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Bioinformatics Institute
BII
Bioinformatics
2010
(A member of A*STAR’s Biomedical Sciences Institutes)
30 Biopolis Street #07-01 Matrix
Singapore 138671
Tel: +65 6478 8298
Fax: +65 6478 9048 Institute
Website: www.bii.a-star.edu.sg
Company Registration Number: 19-9702109N
1
DIRECTOR’S
MESSAGE
Vladimir Kuznetsov | 16 Computational biology has entered a new era characterized is an example for this. To emphasize, experimental efforts
by the availability of fully sequenced genomes, as well as also have a place in BII (i) for the verification of theoretically
Vivek Tanavde | 18
increasingly complete gene expression and proteomics derived hypotheses (as a complement to interactions with
Igor Kurochkin | 20
datasets that wait for functional interpretation. In increasingly experimental teams in collaborating institutions) as well as
Imaging Informatics Division more instances, hypotheses about biomolecular mechanisms (ii) for the generation of datasets that are necessary for the
Lee Hwee Kuan | 22 from the data can be derived; thus, computational biology development of theoretical methods. For this purpose, BII
becomes instrumental to generate qualitatively new biological researchers heavily rely on co-operations with experimental
Martin Wasser | 24
insight. teams affiliated with other A*STAR institutes and elsewhere
IT SCIENTIFIC SERVICES in Singapore and the world. BII also has its own biochemical/
The Bioinformatics Institute, which was founded by Dr. cell-biological laboratory and a high-end microscopy unit.
Software Engineering | 26
Gunaretnam Rajagopal in 2001 and led by myself since
Bio-Computing Centre | 27
August 2007, is on its way to becoming a notable contributor The members of our institute are united in making this effort
of biologically relevant results and new, efficient computational a success and I invite you to join us in this endeavour that
Adjunct Scientists | 28
biology methods to the world-wide scientific effort in the will open new frontiers in biology.
Visiting Scientists | 29
search for yet unknown biomolecular mechanisms, an effort
Science Outreach Activities | 30
with the goal of applications in medicine and biotechnology. Dr. Frank Eisenhaber
Conferences and Visits | 31 For BII, the years 2007 -2009 are the time for launching a Director
Recreation Club | 32 new research program, for the start of new research teams Bioinformatics Institute
Administrative Team | 33
BII Location | 33
Director’s Message | 1
Matrix Building, Biopolis Photo by Vivek Tanavde, BII Reception Counter Photo by Vivek Tanavde, BII
2
3
Bioinformatics Institute Research Divisions
Located in the Biopolis, the Bioinformatics Institute (BII) was set up by the Agency for Science, Technology and Research (A*STAR) in July Bioinformatics is a multi-disciplinary approach combining computational and biological expertise to analyze biological data (both genomic
2001; it was re-launched in the autumn 2007 as a research institute for biomolecular mechanism discovery guided by computational biology and clinical), to advance biomedical research and development. Bioinformatics is both a science and an engineering art, concerned with
methods. the application of mathematics, physical/chemical principles and information technology to solve biological problems.
The spectrum of research activities in BII includes bioinformatics method development, experimental work for verification of hypotheses In the Bioinformatics Institute, there are four methodology-oriented research divisions comprising of research groups lead by independent
on gene function and collaborations with other experimental labs for biological data interpretation. Additionally, BII aims to provide Principal Investigators that focus on specific areas of computational biology. The common denominator is the goal of understanding
postgraduate training as well as regional resource support in bioinformatics, especially for the institutes of the Biomedical Research Council biomolecular mechanisms underlying cellular phenomena, which is the basis for a rational understanding of pathogenesis or for planning
(BMRC) of A*STAR. biotechnological applications.
Together with the BMRC, A*STAR research institutes and multinational R&D organizations in the Biopolis, the BII is situated in a conducive
environment for exchange of scientific knowledge and friendly interaction that will prompt greater collaborations, and position the Biopolis
as a notable biomedical R&D hub in Asia and in the world.
Research Divisions
MAURER-STROH &
relative to drug and antibody binding sites. Biol Direct. 2009 May Techniques for the Life Sciences. O.Carugo, and Eisenhaber,F.E.,
20;4(1):18. editors. Humana Press and Springer Business Media. New York. 129-
144.
Frank EISENHABER
5. Yamamoto Y, Ihara M, Tham C, Low RW, Slade JY, Moss T, Oakley AE,
Polvikoski T, Kalaria RN. Neuropathological correlates of temporal pole 18. Ooi,H.S., Schneider,G., Chan,Y.-L., Lim,T.-T., Eisenhaber,B., and
white matter hyperintensities in CADASIL. Stroke. 2009 Jun;40(6):2004- Eisenhaber,F. 2009. Databases of Protein–Protein Interactions and
Figure 1: 3D model of the 2009 H1N1 neuraminidase. The bound antiviral drug 11. Complexes. In Data Mining Techniques for the Life Sciences. O.Carugo,
is shown in green. Regions differing from the H5N1 avian flu and the 1918 H1N1 and Eisenhaber,F.E., editors. Humana Press and Springer Business
Postdoctoral Fellows: Spanish flu are shown in yellow. Mutations occurring among different patients 6. Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh Media. New York. 145-160.
CHEN Li; Vachiranee LIMVIPHUVADH; Roger LOW Wee Chuang; within the first weeks of the 2009 outbreak appear red. S, Wong WC, Schleiffer A, Eisenhaber F, Schneider G. ANNIE: integrated
MA Jianmin; Dimitar KENANOV de novo protein sequence annotation. Nucleic Acids Res. 2009 Jul 19. Schneider,G., Wildpaner,M., Sirota,F.L., Maurer-Stroh,S., Eisenhaber,B.,
1;37(Web Server issue):W435-40. and Eisenhaber,F. 2009. Integrated Tools for Biomolecular Sequence-
Research Associates: Based Function Prediction as Exemplified by the ANNOTATOR Software
HAN Hao; WONG Wing Cheong; Raphael LEE Tze Chuen; 7. Wong WC, Cho SY, Quek C. R-POPTVR: A novel reinforcement-based Environment. In Data Mining Techniques for the Life Sciences. O.
POPTVR fuzzy neural network for pattern classification. IEEE transactions Carugo, and Eisenhaber,F.E., editors. Humana Press and Springer
NEO Keng Hwee; Swe Swe THET PAING
on neural networks, 2009 Jul 5; v20, n11, pp1740-1755 Business Media. New York. 257-268.
