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Research Article
X-Ray Diffraction and Vibrational Spectroscopic
Characteristics of Hydroxylclinohumite from Ruby-Bearing
Marbles (Luc Yen District, Vietnam)
V. Hurai,1 M. Wierzbicka-Wieczorek,2 M. Pentrk,3 M. Huraiov,4 R. Thomas,5
A. Swierczewska,6 and J. Luptkov7
1
Geological Institute, Slovak Academy of Sciences, Dubravska cesta 9, 840 05 Bratislava, Slovakia
Mineralogy Department, Institute for Geosciences, Friedrich-Schiller University, 077 45 Jena, Germany
3
Institute of Inorganic Chemistry, Slovak Academy of Sciences, 840 05 Bratislava, Slovakia
4
Department of Mineralogy and Petrology, Comenius University, 842 15 Bratislava, Slovakia
5
Helmholtz Center Geoforschungs Zentrum, 144 73 Potsdam, Germany
6
AGH University of Science and Technology, Faculty of Geology, Geophysics and Environment Protection, 30-059 Krakow, Poland
7
Geological Institute, Slovak Academy of Sciences, 974 01 Banska Bystrica, Slovakia
2
1. Introduction
Humite-group minerals have the general formula n(M 2 SiO4 )
M 1x Tix (OH,F)22x O2x , where stands for Mg, Fe, Mn,
Ca, Zn in decreasing order of abundance, < 0.5 and
numbers from 1 to 4 define norbergite, chondrodite, humite
and clinohumite, respectively [1]. The humite-group minerals
have attracted attention owing to the suspicion of being
volatile carriers in subduction zones and the overlying mantle
wedge. This hypothesis was strengthened by occurrences of
chondrodite and clinohumite in eclogite, garnet peridotite
[25], and kimberlite [6], as well as by the experimentally
Prg
An
Chu
An
1 cm
(a)
1 mm
(b)
Figure 1: (a) Honey-yellow crystals of hydroxylclinohumite (Chu) associated with grey anorthite (An) and green pargasite (Prg) in white
calcite matrix. (b) Aggregate of hydroxylclinohumite crystals isolated after dissolution of calcite matrix in hydrochloric acid.
3
Table 1: Average composition and chemical formula of hydroxylclinohumite from Vietnam.
Oxide
SiO2
TiO2
MgO
FeO
F
O=F
H2 O
Total
wt.%
38.5(1)
0.52(3)
57.6(2)
0.48(2)
2.89(8)
1.22(3)
1.52(3)
100.3(3)
Ion
Si4+
Ti4+
Mg2+
Fe2+
F
Average a.p.f.u.
3.997
0.041
8.911
0.042
0.948
OH
1.052
3. Results
3.1. Chemical Composition. EPMA analyses recalculated
on basis of 13 cations and 18 oxygen atoms (Table 1)
document nearly complete occupancy of tetrahedral site
with Si (3.9964.000 a.p.f.u). The surplus titanium (0.038
0.039 a.p.f.u.) over the negligible tetrahedrally coordinated Ti
(max. 0.004 a.p.f.u.) together with the Mg-excess over tetrahedrally coordinated Mg (0.9070.917 a.p.f.u.), plus minor
amounts of Fe (0.0400.043 a.p.f.u.) and Mn (0.002 a.p.f.u.)
sum to 1 atom per formula unit (a.p.f.u.) in the octahedrally
coordinated M-site, thus resulting in the nearly ideal chemical formula 4[Mg2 SiO4 ][(Mg,Fe,Ti)(OH,F)2 ] with = 4
that is diagnostic of clinohumite. Predominance of OH(O)
over F points to hydroxylclinohumite; however, the exact
F/OH ratio remains uncertain due to the unknown content
of oxygen anions, which may reach up to 0.08 a.p.f.u.,
assuming their bonding with octahedrally coordinated Ti [1],
and also due to the matrix effect on the F concentrations
analysed in the silicate mineral using the LiF standard [35].
