Table 1: Mycobacterium tuberculosis H37Rv genes induced after a shift from 20% to 0.2% oxygen.

The following microarray data are for individual interpretation. All genes in this table
may not be reproducibly induced. In addition, the table should not be seen as a complete list of all possibly induced genes. Description of the data table details and analysis methods are described
in the data analysis section.
Corrected intensity
Average
Spot

Name

4042Rv0009
2987Rv0046c
3709Rv0047c
317Rv0053
103Rv0054
2016Rv0061
2740Rv0066c
5628Rv0077c
1039Rv0079
5629Rv0079
4908Rv0080
5630Rv0081
4909Rv0082
5631Rv0083
3176Rv0084
477Rv0088
4364Rv0188
4933Rv0196
5655Rv0197
2335Rv0211
3852Rv0241c
3131Rv0242c
3853Rv0243
3132Rv0244c
248Rv0252
172Rv0271c
252Rv0275c
4848Rv0296c
1971Rv0330c
126Rv0339c
5123Rv0350
4402Rv0351

Gene

ppiA
rpsF
ssb
icd2
hycD
pckA
fabG4
fadA2
fadE5
nirB
fadE6
fadD27
atsG
dnaK
grpE

Average
Corrected ratios

CH1

CH2

CH2/CH1

Cye3

Cye5

Induced

421
255
151
94
124
301
123
37
23
64
36
33
43
47
36
49
106
84
176
103
288
88
171
34
30
28
159
161
42
51
173
116

688
301
221
162
216
456
184
62
292
359
307
137
94
85
45
72
186
150
354
184
466
167
289
54
50
63
286
275
79
77
928
460

1.5
1.8
2.3
1.6
1.5
1.5
1.6
1.6
13.0
5.4
8.2
3.8
2.1
1.8
1.5
1.6
1.7
1.9
2.1
1.9
1.7
1.8
1.6
1.6
1.5
2.6
1.7
1.6
2.1
1.5
3.6
2.6

StD SEM

Gene product

PCR
F

0.4
1.4
2.1
0.5
0.4
0.2
0.5
0.4
3.7
1.7
2.0
1.2
0.5
0.4
0.4
0.9
0.5
0.4
0.7
0.2
0.2
0.4
0.4
0.3
0.5
1.0
0.1
0.3
0.6
0.2
3.1
2.2

0.1
0.6
0.9
0.2
0.2
0.1
0.2
0.2
1.5
0.7
0.8
0.5
0.2
0.1
0.2
0.4
0.2
0.2
0.3
0.1
0.1
0.1
0.2
0.1
0.2
0.4
0.1
0.1
0.3
0.1
1.3
0.9

peptidyl-prolyl_cis-trans_isomerase

30S_ribosomal_protein_S7
single_strand_binding_protein
unlikely_orf
isocitrate_dehydrogenase
probable__oxidoreductase

transcriptional_regulator_(ArsR_family)
probable_oxidoreductase_subunit
probable_oxidoreductase_subunit
formate_hydrogenlyase_subunit_4
putative_methyltransferase
transcriptional_regulator_(TetR/AcrR_family)
phosphoenolpyruvate_carboxykinase_
3-oxoacyl-[ACP]_reductase
acetyl-CoA_C-acetyltransferase_
acyl-CoA_dehydrogenase_
nitrite_reductase_flavoprotein
acyl-CoA_dehydrogenase_
acyl-CoA_synthase
proable_arylsulfatase

70_kD_heat_shock_protein,_chromosome_replication
stimulates_DnaK_ATPase_activity

1.1
1.1
1.1
1.1
1.1
1.2
1.1
1.1
1.1
1.2
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1

Individual array ratios (CH2/CH1)

Biol. Set 1
Biol. Set 2
mL211

1.2
1.0
1.0
1.0
1.1
1.2
2.1
1.5
17.9
4.5
7.1
3.2
1.9
2.1
1.8
2.5
2.4
1.7
3.1
2.2
1.9
1.5
1.1
1.5
1.2
4.4
1.6
1.3
3.0
1.4
2.2
1.1

mL212 mL204

1.2
1.1
1.0
0.9
1.1
1.1
2.3
1.4
7.0
3.7
6.0
2.4
2.3
1.4
1.9
2.4
2.3
1.6
2.6
2.0
1.7
1.4
1.1
1.5
0.9
3.3
1.6
1.2
2.5
1.4
1.9
1.1

1.9
0.9
1.0
1.9
2.1
1.6
1.5
1.9
13.8
6.5
8.8
5.7
2.7
2.1
1.1
1.7
1.8
1.7
1.4
1.8
1.6
2.0
1.8
1.4
1.9
1.8
1.9
1.8
1.7
1.5
8.3
4.9

mL215

1.9
0.9
0.8
2.0
2.0
1.5
1.5
2.2
15.1
4.1
7.6
4.7
2.4
2.1
1.7
1.9
1.5
1.5
1.3
1.7
1.4
1.7
1.5
1.3
2.4
1.9
1.9
1.7
1.5
1.6
6.7
5.7

Biol. Set 3
mL213 mL216

1.2
3.6
5.7
1.7
1.3
1.6
1.1
1.4
12.7
5.5
11.9
3.0
2.0
1.7
1.2
0.5
1.2
2.7
2.2
1.7
1.8
2.3
1.9
2.2
1.5
2.4
1.8
2.0
nd
2.0
1.3
1.2

