plasmids usually exist as independently replicating units; however, on some occasions they will integrate into the bacterial chromosome.
They are grouped into incompatibility (Inc) groups based on their inability to coexist in the same cell. Plasmids from the same Inc group
usually have identical or similar replication/partition systems. Only one plasmid from one Inc group can stably exist in a cell at one time, if
another plasmid enters the cell belonging to the same Inc group, one plasmid will eventually be lost during cell division owing to mutual
interference of the replication process by the other plasmid, leading to an unequal amount of the two plasmids in the dividing cell.
Plasmids are found in both Gram-positive and Gram-negative organisms isolated from the oral cavity.
Conjugative transposons, also known as Integrative Conjugative Elements, are mobile elements that integrate into their hosts genome.
They encode all of the necessary information for intracellular transposition and intercellular conjugation. Some conjugative transposons
have a very broad host range. They are commonly found in Gram-positive and Gram-negative bacteria. The Tn916-like elements are very
common in oral bacteria. Conjugative transposons can carry accessory genes, which often encode antibiotic resistance.
AmpR
ErmR
PenR
TcR
Actinobacillus spp.
Bacillus sp.
Bacteroides sp.
Capnocytophaga spp.
Eubacterium sp.
Fusobacterium spp.
Granulicatella sp.
Haemophilus spp.
37
Leptotrichia sp.
Moraxella sp.
Neisseria spp.
14
14
10
Patsurella sp.
Porphyromonas spp.
Prevotella spp.
Stomatococcus sp.
Streptococcus spp.
41
36
37
38
Veillonella spp.
43
82
For the oral microbiota to act as a reservoir for transferable antibiotic resistance the resistance genes must either be contained on
mobile genetic elements or be capable of being transferred into a
new host by transformation. Whole-genome sequencing and the
analysis of individual genes can determine the likelihood of particular genes being acquired by horizontal transfer as genes that
are more than 95% identical at the nucleotide level in diverse bacteria, for example, tet(M), are highly likely to have been acquired
in this way. There are many complete genome sequences [103,104]
with many more nearing completion which reveal the presence
of antibiotic resistance genes within putative mobile genetic elements (reviewed in [55]). However, functionality of the majority
of putative mobile elements discovered during genome sequencing
projects remains to be experimentally determined.
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Successful transformation of a bacterial cell depends on physicochemical factors of the DNA molecules, such as their size, conformation and concentration of the transforming DNA and other
environmental factors, including UV light, salt, pH, temperature
and the presence of extracellular nucleases. In addition, there are
genetic hurdles to overcome for successful transformation, such
as the presence of restriction systems and the ability of the incoming DNA to either replicate autonomously or integrate into the
recipients genome [56] .
Transformation has no requirement for live donor cells as the
DNA released upon cell death is the principle source of transforming DNA (Figure1) . In addition, some bacteria can actively release
DNA into their environment [57] . Therefore, the rate-limiting steps
for transformation of bacteria growing in an oral biofilm is the longevity of DNA molecules in both the biofilm and the cytoplasm of
the transformed cell. Researchers have investigated the persistence
of Lactococcuslactis chromosomal and plasmid DNA (pVACMC1
and pIL253) in human saliva, and although partially degraded, the
DNA was still visible on an agarose gel after 3.5min incubation.
Furthermore demonstration of the presence of a 520-bp fragment
of the pVACMC1 DNA was demonstrated by PCR after 24h
of incubation in human saliva [58] . pVACMC1 could transform
Streptococcusgordonii DL1 after being incubated in saliva but with
a tenfold decrease in transformation efficiency after being incubated in saliva for 2min compared with untreated DNA [58] . Later
experiments demonstrated the transformation of S.gordonii by
pVACMC1 in the oral cavity of a human volunteer[59] . Another
study using the plasmid pUC18 demonstrated that it could transform E.coli to ampicillin resistance following 24h incubation in
clarified ovine saliva [60] . These studies show that DNA is able
to survive in saliva for a long enough period of time to be able to
transform competent bacteria.