8. Van Durme J, Maurer-Stroh S, Gallardo R, Wilkinson H, Rousseau F, 20. Sohail A, Wenyu B, Lee RTC, Maurer-Stroh S and Wah IG. F-BAR
Schymkowitz J. Accurate prediction of DnaK-peptide binding via domain proteins: families and function. Communicative & Integrative
homology modelling and experimental data. PLoS Comput Biol. 2009 Biology, in press.
Protein Sequence Analysis Aug;5(8):e1000475.
21. Sirota FL, Ooi HS, Gattermayer T, Schneider G, Eisenhaber F and
Based primarily on protein sequence analysis and the analysis of 9. Zhao C, Zhang H, Wong WC, Sem X, Han H, Ong SM, Tan YC, Yeap Maurer-Stroh S. Parameterization of disorder predictors for large-scale
WH, Gan CS, Ng KQ, Koh MB, Kourilsky P, Sze SK, Wong SC. applications requiring high specificity by using an extended benchmark
other sequence-associated data (for example, from functional
Identification of novel functional differences in monocyte subsets using dataset. BMC Genomics, in press.
genomics and proteomics studies), the various aspects of molecular proteomic and transcriptomic methods. J Proteome Res. 2009
and cellular function (enzymatic activities, posttranslational Aug;8(8):4028-38. 22. Limviphuvadh V, Chua LL, Eisenhaber F, Adhikari S, Maurer-Stroh S.
modifications, cleavage, translocation signals, 3D structures, effects Is LGI2 the candidate gene for partial epilepsy with pericentral spikes?
10. Eisenhaber F, Kwoh CK, Ng SK, Sung WK, Wong L. Brief overview of Journal of Bioinformatics and Computational Biology, in press.
of mutations, pathway relationships, etc.) are predicted. This
bioinformatics activities in Singapore. PLoS Comput Biol. 2009
biological insight can then be used for planning experimental Sep;5(9):e1000508. 23. Kawase-Koga Y, Low R, Otaegi G, Pollock A, Deng H, Eisenhaber F,
validation experiments in cooperation with collaborators from other Maurer-Stroh S, and Sun T. RNAase III enzyme Dicer maintains signaling
institutes or in the division’s own protein biochemical laboratory. 11. Papan C, Chen L. Metabolic fingerprinting reveals developmental pathways for differentiation and survival in mouse cortical neural stem
The publication of Maurer-Stroh et al. “Mapping the sequence mutations of the regulation of metabolites during early zebrafish embryogenesis. OMICS. cells. Journal of Cell Science, in press.
2009 H1N1 influenza A virus neuraminidase relative to drug and antibody binding 2009 Oct;13(5):397-405.
Our group has covered a wide range of projects during the last year, sites” in Biology Direct (2009) was a highlight since it drew the attention of the 24. Maurer-Stroh S, Debulpaep M, Kuemmerer N, Lopez de la Paz M,
from a proteomic analysis of neural cortical stem cells in dicer scientific and lay public to BII for its scientific work. The finding that drug resistant 12. Zhang G, Liu T, Wang Q, Chen L, Lei J, Luo J, Ma G, Su Z. Mass Martins IC, Reumers J, Copland A, Serpell L, Serrano L, Rousseau F,
knock-out mice, over the identification of an epilepsy candidate strains are almost absent from the circulating H1N1 virus population was of spectrometric detection of marker peptides in tryptic digests of gelatin: Schymkowitz JWH. Exploring the sequence determinants of amyloid
general medical importance. This paper has been downloaded by about 11,000 A new method to differentiate between bovine and porcine gelatin. Food structure using position-specific scoring matrices. Nature Methods,
gene, to the prediction of amyloid fibre-forming peptides. As a readers since May 2009; thus, it is the most accessed publication on Biology
Hydrocolloids Volume 23, Issue 7, 2009 Oct, Pages 2001-2007 accepted.
characteristic example of our work, the analysis of the new swine- Direct during the last 12 months and it belonged to the 10 most viewed articles
in Biomed Central (having more than 200 journals) during May 2009.
origin H1N1 influenza virus has been among the first published 13. Ranganathan S, Eisenhaber F, Tong JC, Tan TW. Extending Asia Pacific
scientific works during the pandemic outbreak. We concluded that, bioinformatics into new realms in the “-omics” era. BMC Genomics.
although the virus belongs to a new subtype variety, the mutations 2009 Dec 3;10 Suppl 3:S1.
tend to not affect the potency of neuraminidase-inhibiting drugs Dr Vachiranee Limvipuvadh
but merely change the antigenic properties of the virus proteins. et al received the “Best Principal Investigators’ Biographies
Poster Award” for their
poster entitled “Analysis Sebastian Maurer-Stroh studied theoretical biochemistry in the group of Peter Schuster at the University of Vienna and wrote his master and PhD thesis while
We have been critically involved in the establishment of an efficient of the molecular working in Frank Eisenhaber’s lab at the Institute of Molecular Pathology (IMP) in Vienna. After a Marie Curie Postdoc fellowship at the VIB-SWITCH lab in
analysis pipeline of viral sequences in Singapore that was later also mechanisms of known and Brussels, he joined the A*STAR Bioinformatics Institute (BII) in Singapore where he is heading the Protein Sequence Analysis Group in the Biomolecular
predicted disease Function Discovery Division since 2007. He has contributed widely used predictors for posttranslational modifications and catalyzed new biomolecular insights
extended to partners in Mexico from the Instituto Nacional de mutations in LGI epilepsy by sequence-based function predictions. (Details: http://www.bii.a-star.edu.sg/research/biography/sebastianms.php)
Medicina Genomica, the leading genome institute studying the virus genes” during the 8th
sequences close to the source of the outbreak. Our immediate International Conference
Frank Eisenhaber’s research interest is focused on the discovery of new biomolecular mechanisms with theoretical and biochemical approaches and the
on Bio-informatics held in
collaborators include the local hospitals and Singapore’s Ministry Biopolis, Singapore from functional characterization of yet uncharacterized genes and pathways. Frank Eisenhaber is one of the scientists credited with the discovery of the SET domain
of Health for samples and GIS A*STAR for the sequencing. The 7 to 11 September methyltransferases, ATGL, kleisins, many new protein domain functions and with the development of accurate prediction tools for posttranslational modifications
2009. and subcellular localizations. He studied mathematics at the Humboldt-University in Berlin and biophysics and medicine at the Pirogov Medical University
particular contribution of our group is the surveillance of the ongoing in Moscow. He received the PhD from the Engelhardt Institute of Molecular Biology in Moscow. After postdoctoral work at the Institute of Molecular Biology
evolution of the 2009 H1N1 influenza A virus and the effect that in Berlin-Buch (1989-1991) and at the EMBL in Heidelberg (1991-1999), he worked as teamleader at the Institute of Molecular Pathology (IMP) in Vienna
mutations could have on the biology of the virus, the severity of (1999-2007). Since August 2007, he is the Director of the Bioinformatics Institute, A*STAR Singapore. (Details: http://www.bii.a-star.edu.sg/research/
infection and the applicability of available antiviral drugs. biography/franke.php)
Sharmila ADHIKARI
Postdoctoral Fellows:
Neelagandan KAMARIAH; Subhashri RAMABADRAN;
TOH Yew Kwang; XIN Hongyi