3.2. Crystal Structure. The hydroxylclinohumite crystal studied exhibited good quality, with no evidence of twinning
or other unusual features. The final structural refinement
yielded R1(F) = 1.98% for 1354 observed reflections and 150
parameters (Table 2). The highest residual electron-density
3 at a distance of
peak in clinohumite corresponds to 0.39 e/A
from the O1,1 site. The deepest hole in the difference
0.81 A
from the Si1 site. The
3 at a distance of 0.68 A
map is 0.28 e/A
final displacement parameters are given in Table 3, whereas
Table 4 contains anisotropic displacement parameters for
all non-H atoms. Finally, selected bond lengths and results
of bond-valence calculations (bond-valence sums, BVS, in
valence units, v.u.) are summarized in Table 5.
The crystal structure of the studied clinohumite consists
of isolated SiO4 tetrahedra and octahedrally coordinated
( ) at 153 K
3)
(A
(000), calc (g/cm3 )
(mm1 )
Crystal dimension (mm)
Data Collection
Diffractometer
(K)
(Mo) (A),
Crystal-detector dist. (mm)
Collection mode, 2max ( )
Rotation axis, width ( )
Total no. of frames
Collect. time per degree (s)
, , ranges
Total reflections measured
Unique reflections
Refinement
Refinement method
Weighting coefficients ,
No. of refined parameters
1(), 2(2 )all
Observed refls.
Extinction coefficient
GooF
3)
min , max (/A
1/2
{[(2 2 ) ]/[(2 ) ]} .
unit cell parameters at 25 C are as follows: = 4.7479(9), = 10.2387(20),
= 13.6480(27), and = 100.89(3) .
1/2
Table 3: Fractional atomic coordinates and equivalent isotropic atomic displacement parameters for (Mg8.95 Ti0.05 )(SiO4 )4 F1.03 OH0.97
hydroxylclinohumite.
0.5
0.49754(8)
0.00935(9)
0.50902(9)
0.49278(9)
0.07336(7)
0.07655(7)
0.73316(19)
0.27828(19)
0.22309(19)
0.22211(19)
0.23638(19)
0.77894(19)
0.72441(19)
0.72798(19)
0.26229(19)
0.090(10)
Atom
Mg1C
Mg1N
Mg25
Mg26
Mg3
Si1
Si2
O1,1
O1,2
O1,3
O1,4
O2,1
O2,2
O2,3
O2,4
F
H
0.0
0.94627(4)
0.14027(4)
0.25031(4)
0.87792(5)
0.06623(3)
0.17671(3)
0.06463(9)
0.41986(9)
0.11231(9)
0.15865(9)
0.32266(9)
0.96858(9)
0.27995(9)
0.22672(9)
0.04631(8)
0.020(5)
equiv
0.00564(15)
0.00572(13)
0.00623(13)
0.00543(13)
0.00673(16)
0.00437(12)
0.00443(12)
0.0061(2)
0.00578(19)
0.0067(2)
0.0067(2)
0.0061(2)
0.0063(2)
0.0066(2)
0.0065(2)
0.0093(2)
0.050
0.5
0.27411(3)
0.17013(3)
0.38821(3)
0.04300(3)
0.38929(3)
0.83517(3)
0.38804(6)
0.38785(6)
0.29332(7)
0.48625(7)
0.16264(6)
0.16240(7)
0.26242(7)
0.07007(7)
0.05580(6)
0.013(4)
Table 4: Anisotropic atomic displacement parameters for (Mg8.95 Ti0.05 )(SiO4 )4 F1.03 OH0.97 hydroxylclinohumite.