1.4
3.6
4.1
1.8
1.4
1.7
1.2
1.2
11.4
8.1
8.1
3.7
1.3
1.4
1.1
0.6
1.2
1.9
1.9
1.8
1.7
1.9
2.0
2.0
1.4
2.0
1.7
1.6
2.0
1.3
1.2
1.3

5124Rv0352
258Rv0368c
3141Rv0370c
3865Rv0375c
260Rv0384c
261Rv0386
3209Rv0410c
3730Rv0410c
458Rv0411c
1180Rv0412c
264Rv0440
1324Rv0455c
1879Rv0497
1883Rv0505c
325Rv0509
5343Rv0524
4622Rv0525
327Rv0559c
1331Rv0569
1049Rv0569
610Rv0570
1332Rv0571c
328Rv0572c
611Rv0572c
612Rv0574c
4276Rv0634c
2929Rv0644c
333Rv0651
334Rv0663
2209Rv0670
3501Rv0676c
4223Rv0677c
614Rv0678
616Rv0682
283Rv0700
5499Rv0714
1890Rv0715
3510Rv0796
4233Rv0810c
1685Rv0815c

dnaJ
clpB
pknG
pknG
glnH
groEL2
serB
hemA
hemL
nrdZ
mmaA2
rplJ
atsD
end
mmpL5
mmpS5
rpsL
rpsJ
rplN
rplX
IS6110
cysA2

159
27
28
28
61
30
54
59
278
200
192
187
72
155
182
80
69
93
38
19
21
24
29
18
18
224
283
114
48
65
130
221
124
354
259
339
128
138
168
233

280
36
37
41
104
40
94
91
507
347
701
300
116
228
270
102
82
154
563
356
58
46
180
91
45
414
421
158
48
103
303
511
321
602
442
590
262
205
282
420

1.5
1.5
1.5
1.5
1.6
1.5
2.0
1.7
2.2
2.0
3.0
1.5
1.5
1.5
1.5
1.5
1.5
1.5
19.3
17.1
3.0
2.1
11.1
5.0
2.9
1.7
1.5
1.5
1.5
1.6
2.2
2.0
2.0
1.6
1.5
1.5
1.7
1.5
1.6
1.6

0.4
0.4
0.6
0.4
0.4
0.4
0.8
0.7
0.8
0.5
3.5
0.4
0.4
0.2
0.3
0.5
0.5
0.4
11.2
3.2
0.9
0.4
4.4
1.4
0.9
0.6
0.3
0.4
0.2
0.2
0.4
0.7
0.9
0.4
0.4
0.3
0.5
0.1
0.4
0.4

0.2
0.2
0.2
0.2
0.2
0.2
0.3
0.3
0.3
0.2
1.4
0.2
0.2
0.1
0.1
0.2
0.2
0.2
4.6
1.3
0.4
0.2
2.0
0.6
0.4
0.2
0.1
0.2
0.1
0.1
0.2
0.3
0.4
0.2
0.2
0.1
0.2
0.0
0.2
0.2

acts_with_GrpE_to_stimulate_DnaK_ATPase
putative_CO_dehydrogenase_gene_cluster
putative_CO_dehydrogenase_gene_cluster
heat_shock_protein
transcriptional_regulator_(LuxR/UhpA_family)
serine-threonine_protein_kinase
serine-threonine_protein_kinase
putative_glutamine_binding_protein
unknown_probable_membrane_protein
60_kD_chaperonin_2
N-term_hydrophobic_stretch
probable_membrane_protein
probable_phosphoserine_phosphatase
glutamyl-tRNA_reductase
glutamate-1-semialdehyde_aminotransferase
possible_exported

ribonucleotide_reductase,_class_II

putative_glyoxylase_II
methoxymycolic_acid_synthase_2
50S_ribosomal_protein_L10
proable_arylsulfatase
endonuclease_IV_(apurinase)
conserved_large_membrane_protein
conserved_small_membrane_protein
30S_ribosomal_protein_S12
30S_ribosomal_protein_S10
50S_ribosomal_protein_L14
50S_ribosomal_protein_L24

thiosulfate_sulfurtransferase

1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
2.6
1.1
1.1
2.5
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1

1.1
2.1
2.7
2.2
1.3
1.6
1.4
1.3
1.9
2.0
0.8
1.1
1.0
1.6
1.4
2.2
2.1
2.2
42.0
15.5
3.2
nd
3.2
6.6
2.9
0.9
1.2
nd
nd
1.8
2.5
1.6
2.0
1.2
1.0
1.2
1.4
1.5
1.5
1.5

1.1
1.2
1.1
1.7
1.2
1.3
1.4
1.2
2.0
1.7
0.7
1.0
1.2
1.4
1.2
1.6
1.7
1.5
14.5
14.7
3.1
2.0
13.1
4.2
2.5
0.9
1.3
1.0
1.2
1.7
2.1
1.6
1.8
1.1
0.9
1.1
1.4
1.5
1.5
1.4

2.1
1.1
1.1
1.6
2.0
1.1
1.6
1.4
1.6
1.5
7.5
1.8
1.7
1.4
1.5
1.1
1.0
nd
13.6
23.3
2.3
1.8
nd
5.8
1.8
2.1
1.5
1.5
1.6
1.6
2.8
3.1
3.4
1.8
1.9
2.0
2.5
1.5
2.0
2.0