Research Associates: Left to Right: Dr. Sebastian Maurer-Stroh, Mr. Lim Chuan Poh(Chairman, A*STAR),
Michaela SAMMER; GUO Fusheng; Nicholas HO Rui Yuan; Dr. Sharmila Adhikari, Dr. Vachiranee Limviphuvadh
LUA Wai Heng; LIEW Lailing; Winnie TAY Yu Ling Photo by Bernard Chan, A*STAR
Ivana MIHALEK
of the size of the modern Protein Data Bank. From the onset of the
Information Era people have assembled and deposited, information
about tens of thousands different protein structures, from all
kingdoms of life, mostly coming from X-ray crystallography and
Postdoctoral Fellows: nuclear magnetic resonance experiments. Sorting through this
Kavitha Bharatham; Westley A. Sherman volume of data, in order to find relevant biological answers is an
Research Associates: interesting problem for a computer inclined scientist. While computer
ZHANG Zong Hong; Sharon CHEE Min Qi science teaches us how to retrieve efficiently a well defined entry Figure 2: Detecting a structure of unknown function (deposited in Protein Databank
under identifier 3dcx; blue) as a substructure of protein involved in cell adhesion,
in a large database, biologically interesting answers are often to be called radixin (1gc6; red).
find in a twilight zone of loosely defined (from the computational
perspective) hits. Designing algorithms that balance the conflicting
requirements of efficiency and non-triviality of the search is currently by downstream computer applications? As the underlying quantity
EVOLUTION OF PROTEIN the focus of independent research in our group. of data increases, processing them becomes an ever larger task,
STRUCTURE AND FUNCTION Figure 1: The correlation between the degree of conservation of a protein region
and the impact the mutation has on the organism is most readily observable in We are in the process of developing a set of methods, together with
but the reward lies in the promise of giving ever more focused
the case of enzymes, small chemical factories that are a very common type of answers to scientific queries.
The aim of Evolution of Protein Structure and Function (EPSF, not the accompanying server (http://epsf.bmad.bii.a-star.edu.sg/struct_
protein. In the illustration in Figure 1 (from an enzyme, called HPPD, from the
to be confused with Encapsulated PostScript Format) group is to tyrosine degradation pathway), the most highly conserved regions (yellow) cannot server.html) to handle precisely this type of a problem. The main
reverse engineer the function of a protein through studying its be mutated without causing the organism's demise, while the slightly less conserved theme of the approach is to deconstruct the protein structure from EPSF Group in the Scienceland
evolution. Bioinformatics is used to get the first inkling of the layout regions (red), if mutated, cause health problems of various degrees of severity.
its gross structural features, such as the relative orientation of its The main role of a bioinformatician is sieving through the existing
and mechanism of these biological nanomachines, and computer elements of secondary structure (helices and strands) down to the (already daunting and relentlessly growing) amount of biological
simulation to test, to the extent it currently allows, the reasonableness What is the function of a functionally relevant piece minutiae of its atomic makeup, and use them in that order to retrieve, data and finding facts pertinent to the problem at hand. Working
of the interpretation of bioinformatics data. Ultimately, the goal is of protein structure? and sort by relevance, similar pieces of structure, appearing either in protein science, we are lucky enough to be able to push that
to build a straightforward hypothesis which can then be tested Even in the situations when the conserved regions on the protein as complete entries in Protein Data Bank, or as a substructure search a step further through explicit simulation of the physical
experimentally. Therefore, serious effort is invested into developing are clearly discernible, their functional role may be difficult to thereof. The trick, of course, is to explain to the computer how this systems in question. Immediate goals aside, as computational
ways to present the group’s findings in the most useful and compact interpret. Sometimes this task can be relegated to the experiment. is to be done, without losing the underlying ideas to the weak biologists we are trying to push forward the point at which the
way to experimentalist colleagues. For example, in a study of a protein called Ku (from the large group implementation. This is the point at which we put on our computer experiment needs to be invoked. Ultimately, we are biologists, and
of telomere-related proteins) the conservation map pointed to several scientist’s hat. Next, biology comes into play: how do we keep the consider our contributions to the experimentally testable work our
How evolution chisels out functionally relevant pieces regions, which seemed quite mysterious. The results were turned search general enough to give useful answers to molecular biologists most important accomplishments.
of a protein? straight away to experimental colleagues who were able to establish, specializing in different proteins and pathways? How do we use our
through the site directed mutagenesis, that several pathways were findings as a bridge to more of the existing knowledge, and yet
In evolution, as in any statistical process, anything that can happen
critically affected, distinct pathways intriguingly assorting with present the results in a way that is parseable both by a human and
will happen. Compared, however, to the options open to a simple
physical system, “can happen” is a somewhat more elaborate distinct protein regions.
condition. While the physics of DNA stability may allow for a
mutation, this mutation might severely degrade the stability of the However, it would be desirable to elucidate the role of such regions
protein it encodes, which in turn may kill the organism carrying the in silico, thus focusing the experimental work even more narrowly. Recent Publications
mutation. A mutation at a different position might be irrelevant to Several options are open to a computational biologist at this point, 1. Wang H, Chumnarnsilpa S, Loonchanta A, Li Q, Kuan YM, Robine S, 4. Mihalek, I., I. Res, and O. Lichtarge.” Evolutionary Trace Report
the protein stability, but it may adversely impact its interaction with depending on the available information about the protein: if the Larsson M, Mihalek I, Burtnick LD, Robinson RC. Helix straightening Maker: a new type of service for comparative analysis of proteins.”
structure is known, computer simulation might shed some light on as an activation mechanism in the gelsolin superfamily of actin Bioinformatics. 2006 Jan 15;22(2):14956.
another protein, thus disrupting a pathway in the hapless
its role in structural changes the protein undergoes, the small regulatory proteins. J Biol Chem. 2009 Aug 7;284(32):21265-9.
organism. 5. Mihalek, I., I. Res, O. Lichtarge..”A Family of EvolutionEntropy
ligands it binds, and interaction with other proteins it engages in. 2. RibesZamora A, Mihalek I, Lichtarge O, Bertuch AA. “Distinct faces Hybrid Methods for Ranking of Protein Residues by Importance”
of the Ku heterodimer mediate DNA repair and telomeric functions.” J. Mol. Bio. 336(5): 126582(2004).