Atom
Mg1C
Mg1N
Mg25
Mg26
Mg3
Si1
Si2
O1,1
O1,2
O1,3
O1,4
O2,1
O2,2
O2,3
O2,4
F
11
0.0051(3)
0.0051(2)
0.0064(2)
0.0061(2)
0.0069(3)
0.00355(19)
0.00379(19)
0.0048(4)
0.0059(4)
0.0056(4)
0.0057(4)
0.0047(4)
0.0061(4)
0.0059(4)
0.0061(4)
0.0102(4)
22
0.0070(3)
0.0065(3)
0.0058(2)
0.0047(2)
0.0075(3)
0.00490(19)
0.00483(19)
0.0068(4)
0.0057(4)
0.0082(4)
0.0069(4)
0.0071(4)
0.0058(4)
0.0080(4)
0.0072(4)
0.0078(4)
33
0.0048(3)
0.0048(2)
0.0064(2)
0.0052(2)
0.0052(2)
0.00443(19)
0.00448(19)
0.0063(4)
0.0056(4)
0.0063(4)
0.0068(4)
0.0063(4)
0.0066(4)
0.0063(4)
0.0055(4)
0.0098(4)
23
0.0012(2)
0.00077(19)
0.00124(18)
0.00007(18)
0.00009(17)
0.00031(13)
0.00038(14)
0.0004(3)
0.0008(3)
0.0015(3)
0.0004(3)
0.0008(3)
0.0004(3)
0.0024(3)
0.0003(3)
0.0013(3)
13
0.0007(2)
0.00052(16)
0.00029(16)
0.00007(16)
0.00055(16)
0.00003(12)
0.00002(12)
0.0001(3)
0.0004(3)
0.0003(3)
0.0009(3)
0.0001(3)
0.0002(3)
0.0000(3)
0.0006(3)
0.0025(3)
12
0.0001(2)
0.00049(16)
0.00011(15)
0.00020(15)
0.00045(16)
0.00004(12)
0.00009(12)
0.0001(3)
0.0001(3)
0.0002(3)
0.0003(3)
0.0001(3)
0.0005(3)
0.0004(3)
0.0002(3)
0.0009(3)
in both SiO4
The average SiO bond length is 1.633 A
tetrahedra. The hydrogen site is associated with the ninth
oxygen atom (labeled O/F here) and occupies about half
(47.7%) of the general position. The OH and H H bond
and 1.018 A
respectively.
distances correspond to 0.99(4) A,
Calculated BVS for the Mg and Si sites are close to
expected values: 2.02 (Mg1C )/1.99, (Mg1N )/1.91, (Mg25 )/1.88,
(Mg26 )/2.08 (Mg3), and 3.90 (Si1)/3.91 (Si2). As expected
from the small Ti content in the Mg3 site, this site shows the
highest calculated BVS (2.08 v.u.) among all five Mg sites. The
relatively low BVS for Mg25 and Mg26 are explained in terms
of long MgO distances of the distorted octahedra. The BVS
values for O bonds from O1,1 to O2,4 are consistent with those
reported by Ferraris et al. [37]. The O/F anion with a BVS
of 1.10 is underbonded, which results from the 55% F-for-O
substitution.
and calculated
Table 5: Selected geometric parameters (A)
bond-valence sums (BVS) for the coordination polyhedra in
(Mg8.95 Ti0.05 )(SiO4 )4 F1.03 OH0.97 hydroxylclinohumite.
Atom1Atom2
BVS
0.36
Mg1C O1,2
2.0694(10)
Mg1C O1,2
2.0694(10)
0.36
Mg1C O1,1
2.0908(10)
0.34
Mg1C O1,1
2.0908(10)
0.34
Mg1C O1,4
2.1258(10)
0.31
Mg1C O1,4
2.1258(10)
0.31
2.095
2.02
Mg1N O2,2
2.0700(10)
0.36
Mg1N O1,2
2.0853(10)
0.35
Mg1N O2,1
2.1023(11)
0.33
Mean
Mg1N O1,1
2.1032(11)
0.33
Mg1N O1,3
2.1165(10)
0.32
Mg1N O2,3
2.1345(10)
0.30
2.102
1.99
Mg25 O1,3
2.0284(11)
0.40
0.38
Mean
Mg25 O2,2
2.0543(10)
Mg25 O/F
2.0572(11)
0.35
Mg25 O2,1
2.1731(10)
0.27
Mg25 O2,3
2.1855(11)
0.26
Mg25 O2,4
2.2087(11)
0.25
2.12
1.91
Mg26 O1,2
2.0514(10)
0.38
Mg26 O1,4
2.0549(11)
0.38
Mg26 O2,3
2.0677(11)
0.36
Mg26 O1,1
2.1763(11)
0.27
Mg26 O1,3
2.1954(11)
0.26
Mg26 O1,4
2.2337(11)
0.23
2.130
1.88
Mg3/Ti3O2,4
2.0002(11)
0.44
Mg3/Ti3O/F
2.0197(10)
0.38
Mean
Mean
2.0393(10)
0.37
Mg3/Ti3O2,4
2.1204(11)
0.31
Mg3/Ti3O2,1
2.1239(11)
0.31
Mg3/Ti3O2,2
2.1879(11)
0.26
2.082
2.07
Mg3/Ti3O/F
Mean
Si1O1,1
1.6127(10)
1.03
Si1O1,2
1.6512(10)
0.93
Si1O1,3
1.6347(10)
0.97
Si1O1,4
1.6344(10)
0.97
1.633
3.90
Mean
Si2O2,1
1.6127(10)
1.03
Si2O2,2
1.6426(10)
0.95
Si2O2,3
1.6380(10)
0.96
Si2O2,4
1.6381(10)
0.96
1.633
3.90
Mean
Table 5: Continued.