1.7
1.7
1.5
1.6
2.1
1.2
1.4
1.2
1.5
1.6
7.6
2.0
1.5
1.3
1.4
0.8
0.9
1.4
15.3
15.5
2.3
2.0
12.9
6.4
2.3
2.1
1.5
1.4
1.8
1.6
2.3
2.7
2.7
1.7
1.8
1.8
2.0
1.3
2.1
2.0

1.5
1.2
1.2
1.2
1.6
2.1
3.3
2.7
3.2
2.7
0.7
1.4
2.1
1.9
1.8
1.6
1.5
1.1
15.0
16.8
4.6
2.7
13.3
3.8
4.4
1.8
1.8
1.9
1.6
1.5
1.8
1.3
1.2
2.0
1.8
1.4
1.3
1.6
1.0
1.2

1.4
nd
1.3
0.8
1.3
1.7
2.7
2.6
3.2
2.7
0.8
1.6
nd
1.7
1.9
1.6
1.5
1.2
15.5
16.5
2.7
1.9
13.1
3.5
3.6
2.2
1.9
1.8
1.3
1.3
1.6
1.6
1.2
2.1
1.8
1.5
1.6
1.4
1.2
1.3

1687Rv0819
1689Rv0823c
2411Rv0824c
682Rv0826
4573Rv0827c
1695Rv0848
5306Rv0863
1697Rv0864
1701Rv0872c
3026Rv0875c
3748Rv0876c
144Rv0885
3570Rv0886
866Rv0887c
3031Rv0896
42Rv0905
4031Rv0940c
3309Rv0941c
1702Rv0973c
2424Rv0974c
1129Rv0991c
3293Rv0998
1470Rv1007c
2917Rv1013
4038Rv1013
3316Rv1014c
1155Rv1015c
1149Rv1039c
2387Rv1060
4549Rv1063c
2389Rv1076
1668Rv1077
4639Rv1078
4558Rv1094
4728Rv1152
1842Rv1156
2566Rv1161
3155Rv1162
565Rv1172c
3581Rv1174c

desA1
cysM3
moaC2
PE_PGRS
fprB
gltA2
echA6
accA2
accD2
metS
pks16
pks16
pth
rplY
PPE
lipU
cysM2
pra
desA2
narG
narH
PE
-

51
168
376
19
27
30
316
93
99
79
105
72
22
18
269
136
64
22
58
18
38
71
74
227
142
85
138
39
60
119
61
55
286
373
62
268
153
159
144
439

72
215
636
30
55
42
581
137
203
118
133
206
40
30
412
210
112
29
115
35
95
121
147
774
234
188
275
61
109
195
98
82
386
825
109
361
256
253
256
781

1.5
1.7
1.9
1.5
2.0
1.5
1.8
1.5
1.8
1.6
1.5
2.5
1.8
1.5
1.6
1.5
1.6
1.5
1.9
1.7
2.0
1.6
2.1
3.6
1.6
2.0
1.8
1.5
1.7
1.7
1.7
1.5
1.5
2.2
1.6
1.5
1.7
1.6
1.8
1.5

0.3
0.7
0.7
0.3
0.6
0.3
0.4
0.4
0.3
0.4
0.3
0.8
0.4
0.6
0.4
0.3
0.4
1.0
0.7
0.6
1.2
0.3
1.4
1.9
0.6
0.4
0.4
0.4
0.3
0.3
0.4
0.1
0.3
0.7
0.3
0.2
0.1
0.2
0.5
0.5

0.1
0.3
0.3
0.1
0.2
0.1
0.2
0.2
0.1
0.2
0.1
0.3
0.2
0.3
0.1
0.1
0.2
0.4
0.3
0.3
0.5
0.1
0.6
0.8
0.3
0.2
0.2
0.2
0.1
0.1
0.2
0.0
0.1
0.3
0.1
0.1
0.0
0.1
0.2
0.2

transcriptional_regulator_(NifR3/Smm1_family)
acyl-[ACP]_desaturase_
transcriptional_regulator_(ArsR_family)
putative_cysteine_synthase
molybdenum_cofactor_biosynthesis,_protein_C
possible_exported_protein
possible_membrane_protein
unknown_transmembrane_protein
ferredoxin,_ferredoxin-NADP_reductase
citrate_synthase_1_
enoyl-CoA_hydratase/isomerase_superfamily_(aka_eccH)
probable_monooxygenase
acetyl/propionyl-CoA_carboxylase,_a_subunit
acetyl/propionyl-CoA_carboxylase,_b_subunit

methionyl-tRNA_synthase
polyketide_synthase_
polyketide_synthase_
peptidyl-tRNA_hydrolase
50S_ribosomal_protein_L25

probable_esterase
cystathionine_b-synthase
acyl-[ACP]_desaturase
transcriptional_regulator_(GntR_family)
nitrate_reductase_a_subunit
nitrate_reductase_b_chain

1.1
1.1
1.1
1.1
1.1
1.1
1.2
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.2
1.1
1.1
1.1
1.1
1.1
1.1
1.1
2.5
1.1
1.1
1.1
2.5
1.1
1.1
1.1