Keeping that scenario in mind, a comparison of proteins performing
Nat Struct Mol Biol. 2007.
the same function in living and thriving organisms can be done, In our group we use the existing software as a tool to conduct
identifying the regions in the protein in which mutations, or certain computational experiments designed to test our and our collaborators’ 3. Mihalek I, Res I, Lichtarge O. “On itinerant water molecules and
hypotheses about protein function. detectability of protein-protein interfaces through comparative
types of mutations, are conspicuously absent. Since it can reasonably analysis of homologues.” J Mol Biol. 2007 Jun 1;369(2):58495.
assumed that mutations do happen sporadically in those places, as
they do in all underlying positions in the DNA, it is possible that Similar Structure – Similar Function?
the carriers were eliminated from the gene pool because the mutation Very similar protein structures often signal a very similar function Principal Investigator’s Biography
resulted in some disadvantage for the organism, be it on the irrespective of the level of sequence similarity. The rule is not Ivana got her undergraduate degree in physics from U. of Zagreb, Croatia (1993), and her PhD in Physics (2000) and MSc (2001) in computer science
translational, folding, or protein-protein interaction level. Therefore, infallible, and contrary examples exist of both the similar structures from U. of Kentucky, USA. She worked as a postdoctoral fellow in bioinformatics in Baylor College of Medicine, Houston, USA until 2007, when she joined
these are precisely the regions crucial for the protein function, the carrying a different function, and of the so termed convergent BII. (Details: http://www.bii.a-star.edu.sg/research/biography/ivanam.php)
regions we should focus our attention to. evolution in which similar functions are performed by different
structures. The latter case can be recognized by a certain degree
in local similarity of the structure. We have recently started pursuing
Mallur Srivatsan templates was studied. Our results showed that while small errors
in alignment accuracy did not change the prediction of stability,
MADHUSUDHAN the use of multiple templates improved upon the prediction accuracy Figure 2: On the left is the 3D structure of the protein assembly of two proteins
that are a part of the cellulosome from clostridium thermocellum (PDB code 1aoh,
of models built using single templates. chains A and B; grey and purple respectively). The interacting interfaces between
the two proteins are shown in yellow and green. CLICK was used to detect regions
Postdoctoral Fellows: 2. Aligning the 3D structures of proteins independent on other proteins that are similar to these interacting interfaces. A region similar to
interface in 1aohA was found in 1g7kA (right, top), and a region similar to interface
Debashree BANDYOPADHYAY; NGUYEN Ngoc Minh of their topology in 1aohB was found in 1g7kB (right, bottom). The crystal structure of the complex
of 1g7k, a red fluorescent protein from coral, shows similar interface association
Research Associates: We devised a new algorithm, CLICK, to align the 3D structures of to 1aoh. 1aoh and 1g7k belong to different protein families and their overall 3D
Rowena CHEONG Wai Sim; TAN Kuan Pern proteins using their Cartesian coordinates, secondary structure fold is different. Though the interaction interface regions are topologically different,
content and residue-wise surface accessible areas. CLICK aligns CLICK is able to detect their structural similarity.
pair of protein structures independent of their topology. This is a
powerful method to investigate structural similarity across protein
folds and protein families. CLICK is effective in not only giving the
Modeling the 3D Structures optimal alignment between two protein structures but can also in
detecting conformational changes, such as domain motions and
of Proteins and their rigid body shifts. The method was extensively benchmarked on
Complexes several datasets of pairs of structurally similar proteins, both
topologically similar and topologically dissimilar. The method was
The broad aim of our group is to develop and apply computational also compared with other frequently used structure alignment
tools to model the structural biology of molecular interactions in algorithms. CLICK performs at the same level of accuracy as these
the living cell. To this end, we combine the laws of physics with other methods, if not statistically significantly better. We are now
experimental observation and statistics to develop computational using CLICK to detect small molecule binding sites on proteins
methods in structural biology. The methods are tested, often in (figure 1), and protein-protein interaction interfaces on proteins
close collaboration with experimental biologists, on particular systems (figure 2). The application of CLICK is not restricted to aligning
of interest. Our research results in detailed information of cellular protein structures. The algorithm can be readily generalized and Figure 1: The 3D structures of A.fulgidus Rio2 Kinase (PDB code 1zao; magenta) Figure 3: 3 Camelid VHH domains AMB7 (blue), AMD10 (orange) and AMD9
processes and provides testable hypotheses that can then be verified and purt-encoded glycinamide ribonucleotide transformylase (PDB code 1kj9; (green) bind to porcine pancreatic α-amylase (PPA, gray surface) through three
used to align the 3D structures of any two molecules, such as DNA, cyan) are superimposed using CLICK. The two proteins are unrelated by protein
experimentally. In particular, we are interested in the following or RNA. fold, function, or sequence. The regions of structural similarity between the two
distinct binding modes (PDB codes 1kxt, 1kxv, and 1kxq, respectively). All three
interaction modes were evaluated for each VHH–PPA complex using the interface
problems: proteins lie in their ATP binding sites. The inset shows the similarities (dashed statistical potential. The statistical potential is sensitive enough to distinguish
blue lines denote hydrogen bonds) in the interaction between the proteins and
3. Predicting protein-protein interactions the ATP molecules that have been bound to them. The conformation of the bound
the native binding modes from the non-native modes.
1. Improving the accuracy of comparative protein ATP is similar in both proteins. These similarities are despite the aforementioned
Homology modeling is used to construct the models of target
structure modeling and functional annotation interacting protein complexes. The method predicts the protein
differences between the proteins.