BVS are calculated according to the refined occupancy for oxygen [58] and
fluorine atoms ([59]; updated values from http://www.ccp14.ac.uk/ccp/webmirrors/i d brown/).
845 861
2200
3578
2000
1600
1400
1200
1000
3410
876
931
968
Intensity (cnts)
1800
3393
800
600
912
400
200
2600
100 200 300 400 500 600 700 800 900 1000 1100
Raman shift (cm1 )
2800
3000
3200
3400
3600
3800
4000
Chum2
Chum2-90
3560
2400
3570
832
756
786
609
549
590
186
212
233
306
321
348
9000
8500
8000
7500
7000
6500
6000
5500
5000
4500
4000
3500
3000
2500
2000
1500
1000
500
110
Intensity (cnts)
Chum2
Chum2-90
(a)
(b)
4000
910
11283
11472
Absorbance (103 )
5074
4438
4514
912
6940
6960
4328
914
4184
4238
970
965
960
955
950
945
940
935
930
925
920
915
910
905
900
4097
Absorbance (103 )
Figure 3: Baseline-corrected raw Raman spectra of hydroxylclinohumite from Vietnam illustrating strong polarization effect on the bands
intensity.
908
906
904
902
900
6000
6000
(a)
7000
8000
9000
10000
Wavenumber (cm1 )
11000
12000
(b)
hydroxyl bands are typical of all natural humite-group minerals except for norbergite and also for hydrated olivine [14,
17, 42]. Band component analysis showed two overlapping
bands centred at 3392 and 3412 cm1 for the low-frequency
region, as well as three sharp maxima at 3560, 3570, and
3579 cm1 in the high-frequency bands. All of these bands are
also infrared-active. No Raman-active modes were observed
between 4000 and 5000 cm1 .
In spite of relatively high 2 correlation factors (0.992
0.997) achieved for the whole segment of the Raman spectrum at 33003700 cm1 , the peak fitting leaves a relatively
high number of spots outside the 2 or even 3 probability
levels. Particularly the 3560 and 3570 cm1 bands are obviously skewed to their right sides. Component analysis reveals
that these bands are in fact doublets. The band at 3560 cm1
consists of two components centred at 3559 and 3562 cm1 ,
while that at 3570 cm1 consists of two modes centred at 3569
0.7
3528
0.3
3692
3300
3400
3500
3600
3700
Wavenumbers (cm )
25 C
Absorbance
0.5
3393
3415
Absorbance
0.9
100 C
200 C
300 C
400 C
500 C
4. Discussion
The inferred unit cell parameters and the refined crystal
structure for the Vietnamese hydroxylclinohumite are comparable to those of holotype specimen [37, 50], synthetic [51]
and other natural clinohumites [34, 36, 39]. The Mg2+ cation
is substituted by Ti4+ , Fe2+ , and minor Mn2+ as is usual for
600 C
700 C
Group II
3300
3350
3400
Group I
3450
3500
3550
3600
800 C
3650
Wavenumbers (cm1 )
Figure 6: Thermal effect on the OH-stretching region in hydroxylclinohumite powder recorded by FTIR.
to strong H-bonds. In contrast, weak H-bonds are characteristically above 3200 cm1 with O . O bond lengths of
Hence, our Raman and FTIR investigations clearly
2.70 A.
classify the H-bonds in the Vietnamese hydroxylclinohumite
as weak. This is, however, controversial with the reversible,
temperature-induced shift of two OH-stretching vibration
regions on heating (Figure 6), which in turn indicates OHgroups engaged in strong H-bonding [54].