1.9
2.7
2.8
1.3
2.2
1.6
2.3
2.0
2.2
1.4
1.7
1.7
1.2
nd
2.2
1.7
1.7
3.2
2.3
nd
1.1
1.3
4.9
1.7
1.0
1.7
1.3
nd
1.3
1.7
2.1
1.6
1.2
2.7
1.6
1.7
1.8
1.6
nd
1.1

1.5
2.4
2.4
1.6
2.0
1.5
2.3
1.7
1.5
1.7
1.6
1.7
nd
1.0
2.1
1.6
1.4
1.3
0.8
0.8
1.6
1.2
1.2
1.6
1.0
2.3
1.3
0.9
1.3
1.6
2.3
1.5
1.2
2.8
1.5
1.7
1.6
1.4
1.1
1.1

1.4
1.2
1.8
1.7
2.2
nd
2.0
nd
2.0
1.3
1.1
3.3
2.1
2.2
1.4
1.6
2.1
nd
2.0
2.4
3.7
2.0
1.4
3.3
1.7
2.4
2.2
1.8
2.0
1.5
1.4
1.4
1.3
2.5
2.1
1.2
1.6
1.7
1.9
2.3

1.3
1.1
1.9
2.0
3.0
2.0
1.7
1.5
1.6
1.2
1.1
3.4
1.9
2.0
1.4
1.7
2.0
1.5
2.1
1.6
3.4
1.7
1.2
3.1
1.2
1.9
2.3
1.8
1.9
1.4
1.5
1.5
1.3
2.5
1.6
1.2
1.5
1.4
1.6
1.8

1.4
1.3
1.1
1.5
1.6
1.3
1.2
1.1
2.1
2.0
1.8
2.5
1.9
1.3
1.3
1.1
1.3
0.9
2.8
2.1
1.2
1.8
2.1
5.6
2.5
2.2
1.7
1.2
1.9
2.1
1.8
1.7
1.7
1.2
1.5
1.4
1.8
1.6
2.2
1.3

1.2
1.3
1.2
1.1
1.3
1.3
1.5
1.2
1.6
2.2
1.5
2.5
nd
0.9
1.5
1.2
1.1
0.8
1.2
1.4
1.1
1.3
2.0
6.1
2.3
1.3
2.1
1.5
1.6
1.9
1.3
1.5
2.0
1.5
1.4
1.6
1.8
1.8
2.1
1.3

4171Rv1177
4371Rv1211
3526Rv1229c
3458Rv1245c
2681Rv1264
4818Rv1284
5540Rv1285
4819Rv1286
135Rv1369c
3022Rv1379
3744Rv1380
683Rv1381
3745Rv1382
5503Rv1390
2622Rv1404
684Rv1405c
4786Rv1411c
3521Rv1443c
2643Rv1493
1922Rv1494
2644Rv1495
4481Rv1540
1591Rv1556
1214Rv1576c
489Rv1584c
3374Rv1590
3373Rv1592c
4094Rv1593c
3372Rv1594
4093Rv1595
1208Rv1601
2572Rv1628c
3284Rv1683
3289Rv1705c
3290Rv1707
3276Rv1732c
3998Rv1733c
3277Rv1734c
3999Rv1735c
3278Rv1736c

fdxC
mrp
cysD
cysN
IS6110
pyrR
pyrB
pyrC
lprG
mutB
nadA
nadB
hisB
PPE
narX

296
97
87
53
156
41
24
49
130
40
23
77
39
230
97
22
265
37
87
53
64
98
21
39
56
41
186
78
166
120
197
91
53
58
84
125
23
18
22
56

572
163
125
108
407
78
49
121
200
88
57
107
68
411
171
41
394
59
156
91
97
138
32
72
107
52
743
172
321
212
311
162
87
95
109
224
417
89
37
165

1.9
1.6
1.5
1.9
2.6
1.8
1.8
2.1
1.5
2.5
2.9
1.5
2.3
1.6
1.7
1.7
1.5
1.6
1.7
1.5
1.6
1.7
1.6
1.7
1.5
1.5
3.4
2.0
1.9
1.7
1.6
1.5
1.6
1.6
1.6
1.6
15.5
5.1
2.2
3.3

0.7
0.6
0.4
0.3
0.2
0.3
1.0
1.2
0.1
1.7
2.0
0.6
1.7
0.4
0.2
0.6
0.1
0.5
0.6
0.5
0.4
0.7
0.2
0.9
0.6
0.4
0.8
0.4
0.1
0.4
0.1
0.5
0.5
0.4
0.9
0.4
6.1
2.6
0.5
0.8