We are developing methods to accurately align protein sequences constituents of the interacting complex and its 3D structure. The
to protein structures. Accurate alignments are key to accurately 3D structures of these complexes are modeled using the structural
modeling the 3D models of proteins. These efforts include using a similarity of the target proteins to constituents of known (template) Recent Publications
structure based environment dependent gap penalty function protein domain-domain interactions [Davis et al., 2006, Pieper et 1. Madhusudhan MS, Webb BW, Marti-Renom MA, Eswar N, Sali A. 4. Pieper U, Eswar N, Davis FP, Braberg H, Madhusudhan MS, Rossi A,
[Madhusudhan et al., 2006, Madhusudhan et al., 2009], and al., 2005]. The complexes predicted are not restricted to pairs of Alignment of multiple protein structures based on sequence and Marti-Renom M, Karchin R, Webb BM, Eramian D, Shen MY, Kelly L,
substituting single sequences with their profiles during the alignment proteins. If multi-domain templates are present, multi-component structure features. Protein Eng Des Sel. 2009 22, 569-74. Melo F, Sali A. MODBASE: a database of annotated comparative protein
structure models and associated resources. Nucleic Acids Res.
process. interacting protein complexes are predicted. The complexes are 2. Bajaj K, Madhusudhan MS, Adkar BV, Chakrabarti P, Ramakrishnan C, 2006;34(Database issue):D291-5.
assessed using a statistical potential constructed from residue Sali A, Varadarajan R. Stereochemical criteria for prediction of the effects
Methods that improve on modeling accuracy are often beneficial in contacts across known protein domain-domain interfaces. Prediction of proline mutations on protein stability. PLoS Comput Biol. 2007; 5. Madhusudhan MS, Marti-Renom MA, Sanchez R, Sali A. Variable gap
3(12):e241. penalty for protein sequence-structure alignment. Protein Eng Des Sel.
improving the accuracy of functional annotation of proteins. scores were calibrated for reliability. On a benchmark set of 100 2006; 19(3):129-33.
Previously, we tested a decision tree based approach to predict the interactions, the statistical potential accurately predicted interactions 3. Davis FP, Braberg H, Shen MY, Pieper U, Sali A, Madhusudhan MS.
structural/functional stability of single point mutants [Bajaj et al., in 97 cases. The method is also capable of distinguishing between Protein complex compositions predicted by structural similarity. Nucleic
Acids Res. 2006 34(10):2943-52
2007], starting with the crystal structure of the native protein. We alternate modes of binding (Figure 3). Additional information, such
extended the stability predictions to be made using homology models as functional annotation, and sub-cellular localization can be used
instead of experimental structures. The stability prediction method to enhance reliability. We are now developing methods that a) Model
was also improved upon, with additional branches to the decision protein interactions without the aid of full-length (entire domain Principal Investigator’s Biography
tree that incorporated evolutionary information in the form of coverage) templates and b) Model all biological complexes, not M. S. Madhusudhan joined the Bioinformatics Institute as a Principal Investigator in 2008. He received a Masters degree in Physics from the University of
sequence conservation. The effect of alignment errors on the decision restricted to protein interactions. Pune and a PhD in Biophysics from the Molecular Biophysics Unit, Indian Institute of Science. This was followed by post-doctoral work in the lab of Andrej
Sali at the Rockefeller University and University of California, San Francisco. (Details: http://www.bii.a-star.edu.sg/research/biography/madhusudhan.php)
16 1759 complex gene architectures. For the first time, we found strong
significant overrepresentation of human miRNA genes in loci of
CASGPs. Using USA GP, we found Structural-Functional Modules
Vivek TANAVDE
Research Associates:
Betty TAN Bee Tee; LEE Qian Yi; Michelle KWAN Kah Yian
as its hub (Koh et al BMC Genomics 2010). The HNF4A gene
has no predicted miRNA binding sites in its untranslated region.
However using next generation sequencing we were able to
predict and experimentally verify that let-7 family of miRNA
Expression and Signaling indirectly regulates expression of HNF4A.
Hematopoietic Stem Cells into bone cartilage and fat. miRNA’s have been shown to be
the dataset of genes with overlapping regions corresponding to peaks from previous
mapping.
interaction networks in Figures 1 and 2, with HNF4A as a node amongst the
interactions suggesting HNF4A as a possible downstream target for let-7 family
important regulators of differentiation in embryonic and miRNAs.
Adult stem cells have the potential to differentiate into a wide variety hematopoeitc stem cells. In this project we aim to identify
of tissue specific cells. These cells can therefore be used to treat differentially expressed miRNAs in fetal limb derived MSC as
a variety of disorders ranging from myocardial infarction to they differentiate into bone cartilage and fat. The miRNA
osteoporosis. Mesenchymal stromal cells (MSC) which are the non expression profile coupled with mRNA expression profile of the
hematopoietic cells found in the marrow have been used in many Recent Publications
same cells will enable us to identify miRNAs that are critical in
such therapies. Although these cells are already being used clinically, 1. Winston Koh, Chen Tian Sheng, Betty Tan, Qian Yi Lee, Vladimir Kuznetsov, 4. Ng F,.Boucher, S, Koh S, Sastry K. S., Chase L, Lakshmipathy U, Choong
trilineage differentiation of MSC & the genes and signaling Lim Sai Kiang, Vivek Tanavde. (2010) Analysis of Deep sequencing C, Yang Z, Vemuri M. C, Rao M. S, Tanavde, V.(2008) PDGF, TGF-b and
we know very little about the mechanisms these cells use to pathways they target (direct as well as indirect targeting) to microRNA expression profile from human embryonic stem cells derived FGF signaling is important for differentiation and growth of mesenchymal
differentiate to different lineages. My group aims to understand achieve this regulation. mesenchymal stem cells reveals possible role of let-7 microRNA family stem cells (MSCs): transcriptional profiling can identify markers and
signaling pathways involved in mesenchymal stromal cell in downstream targeting of Hepatic Nuclear Factor 4 Alpha. BMC signaling pathways important in differentiation of MSC into adipogenic,
differentiation and how these pathways are regulated. For this Genomics (In Press) chondrogenic and ostoegenic lineages. Blood. 112(2):295-307
4. Identification of tranlsationally regulated genes in embryonic
purpose we developed an approach to gather information about stem cell differentiation. In this study we were able to successfully 2. Lai RC, Arslan F, Tan SS, Tan B, Choo A, Lee MM, Chen TS, Teh BJ, 5. Shah VK, Desai AJ, Vasvani JB, Desai MM, Shah BP, Lall TK, Mashru
cellular signaling from gene expression data. Using this approach, identify translationally regulated genes in differentiating human Eng JK, Sidik H, Tanavde V, Hwang WS, Lee CN, Oakley RM, Pasterkamp MR, Shalia KK, Tanavde V, Desai SS, Jankharia BJ. (2007) Bone marrow
we identified 3 pathways critical for MSC growth and differentiation. embryonic stem cells using microarray. This project is being G, de Kleijn DP, Tan KH, Lim SK. (2010) Derivation and characterization cells for myocardial repair-a new therapeutic concept. Indian Heart J.