A recent development in the study of biofilm biology is the observation that extracellular DNA is present within many of the biofilm
matrices investigated and is actually required for the formation of
some biofilms [61,62] . A more recent invitro study has demonstrated
that the genomic DNA of a Veillonelladispar strain carrying the conjugative transposon Tn916 was able to transform Streptococcusmitis
to tetracycline resistance within an oral biofilm grown in a fermentor [63] . It has also been demonstrated that some of the bacterial
DNA that can be isolated from human saliva is from bacteria not
normally considered to be members of the oral microflora, such as
Phytoplasmasp. [50] , which is normally associated with plants. This
observation demonstrates the presence of DNA from exogenous
sources in the oral cavity. Virtually any DNA that is found free in the
oral cavity, whether it is derived from oral bacteria or bacteria present on foodstuffs, is able to be a substrate for transformation. The
successful acquisition of resistance genes from the transient microflora may be a mechanism that enables the normal flora to build
up its reservoir. In addition, this reservoir of genes will be available
in the form of free DNA from dead biofilm residents to transient,
competent bacteria passing through the oral cavity. Therefore, it is
possible that broad host range gene transfer within, out of and into
oral biofilm inhabitants can occur by transformation.
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Figure1. Transfer of DNA between bacterial cells. The bacterial cells are
represented by the green and purple ovals. The DNA is represented by the helix.
Transposons and plasmids are either blue bars or circles. The arrows show the
direction of transfer of the DNA. (A) Transformation: the donor cell (top left) has
lysed and the DNA released into the environment. This can be taken up by
competent bacteria and incorporated into the recipient genome. (B) Conjugation
of plasmids through a pilus. (C) Conjugation of conjugative transposons
via a mating pore. (D)Transduction mediated by the injection of DNA by
abacteriophage.
Review
Acquired antibiotic resistance can persist in the environment even in the absence of selective pressure (antibiotics)[79] .
Presumably this is due to low fitness costs associated with acquisition of mobile elements carrying resistance genes. This has
been demonstrated for both plasmids and transposons. A more
thorough understanding of these metabolic burdens and the
way host cells evolve to cope with the acquisition of foreign
DNA is likely to be facilitated with the improved and increasingly cheap molecular techniques currently on, or coming to,
the market.
Recently various transcriptional and translational regulatory
systems have been described for a variety of different mobile
genetic elements that contain antibiotic resistance genes and a
common theme emerging from the studies is that these elements
are able to control their transcription and only express genes when
they sense certain, as yet ill-defined, environmental cues that can
promote their transfer. The continued research in this area will
allow an understanding of what triggers their transfer and give
insights into how to control, or stop it occurring.
Financial & competing interests disclosure
The authors have received financial support from the Commission of the
European Communities, specifically the Infectious Diseases research domain
of the Health theme of the 7th Framework Programme, contract 241446,
The effects of antibiotic administration on the emergence and persistence
of antibiotic-resistant bacteria in humans and on the composition of the
indigenous microbiotas at various body sites. The authors have no other
relevant affiliations or financial involvement with any organization or
entity with a financial interest in or financial conflict with the subject matter or materials discussed in the manuscript. This includes employment,
consultancies, honoraria, stock ownership or options, expert testimony,
grants or patents received or pending, or royalties.
No writing assistance was utilized in the production of this
manuscript.
Key issues
The oral microflora is extremely diverse and many inhabitants live within oral biofilms.
The normal oral flora contains many different antibiotic resistance genes.
Many of these antibiotic resistance genes are located on mobile genetic elements.
The biofilm environment is ideal for horizontal gene transfer.
Treatment with antibiotics selects for resistant strains and can also promote the mobility of mobile elements conferring this resistance.
Gene transfer in many different biofilm environments and of many different mobile genetic elements has been demonstrated.
The normal commensal oral flora acts as a reservoir of transferable antibiotic resistance genes, which are available to transientinhabitants.
Moreover, it is possible that these transient inhabitants act as donors of resistance genes to the normal oral flora.
HandelsmanJ. Call of the wild: antibiotic
resistance genes in natural environments.
Nat. Rev. Microbiol. 8, 251259 (2010).
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