0.3
0.2
0.2
0.1
0.1
0.1
0.4
0.5
0.1
0.7
0.8
0.3
0.7
0.2
0.1
0.3
0.1
0.2
0.3
0.2
0.2
0.3
0.1
0.4
0.3
0.2
0.3
0.2
0.1
0.2
0.1
0.2
0.2
0.2
0.4
0.2
2.5
1.1
0.2
0.3

ferredoxin_4Fe-4S
similar_to_MRP/NBP35_ATP-binding_proteins
putative_dehydrogenase
similar_to_adenylate_cyclases
ATP:sulphurylase_subunit_2
ATP:sulphurylase_subunit_1
regulatory_protein_pyrimidine_biosynthesis
aspartate_carbamoyltransferase_
dihydroorotase

transcriptional_regulator_(MarR_family)
similar_to_phosphatidylethanolamine_N-methyltransferase
lipoprotein
methylmalonyl-CoA_mutase,_a_subunit

yabO/yceC/yfiI_family
putative_transcriptional_regulator
phiRV1_phage_related_protein
phiRV1_phage_related_protein

quinolinate_synthase
L-aspartate_oxidase
imidazole_glycerol-phosphate_dehydratase
possible_acyl-CoA_synthase
probable_sulphate_permease
possible_membrane_protein

fused_nitrate_reductase

1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.2
1.1
1.1
1.1
2.5
1.1
1.1
1.2
1.1
1.1
1.1
1.1
1.1
1.1
1.1
2.5

2.5
1.2
1.4
1.5
2.6
1.7
1.3
1.3
1.6
0.9
1.2
1.0
1.4
1.5
1.9
2.0
1.6
2.5
0.8
0.8
nd
2.6
1.7
nd
nd
0.8
2.7
1.6
2.0
1.4
1.6
1.1
1.1
1.1
0.9
1.2
10.3
2.8
2.1
3.8

2.5
1.8
1.3
1.5
2.7
1.6
1.2
1.4
1.3
1.2
1.6
1.1
1.6
1.5
1.5
1.6
1.4
1.5
0.9
0.9
1.0
2.4
nd
0.8
0.9
nd
2.4
1.6
1.8
1.2
1.4
1.1
1.2
1.2
1.0
1.1
9.5
4.2
1.8
3.0

2.2
1.7
1.3
2.2
2.7
2.0
2.7
3.5
1.5
2.1
1.8
1.2
1.1
2.0
1.8
2.4
1.5
1.7
2.0
2.0
1.4
1.2
1.6
2.2
2.4
1.3
4.5
2.5
2.0
1.9
1.5
2.1
1.6
1.7
1.0
2.0
25.4
4.0
nd
2.5

2.1
2.7
1.1
2.0
2.8
2.0
3.3
3.6
1.5
1.8
1.9
1.1
1.2
2.2
1.7
2.4
1.3
1.6
1.8
1.9
1.6
1.0
1.5
3.0
1.7
1.7
3.4
2.2
1.8
1.2
1.7
2.1
1.4
1.7
1.1
1.7
12.2
3.5
1.9
2.3

1.0
1.2
2.1
2.2
2.2
2.1
1.2
1.7
1.5
5.1
5.9
2.2
5.3
1.1
1.6
1.0
1.6
1.3
2.3
1.8
2.1
1.4
1.7
1.3
1.4
1.9
3.7
1.9
1.8
2.1
1.6
1.3
2.4
2.1
3.1
1.9
18.2
9.7
2.9
4.3

1.2
1.3
1.8
2.0
2.6
1.4
1.1
0.9
1.8
4.0
4.9
2.4
3.4
1.4
1.8
1.0
1.6
1.1
2.2
1.7
1.8
1.4
1.3
1.1
1.3
1.6
3.7
2.4
1.8
2.0
1.8
1.4
1.8
1.6
2.4
1.7
17.5
6.6
2.2
3.6

1057Rv1737c
4000Rv1737c
3279Rv1738
4001Rv1739c
3014Rv1749c
131Rv1756c
3017Rv1764
2776Rv1805c
3693Rv1812c
2971Rv1813c
4411Rv1813c
1528Rv1815
4408Rv1831
5189Rv1853
5188Rv1855c
4466Rv1856c
2301Rv1865c
95Rv1884c
91Rv1892
3943Rv1893
3700Rv1893
2978Rv1894c
3697Rv1899c
86Rv1915
1988Rv1956
2669Rv1989c
2668Rv1991c
1946Rv1992c
2667Rv1993c
2666Rv1995
1944Rv1996
5553Rv1997
4831Rv1997
5552Rv1998c
4828Rv2003c
5549Rv2003c
4827Rv2004c
5548Rv2005c
4826Rv2006
2665Rv2007c

narK2
narK2
IS6110
IS6110
ureD
lppD
aceAa
ctpG
ctpF
ctpF
otsB
fdxA

19
57
22
21
66
161
130
45
29
29
45
92
170
70
75
56
72
447
29
22
33
57
260
98
51
36
20
44
40
18
18
33
50
27
27
22
204
43
22
64

252
101
1169
82
115
248
196
71
54
312
326
159
391
89
122
96
198
969
48
35
53
124
426
147
93
67
38
146
102
43
249
259
201
158
246
148
395
434
68
1252

12.5
1.8
50.4
4.1
1.7
1.5
1.5
1.5
2.0
12.8
12.6
1.5
2.2
1.5
1.5
1.8
2.4
1.9
1.8
1.7
1.5
2.0
1.5
1.5
1.9
1.6
1.8
2.5
2.1
2.0
13.7
9.7
4.4
8.6
12.3
8.4
2.1
9.2
4.0
24.1

3.2
0.4
19.1
1.1
0.5
0.1
0.1
0.2
1.2
6.3
5.5
0.2
0.2
0.4
0.2
1.0
0.6
0.6
0.2
0.7
0.4
0.4
0.2
0.1
0.3
0.6
0.7
1.2
1.0
0.9
3.2
7.1
1.5
8.8
7.5
5.1
0.5
2.9
2.2
11.9