We are also using this approach to understand differentiation of of human fetal MSCs: An alternative cell source for large-scale production 59(6):482-90.
carried out in collaboration with Prabha Sampath at Institute
embryonic stem cells. Currently my laboratory is also involved in of cardioprotective microparticles. J Mol Cell Cardiol. (In Press)
of Medical Biology, A*STAR. 6. P. Shetty, K. Bharucha, V. Tanavde (2007) Human umbilical cord blood
understanding the role of micro RNAs (miRNAs) in MSC 3. Vivek M. Tanavde, Lailing Liew, Jiahao Lim and Felicia Ng (2009) serum can replace fetal bovine serum in the culture of mesenchymal
differentiation. 5. Identification of differentially expressed signaling pathways in Signaling Networks in Mesenchymal Stem Cells. In: Regulatory Networks stem cells. Cell Biol International 31.293-298.
Lamin A mutants. Lamin A is a protein that controls movement in Stem Cells, V.K. Rajasekhar, M.C. Vemuri (eds.), Humana Press.
Projects: of macromolecules across the nuclear membrane. Using
1. Development of serum free medium for culturing MSC. This microarray, we identified differentially expressed genes in Lamin
project was carried out in collaboration with Invitrogen. Using A mutant cells subjected to stress. This enabled us to predict
time course gene expression analyses of differentiating MSC, the signaling pathway responsible for the Lamin A mutant
we identified three pathways critical for growth and differentiation phenotype. This project is being carried out in collaboration Principal Investigator’s Biography
of MSC (Ng et al Blood 2009). This information was used to with Colin Stewart at Institute of Medical Biology, A*STAR.
Dr. Vivek Tanavde joined the Bioinformatics Institute, Singapore as a Research Scientist in the Genome & Gene Expression Data Analysis in 2006. Prior to
develop STEMPRO® MSC-SFM, the first commercially available joining BII, he was heading the Hematopoietic Stem Cell Lab at Reliance Life Sciences, Mumbai where his work focused on developing mesenchymal stromal
serum free medium for culturing MSC. 6. Identification of biomarkers for assessing response of toxic cell based therapies for cardiac and neuronal disorders. From 1999 to 2002 he was a post doctoral fellow with Dr. Curt Civin at the Sidney Kimmel Cancer
compounds to human and murine embryonic stem cells. Embryonic Centre, Johns Hopkins University working on expansion of hematopoietic stem cells from umbilical cord blood. Dr. Tanavde obtained his Ph.D from the Cancer
2. Identification of miRNAs secreted by MSC and their role in stem cells have the potential to serve as valuable tools to test Research Institute, Mumbai (1999) in Applied Biology. (Details: http://www.bii.a-star.edu.sg/research/biography/vivek.php)
indirect regulation of signaling networks. This project was carried toxicity of different compounds. As models of embryonic stem
out in collaboration with Sai Kiang Lim from the Institute of cell differentiation develop, our ability to use this information to
Medical Biology (IMB). Her group had sequenced small RNAs screen compounds that affect these differentiation processes
found intracellularly as well secreted by MSC in exosomes. We should also improve. In this project we aim to identify biomarkers
identified differentially secreted miRNAs from the next generation for assessing the toxic response of a drug to neuronal differentiation
sequencing data & showed that the let-7 family of miRNAs of MSC. This project is carried out in collaboration with Suzanne
regulated a network of genes with the transcription factor HNF4A Kadereit, University of Konstanz.
Igor KUROCHKIN
differentiation of human neuroblastoma cell line SH-SY5Y. A custom-
built oligonucleotide microarray profiling revealed that a small
fraction of lncRNAs was highly regulated. A large part of these
transcripts mapped to the intronic regions of the protein-coding
Postdoctoral Fellows: genes. About 21% of the intragenic lncRNAs mapped to the
Antonis GIANNAKAKIS; Aliaksandr YARMISHYN annotated genes in antisense direction, in line with the previous
reports that over 20% of human transcripts might form sense-
antisense pairs. Most of these antisense lncRNAs correlated positively
in their expression pattern with the sense strand of the genes with
a small minority showing negative correlation. Figure 1: Expression of a novel intergenic lncRNA associated with HOXD cluster genes is significantly induced during neuronal differentiation of human neuroblastoma cells.
Martin WASSER
proliferation that cannot be easily gained from observations of
cultured cells in Petri dishes. Drosophila embryos are a powerful
system in which the dynamics of synchronized nuclear as well as
non-synchronized cell division can be easily monitored by tagging
Postdoctoral Fellows: chromosomes with fluorescent fusion proteins. 3D movies acquired
Rambabu CHINTA; Janos KRISTON-VIZI; DU Tiehua by time-lapse microscopy are not only pretty to look at but also
Research Associates: provide a rich source of quantitative cellular features, such as DNA
PUAH Wee Choo; Gina PAN Jinghong; TAN Joo Huang; content, which combined with derived categorical features, such
Rahul KUMAR as the cell cycle phase, will be useful in characterizing the function
of known and unknown genes. However, the task of analyzing colossal
amounts of multi-dimensional image data is not trivial. To address
this challenge we have developed collection of tools for image Figure 2: Automated 3D nuclear segmentation method.
segmentation, feature extraction, tracking, classification, visualization,
Live Cell Imaging and annotation, validation of computer vision algorithms and file
Automation of Image Analysis conversion. Image measurements rely heavily on the accuracy of
the chosen segmentation algorithm. We have developed a fast 3D
The group is interested in studying animal development using 3D nuclear segmentation method that adapts to inhomogeneous signal
time-lapse microscopy and computer vision. Their principal goal is intensities, poor signal to noise ratios and histone-GFP localized to
to build image analysis systems that can recognize tissues, cells the cytoplasm (Figure 2). To improve the performance of computer
and organelles in multi-dimensional image data and measure their vision methods and to support biological interpretation, we apply
static and dynamic properties. The major research activities are machine learning for cell cycle phase classification (Figure 3). To
directed at constructing the components of a computational pipeline test our approach in the phenotypic characterization of gene function
and integrating them into semi-automated image analysis systems. we applied our image analysis pipeline to 3D live cell movies of
Computational pipelines cover preprocessing, segmentation, feature diploid wildtype and haploid mutant embryos. Our analysis has
extraction, classification and cell tracking. Currently, the efforts are provided new insights into the function of the maternal haploid
directed at the phenotypic characterization of two biological processes gene and the control of the size of the nucleus.
in the model system Drosophila melanogaster; (1) Cell cycle
progression of embryonic cells and (2) apoptosis and remodeling Tissue Destruction and Remodeling in
of muscle cells during metamorphosis.