The two groups of OH-stretching vibration bands at
33903420 and 35603580 cm1 in the Vietnamese hydroxylclinohumite show similarities with the low- and highfrequency bands in hydrated olivinethe most important
water carrier in the mantle, for example, [18, 20]. The absorption bands at 3395 and 3410 cm1 in natural clinohumites
and chondrodites have been assigned to molecular liquidlike water, silanol groups [14], or hydrogen bonding between
OH groups attached to Mg in M-site [42]. Adopting the
observations of the last authors, the absence of the 3345 cm1
band in Vietnam clinohumite indicates no hydrogen bonding
between OH-groups attached to Si in the M-site. The strong
polarisation effect on the low-energy bands and the reversible
band shifting at various temperatures rule out randomly
distributed aqueous liquid inclusions [17].
The absence of 3400 cm1 bands in the Raman spectra
of chemically pure synthetic hydroxylclinohumite [23, 45]
suggests that the observed low-frequency band group in the
Vietnamese hydroxylclinohumite is associated with impurities, for example, Ti, Fe, F, or undetected Bcommon minor
element in natural humite-group minerals [35]. Considering
nearly ideal chemical formula of the Vietnamese clinohumite,
the substantial boron content can be excluded. Similarly, the
effect of Fe3+ point defects (protons coupled with trivalent
ions) as observed in strongly oxidised Fo90 olivines [18]
cannot account for the low-frequency group II bands due to
low total iron content. This conclusion is in agreement with
the absence of the group II bands in synthetic Fe-bearing
OH-clinohumite [45]. In addition, the effect of fluorine can
be also ruled out because the 3390, 3400 and 3415 cm1
bands occur in both F-rich and F-absent Ti-clinohumites
[55]. The low-frequency group II bands can be also attributed
to water incorporated in OH-planar defects, as described in
natural titanian clinohumites and the olivines containing Ticlinohumite lamellae [18, 56]. The observed shift of the lowfrequency group II bands to higher frequencies on heating
would indicate OH-groups engaged in strong H-bonding,
because thermal expansion leads to increasing OHO distance, weakening the H bonds and shifting the corresponding
band positions to higher frequencies [54]. In contrast, the
shift of the high-frequency group I bands to lower frequencies
in the heated hydroxylclinohumite is reminiscent of that
observed in hydrated olivines. The effect was explained by the
increasing anharmonicity of the OH-bonds involved in the
vacancies on the Mg2+ site [20].
5. Conclusions
[8] R. Stalder and P. Ulmer, Phase relations of a serpentine composition between 5 and 14 GPa: significance of clinohumite and
phase E as water carriers into the transition zone, Contributions
to Mineralogy and Petrology, vol. 140, no. 6, pp. 670679, 2001.
Conflict of Interests
The authors declare that there is no conflict of interests
regarding the publication of this paper.
Acknowledgments
The authors are grateful to Helmar Gorls for help with
single-crystal data collection, to Gerald Giester and Uwe
Kolitsch for helpful comments, and to N. Q. Cuong for
geological location of the samples. Establishment of Raman
and X-ray Laboratories was supported by the European
Regional Development Fund under project of the Centre of
Excellence for Integrated Research of the Earths Geosphere
(ITMS-26220120064). Establishment of FTIR Laboratory was
supported by the APVV project Solipha (0033/07). The paper
benefited from critical reviews of five anonymous reviewers.
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11
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Volume 2014
Volume 2014
Journal of
Computational
Environmental Sciences
Volume 2014
Volume 2014