1.3
0.2
7.8
0.4
0.2
0.0
0.0
0.1
0.5
2.6
2.2
0.1
0.1
0.2
0.1
0.4
0.2
0.2
0.1
0.3
0.2
0.2
0.1
0.0
0.1
0.3
0.3
0.5
0.4
0.4
1.3
2.9
0.6
3.6
3.1
2.1
0.2
1.2
0.9
4.9

nitrite_extrusion_protein_
nitrite_extrusion_protein_
possible_sulphate_transporter
possible_integral_membrane_protein

unlikely_orf
probable_dehydrogenase

urease_accessory_protein
probable_monooxygenase_
short-chain_dehydrogenase/reductase_family
Short-chain_alcohol_dehydrogenase

some_similarity_to_dioxygenases
lipoprotein
isocitrate_lyase,_a_module
putative_transcriptional_regulator

probable_cation_transport_ATPase

probable_cation_transport_ATPase_
probable_cation_transport_ATPase_

trehalose-6-phosphate_phosphatase
ferredoxin

1.1
1.3
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.2
1.1
1.3
1.2
2.6
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1

13.5
1.5
36.2
4.4
1.1
1.5
1.5
1.4
1.2
7.3
11.4
1.6
2.1
nd
1.6
0.7
2.0
1.8
2.0
2.9
1.8
1.9
1.7
1.4
2.3
nd
nd
1.6
2.3
nd
17.3
23.8
3.8
26.4
16.5
14.8
1.9
9.0
7.2
47.4

9.1
1.6
20.1
2.2
1.3
1.5
1.4
1.5
1.2
8.5
9.8
1.5
2.0
2.3
1.3
0.8
1.7
1.6
2.0
1.9
2.0
1.9
1.4
1.4
2.1
1.2
1.6
1.4
1.2
1.1
10.5
5.1
3.9
5.3
8.6
5.1
1.9
5.7
2.7
16.3

13.1
1.9
73.1
3.6
1.8
1.5
1.5
1.8
1.4
8.1
4.9
1.9
2.5
1.4
1.8
1.8
3.2
2.6
1.7
1.5
1.6
2.5
1.8
1.5
1.8
2.5
2.7
4.4
3.3
3.5
14.2
7.8
3.6
6.0
4.8
4.5
1.8
13.0
2.3
17.8

8.5
1.3
61.7
4.7
1.6
1.7
1.5
1.6
1.5
12.1
12.4
1.6
2.3
1.5
1.5
1.7
2.9
2.6
1.6
1.5
1.7
2.2
1.4
1.5
1.8
1.8
2.1
3.7
3.2
2.1
10.2
4.7
2.9
2.8
5.1
2.7
1.7
6.7
2.0
23.1

16.9
2.2
57.6
5.0
2.4
1.6
1.6
1.4
4.3
23.0
20.9
1.2
2.1
1.4
1.5
3.0
2.4
1.2
nd
1.3
1.4
1.9
1.5
1.7
1.6
1.2
1.2
2.1
1.4
1.5
17.4
7.9
7.1
5.6
24.2
13.7
2.8
8.7
6.1
16.3

14.1
2.2
53.7
4.6
2.1
1.5
1.6
1.2
2.6
17.8
16.1
1.3
2.0
1.1
1.6
2.7
2.3
1.4
nd
1.1
0.8
1.3
1.4
1.7
1.5
1.1
1.1
1.9
1.3
1.7
12.4
9.2
5.1
5.3
14.7
9.6
2.6
12.4
3.5
23.6

4566Rv2025c
2401Rv2028c
1680Rv2029c
2402Rv2030c
1681Rv2031c
2403Rv2032
1683Rv2035
2405Rv2036
5290Rv2042c
648Rv2043c
4569Rv2043c
5206Rv2077c
4438Rv2111c
5171Rv2161c
4449Rv2162c
4447Rv2166c
4915Rv2182c
4637Rv2188c
434Rv2193
506Rv2220
1163Rv2220
508Rv2224c
636Rv2232
3394Rv2233
4116Rv2234
3395Rv2235
751Rv2241
3113Rv2243
3398Rv2243
752Rv2243
3835Rv2243
3114Rv2244
4120Rv2244
2288Rv2269c
3390Rv2280
885Rv2312
4511Rv2340c
1564Rv2357c
2931Rv2359
1544Rv2412

pfkB
hspX
pncA
pncA
PE_PGRS
ctaE
glnA1
glnA1
ptpA
aceE
fabD
fabD
fabD
fabD
acpM
acpM
PE
glyS
furB
rpsT

45
40
24
19
42
22
53
48
70
63
83
101
305
147
165
346
152
84
333
265
378
66
38
31
38
43
171
151
209
206
373
711
521
23
43
35
48
189
44
155

101
136
264
211
612
1032
95
78
82
94
123
153
485
287
249
537
235
135
587
767
1058
86
59
46
55
63
188
392
513
452
679
1644
948
39
99
56
94
289
73
330

1.9
3.5
12.2
10.6
14.6
45.2
1.7
1.6
1.5
1.5
1.5
1.7
1.5
2.0
1.6
1.5
1.5
1.6
1.8
2.4
2.4
1.5
1.5
1.6
1.5
1.5
1.6
2.6
2.5
2.3
1.8
2.2
1.8
1.5
2.4
1.5
1.7
1.6
1.6
2.3