Metamorphosis
The second biological theme is the destruction and remodeling of
In 2009, BII acquired a Zeiss 5 Live high-speed confocal laser scanning
tissues during metamorphosis. The group focuses on the muscular
microscope (Figure 1). This instrument will enhance the group’s ability
system and uses fluorescence live cell imaging to study apoptosis
to produce images of live cells in sufficient quality and quantity to
of obsolete and remodeling of persistent larval into adult muscles.
support algorithm development as well as biological discovery.
The structural organization of muscles is accompanied by initially
decreasing and later increasing thickness of the muscle fiber.
Therefore, studying the dynamics of muscle remodeling in flies Figure 3: Machine learning techniques are used for automatic phenotypic classification. Here cell cycle phases are assigned to segmented nuclei.
might evolve into an animal model for muscle atrophy and hypertrophy.
A challenge in studying developmental by 3D time-lapse microscope
is that rapid tissue movements can affect visualization and
Recent Publications
quantitative analysis. To overcome this problem, a non-rigid stack 1. Ong SM, Zhao Z, Arooz T, Zhao D, Zhang S, Du T, Wasser M, van Noort 3. Du Tiehua and Wasser Martin (2009). 3D Image Stack Reconstruction
D, Yu H (2009). Engineering a scaffold-free 3D tumor model for in in Live Cell Microscopy of Drosophila Muscles and its Validation.
registration method was developed. In an Editorial of Cytometry A vitro drug penetration studies. Biomaterials, [Epub ahead of print]. Cytometry A. 2009 Apr, 75(4): 329-43.
(75A:279281, 2009), this study was highlighted as “a true
masterpiece of cell analysis”. 2. Rambabu Chinta, Wee Choo Puah, Martin Wasser (2009). 3D segmentation 4. Wasser Martin, Zalina Bte Osman, Chia, William (2007). “EAST and
for the study of Cell Cycle Progression in Live Drosophila Embryos. Chromator control Muscle Destruction and Remodeling in Drosophila
International Conference on Biomedical Electronics and Devices, First Metamorphosis”. Developmental Biology, Vol. 2, 380-393.
International Workshop on Medical Image Analysis and Description for
Diagnosis Systems - MIAD 2009, Porto, Portugal, 14-17 Jan 2009. 5. Wasser, Martin and Chia, William (2007). The extrachromosomal EAST
Protein of Drosophila can associate with Polytene Chromosomes and
regulate gene expression. PLoS ONE 2: e412.
IT Scientific SErvices
Bio-Computing Centre
Team Leader:
YONG Tai Pang
Team Members:
Caleb KHOR Ken Swee, Zahari Jeffrey, Johnny LIM Gek Wee,
CHAN Ang Loon, Charlie TAN Chee Khiong,
TOE Chin Siang, HARRON Hanafi and Violet LIN Liling.
A/Prof. Gerhard Grüber Dr. Nathan Andrew Baker Dr. Kristian Vlahovicek
Prof. Roger Beuerman
Associate Professor and Deputy Head, Associate Professor Head of the Division of Biology
Senior Scientific Director,
Division of Structural and Dept. of Biochemistry and Molecular Biophysics Bioinformatics Group
Singapore Eye Research Institute
Computational Biology, Center for Computational Biology Department of Molecular Biology
Professor, SRP in Neuroscience and
School of Biological Sciences, Washington University Division of Biology Faculty of Science
Behavioral Disorders,
Nanyang Technological University St. Louis, USA University of Zagreb, Croatia
Duke-NUS Graduate Medical School
Visit Period: 6 - 8 April 2009 Visit Period: 22 October 2009
Prof. Roger Beuerman’s team at the Singapore Eye Research Institute A/Prof. Gerhard Grüber has longstanding experience in structure-
(SERI) has with Dr. Chandra Verma’s group at BII developed novel function of multi-subunit complexes like the classes of ATP synthases Dr. Gary McMaster Prof. Constantino Tsallis
antimicrobials for some of the most resistant forms of bacteria and (A1AO ATPsynthase, F1FO ATPsynthases) and hydrolases (V-ATPase, Chief Scientific Officer Professor
also fungus. The combination of ocular chemo-molecular abilities Helicase and AAA-ATPases). In order to get insight into the structure Affymetrix, Inc., Fremont, California, USA Brazilian Center for Physics Research
with the computational design efforts of Dr. Verma’s group has been of these macromolecular complexes, techniques like solution X-ray Visit Period: 23 April 2009 Brazil
very productive. They have, over the last 5 years, successfully scattering, X-ray crystallography, NMR- and fluorescence spectroscopy Visit Period: 14 - 22 November 2009
developed unique molecules which formed the basis of two patents. are used in his laboratory. In a collaborative project with Dr. Frank Prof. Patrice Koehl
They have received around SGD$3M in grants from the Singapore Eisenhaber (BII, A*STAR) the 45 kDa subunit PIG-K of the Professor, Computer Science Prof. Frederic Rousseau
government in support and have generated considerable commercial glycosylphosphatidylinositol transamidase complex was generated, Associate Director of Bioinformatics Group Leader
interest. Most recent, they have designed a molecule that has shown purified and the first low resolution solution structure of this protein
Genome Center, University of California, USA Flanders Institute for Biotechnology (VIB)
spectacular activity against bacteria from patients that have shown has been determined. Since two successful years of collaboration
Visit Period: 18 May 2009 Free University of Brussels
resistance to commonly used antibiotics. This is opening up a new with Dr. Chandra Verma (BII, A*STAR), a platform has been generated
Belgium
frontier in efforts to tackle the growing problem of bacterial resistance, to implement the experimental structural data into docking and
both in the clinic, and, worryingly, more recently, outside the clinic. molecular dynamics in order to provide an atomic level insight into Dr. Marc A. Marti-Renom Visit Period: 13 - 18 December 2009
Also, recently a promising anti-fungal agent has been identified. the structure, dynamics and energetics of the coupling subunits in Head of the Structural Genomics Unit
The problem of resistance requires the urgent development of new the biological motor proteins. Bioinformatics & Genomics Department Prof. Joost Schymkowitz
antibiotics to prevent it from assuming epidemic proportions, and Prince Felipe Research Center Group Leader
the teams of Prof. Beuerman, Dr. Verma and associates at Nanyang Valencia, Spain Flanders Institute for Biotechnology (VIB)
Technological University have formed a synergistic collaboration for Visit Period: 12 - 17 July 2009 Free University of Brussels
this purpose. Belgium
Prof. Philippe Derreumaux Visit Period: 13 - 18 December 2009
Director
UPR9080 CNRS, IBPC at CNRS Dr. Remo Rohs