0.9
1.2
5.6
3.5
3.0
16.5
0.3
0.3
1.2
0.1
0.1
0.7
0.2
0.3
0.2
0.2
0.2
0.3
0.4
1.2
1.1
0.3
0.3
0.2
0.3
0.1
1.0
0.7
0.6
0.4
0.2
0.3
0.2
0.3
0.6
0.4
1.1
0.2
0.3
0.7

0.4
0.5
2.3
1.4
1.2
6.7
0.1
0.1
0.5
0.1
0.0
0.3
0.1
0.1
0.1
0.1
0.1
0.1
0.2
0.5
0.5
0.1
0.1
0.1
0.1
0.1
0.4
0.3
0.2
0.2
0.1
0.1
0.1
0.2
0.2
0.2
0.4
0.1
0.1
0.3

possible_membrane_protein
phosphofructokinase_II
14kD_antigen,_heat_shock_protein_Hsp20_family

similar_to_lincomycin_production_genes
pyrazinamide_resistance/sensitivity
pyrazinamide_resistance/sensitivity

similar_to_alkanal_monooxygenase_beta_chain

cytochrome_c_oxidase_polypeptide_III
glutamine_synthase_class_I
glutamine_synthase_class_I
probable_exported_protease

low_molecular_weight_protein-tyrosine-phosphatase
pyruvate_dehydrogenase_E1_component
malonyl_CoA-[ACP]_transacylase
malonyl_CoA-[ACP]_transacylase
malonyl_CoA-[ACP]_transacylase
malonyl_CoA-[ACP]_transacylase
acyl_carrier_protein_(meromycolate_extension)
acyl_carrier_protein_(meromycolate_extension)
questionable_orf,
similar_to_D-lactate_dehydrogenase

glycyl-tRNA_synthase
ferric_uptake_regulatory_protein
30S_ribosomal_protein_S20

1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
2.5
2.5
1.1
1.1
1.4
1.1
1.1
2.5
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.2
1.1
2.6
1.1
1.1

1.7
3.8
5.9
10.7
10.6
37.2
2.0
1.2
3.9
1.8
1.6
3.1
1.6
2.4
1.6
1.6
1.5
1.5
nd
1.1
1.4
1.8
1.3
1.5
2.1
1.6
3.5
2.1
2.2
2.5
1.9
1.9
1.5
nd
3.1
nd
3.9
2.1
1.8
1.4

1.8
2.5
9.3
6.4
11.2
19.3
1.3
1.4
1.6
1.6
1.5
1.2
1.5
1.9
1.7
1.6
1.4
1.5
1.5
1.2
1.3
1.8
1.3
1.6
1.6
1.4
1.5
1.9
1.8
1.7
1.7
2.0
1.5
1.3
2.5
1.1
1.2
1.4
2.1
1.4

2.8
3.2
9.2
11.8
15.1
56.5
1.8
1.7
1.1
1.5
1.5
1.8
1.7
1.8
1.4
1.7
1.7
1.7
1.8
3.8
3.2
1.0
1.9
1.4
1.4
1.4
1.0
2.6
2.4
2.2
1.8
2.4
1.9
2.0
2.2
2.0
1.2
1.4
1.4
2.3

3.3
2.9
10.5
7.8
16.4
38.6
2.0
1.8
0.9
1.3
1.5
1.5
1.6
1.6
1.2
1.4
1.7
1.3
1.4
3.8
4.2
1.7
1.6
1.5
1.3
1.4
1.1
2.2
2.0
1.9
1.5
2.1
1.9
1.8
1.6
1.7
1.1
1.6
1.6
2.8

1.2
5.8
19.7
16.6
17.2
64.2
1.7
1.8
1.0
1.5
1.4
1.1
1.1
2.1
1.8
1.2
1.3
1.9
1.8
2.2
2.0
1.3
1.5
2.0
1.5
1.6
1.1
3.4
3.2
2.4
2.0
2.4
1.7
1.4
3.0
1.2
1.5
1.6
1.4
2.8

0.9
3.0
18.7
10.4
17.3
55.2
1.5
1.4
0.8
1.4
1.4
1.3
1.2
2.4
1.7
1.3
1.5
1.9
2.4
2.2
2.2
1.2
1.1
1.4
1.3
1.7
1.2
3.3
3.1
3.0
2.0
2.7
2.0
1.2
2.1
1.4
1.4
1.7
1.5
2.9

3654Rv2428
25Rv2438c
513Rv2442c
2364Rv2450c
5248Rv2454c
4527Rv2455c
4532Rv2477c
4533Rv2479c
5257Rv2484c
2958Rv2495c
3680Rv2496c
2959Rv2497c
411Rv2504c
412Rv2506
1654Rv2518c
4537Rv2520c
3119Rv2532c
111Rv2576c
109Rv2580c
3718Rv2581c
2996Rv2582
1768Rv2583c
3717Rv2583c
2241Rv2606c
3340Rv2621c
457Rv2623
1178Rv2624c
456Rv2625c
1177Rv2626c
455Rv2627c
1176Rv2628
454Rv2629
1175Rv2630
4127Rv2631
3408Rv2649
4131Rv2652c
524Rv2657c
525Rv2659c
1247Rv2660c
3667Rv2700

ahpC
rplU
IS6110
pdhC
pdhB
pdhA
scoA
lppS
hisS
ppiB
relA
relA
IS6110
-

226
71
221
139
128
120
162
160
113
51
59
125
127
36
55
108
257
147
59
149
109
51
76
83
35
32
18
49
32
18
51
75
31
55
112
31
111
33
75
86