Professor at University Paris Diderot - Paris 7 Associate Research Scientist
Paris, France Columbia University
Dr. Lim Yoon Pin Visit Period: 22 July 2009 New York, USA
Dr. Birgit Eisenhaber Senior Scientist, Visit Period: 21 December 2009
Research Scientist, Cancer Science Institute of Singapore Dr. M. Michael Gromiha
Mass Spectrometry Group, Assistant Professor, Senior Research Scientist Dr. Vasily V. Kuvichkin
Experimental Therapeutics Centre, Department of Biological Sciences, Computational Biology Research Center Senior Staff Scientist
A*STAR National University of Singapore National Institute of Advanced Industrial Science Laboratory of Mechanisms of Reception
and Technology (AIST) Institute of Cell Biophysics of the Russian Academy
With a strong background in protein sequence analysis and function Dr. Lim Yoon Pin’s laboratory is interested in the discovery of 1) Tokyo, Japan of Sciences
prediction, Dr. Birgit Eisenhaber, currently affiliated with the novel oncogenes in breast cancer; 2) novel tyrosine kinase Visit Period: 4 - 5 October 2009 Moscow, Russia
Experimental Therapeutics Center, A*STAR (ETC), provides her substrates in oncogenic EGFR signaling and 3) biomarkers in gastric Visit Period: 15 February - 8 March 2010
expertise in collaboration projects within ETC and with other A*STAR cancer. He has served as an advisor for the gastric cancer Prof. Alexander Lyubartsev
units in biomolecular mechanism-focused research. On the one knowledgebase created by BII. In collaboration with BII, an online Professor
hand, the link with BII allows her to leverage on the bioinformatics interactive biological interaction network (BIN) of EGFR signaling Division of Physical Chemistry
infrastructure, especially the usage of the ANNOTATOR suite in the has also been generated and this is hosted within BII’s webpage. Stockholm University, Sweden
research; on the other hand, BII benefits from methodical The BIN, which is an important resource for researchers in the field Visit Period: 22 October 2009
developments and from supervision of interns and new incoming of EGFR research, is constantly being updated as new data are
staff. being produced in Dr. Lim’s laboratory.
RECREATION CLUB
The Bioinformatics Institute Recreation Club (BII Rec Club) is a Christmas Celebration with APSN Centre for Adults
voluntary group consisting of staff from various divisions, who come
Not forgetting our part in giving back to our community, we visited
together to organize activities that will foster cohesiveness and fun
the Association for Persons with Special Needs (APSN) Centre for
in working in our institute. We organize team bonding and social
Adults. This is a voluntary welfare organization that caters to people
events for staff to interact with one another, building greater rapport
with mild intellectual disability. The centre provides skills training
in our workplace. Besides this, we are aware that our work community
to people who are intellectually challenged (IQ 50-70), so that their
consists of people from different nationalities, thus we seek to achieve
students would be able to live an independent and fulfilling life in
an appreciation and understanding of various cultures by creating a
the society. Members of BII brought cheers to the students in
“Festivals of the World” link on our intranet, to allow staff and students
celebrating Christmas with them in games, songs and gifts.
to share with us the festivals celebrated in their country.
Highlights of Events:
Chek Jawa, Pulau Ubin
A trip to the last kampong (village) of Singapore! It was a great (Left to Right) Noraini SULAIMAN, Christine LOW, Betty KEE, FONG Chew Peng Photo by Vivek Tanavde, BII
getaway from the hustle and bustle of the main island of Singapore
to lush nature, fresh air, and tranquility. We took a tour to Chek
Jawa, where the several ecosystems, plants and animals, which are
33
fast disappearing for other parts of the world, can be seen. Besides
doing a nature walk, we played group games, which in all fostered
interaction and team bonding among staff of BII. We also organized ADMINISTRATIVE
TEAM
a photography contest on the trip, where we savored on the happenings
during the trip. Photo taking enthusiasts shared their great works
on our online Best Photo and Best Caption voting contest, which
every staff of BII was involved.
The Administrative Team supports the institute’s leadership to create conditions for scientific work at BII. It also serves as a link to the
BMSI Business Centre (BBC), the centralized administrative body of A*STAR’s biomedical science institutes. Within this setting, the
Administrative Team facilitates all auxiliary services rendered such as administration, procurement, finance and human resource management,
Creative Artwork by Talented Members of APSN to BII scientists so that the latter can concentrate on their areas of expertise in their research work.
BII LOCATION
love your bike, you push it”
ddress
A
Bioinformatics Institute
30 Biopolis Street
#07-01, Matrix
Singapore 138671
By Car
Group photo - “Say Cheese” For visitors who drive, please park your vehicle at B3 (basement 3)
Handicrafts for Sale and follow the signage “To Matrix Lift Lobby” to locate lift D. You
BII Movie Screening – Kungfu Panda may take lift D to level 1 and approach the receptionist for the visitor’s
pass.
We brought home movie screening to the workplace, top with great snack
and most importantly wonderful working partners. It was simply a time
Future Plans
By Bus
of relaxation as we enjoy a good laugh over an entertaining movie. The BII Rec club seeks to make working in BII a fun place to be. We hope The following are the Singapore Bus Service Numbers that stop along
that the regular activities that we organize provide an avenue for members North Buona Vista Road:
of BII to mingle with one another, strengthening working relationship, and 74, 91, 92, 95, 191, 196, 198, 200
fostering deeper friendship.
By MRT
Board the East-West line heading towards Boon Lay and alight at
Committee Members 2009/2010
Buona Vista MRT Station. After alighting, you may take the one-north
The BII Rec Club is led by Chairlady, Betty Tan and the committee comprises free shuttle bus service to Biopolis, which operate from 7.30 am to
of Janos Kriston-Vizi, Kavitha Bharatnam, Fala Atkha, Aliaksandr Yarmishyn, 7.30 pm every Monday to Friday and 7:30 am to 1:30 pm on Map courtesy of JTC Corporation
Mohamed Hanifa, Zack Toh, Piroon Jenjaroenpun, Lua Wai Heng and Saturday.
Vachiranee Limvipavadh.
Image Source for Back Cover Design: Computer Model of MDM2 Interacting with Inhibitors by Chandra Verma and Team
32 | RECREATION CLUB