1114
105
377
243
204
204
209
251
169
97
93
204
192
45
81
224
417
282
84
204
145
75
86
114
53
200
309
300
1266
194
248
510
127
88
174
73
198
148
236
136

4.2
1.6
1.5
1.6
1.5
2.0
1.5
1.6
1.5
1.6
1.5
1.5
1.7
1.7
1.5
1.8
1.7
1.9
1.6
1.5
1.5
1.6
1.5
1.5
1.5
7.3
19.7
6.9
40.6
11.9
5.2
7.4
4.2
1.6
1.6
2.2
1.5
4.1
2.8
1.5

1.3
0.3
0.5
0.4
0.3
0.3
0.4
0.1
0.2
0.7
0.2
0.2
0.2
0.9
0.2
0.5
0.3
0.2
0.4
0.3
0.6
0.2
0.5
0.2
0.3
2.5
8.6
3.3
8.0
3.0
1.3
1.4
1.1
0.2
0.2
1.0
0.4
1.7
1.9
0.2

0.5
0.1
0.2
0.2
0.1
0.1
0.2
0.0
0.1
0.3
0.1
0.1
0.1
0.4
0.1
0.2
0.1
0.1
0.2
0.1
0.2
0.1
0.2
0.1
0.1
1.0
3.5
1.3
3.3
1.2
0.5
0.6
0.4
0.1
0.1
0.4
0.2
0.7
0.8
0.1

alkyl_hydroperoxide_reductase
50S_ribosomal_protein_L21
oxidoreductase,_beta_subunit
probable_oxidoreductase_alpha_subunit
ABC-transporter_ATP_binding_protein

dihydrolipoamide_acetyltransferase
pyruvate_dehydrogenase_E1_component_b_subunit
pyruvate_dehydrogenase_E1_component_a_subunit
3-oxo_acid:CoA_transferase,_a_subunit
transcriptional_regulator_(TetR/AcrR_family)
lipoprotein
secreted?
histidyl-tRNA_synthase
putative_glyoxylase_II
peptidyl-prolyl_cis-trans_isomerase
(p)ppGpp_synthase_I
(p)ppGpp_synthase_I
Similar_to_G1209317_ethylene-inducible_protein
putative_transcriptional_regulator

phiRV2_phage_related_protein
similar_to_gp36_of_mycobacteriophage_L5_
phiRV2_integrase

1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1

3.8
2.0
1.0
1.1
1.1
2.0
1.3
1.5
1.7
0.9
1.3
1.8
nd
nd
1.8
1.2
1.6
2.1
2.1
1.4
0.9
1.6
2.2
1.9
1.2
10.1
37.1
13.0
42.9
16.8
7.4
9.1
2.9
1.4
1.7
1.5
1.0
4.1
1.5
1.2

3.2
1.8
1.1
1.2
1.1
2.1
1.3
1.5
1.4
1.0
1.5
1.7
1.3
0.8
1.7
1.1
1.5
1.9
2.0
1.4
1.0
1.5
2.1
1.5
nd
9.8
17.3
5.2
26.8
11.7
5.2
6.6
3.8
1.4
1.4
1.2
1.0
2.8
1.4
1.3

5.7
1.3
1.9
1.8
1.7
1.5
1.2
1.6
1.5
2.3
1.8
1.5
1.7
1.0
1.5
2.4
1.6
2.0
1.1
1.2
1.2
1.4
0.9
1.4
1.6
5.9
16.2
5.0
39.9
9.9
4.3
5.8
4.3
1.5
1.6
3.7
2.1
6.1
4.7
1.7

6.0
1.6
2.2
1.5
1.4
1.6
1.2
1.5
1.2
2.4
1.6
1.4
1.7
3.1
1.4
2.1
1.4
1.9
1.2
1.2
1.4
1.4
1.0
1.2
1.3
4.0
15.3
3.8
47.6
9.2
3.6
6.2
3.7
1.4
1.4
3.1
1.6
6.2
5.6
1.5

3.1
1.4
1.4
2.2
1.7
2.1
1.8
1.6
1.5
1.4
1.4
1.5
2.0
2.2
1.3
1.8
1.9
1.9
1.9
1.7
2.4
1.8
1.3
1.5
2.0
8.8
16.0
7.7
37.6
14.2
5.0
8.8
4.4
2.0
1.8
1.8
1.6
2.9
1.7
1.8

3.2
1.6
1.5
1.8
1.9
2.4
2.1
1.7
1.5
1.2
1.2
1.4
1.8
1.6
1.5
1.8
2.1
1.6
1.5
1.8
2.0
1.8
1.4
1.5
1.6
5.6
16.0
6.7
48.7
9.6
5.7
8.0
6.1
1.7
1.5
1.7
1.7
2.3
1.9
1.3

2948Rv2706c
62Rv2711
4884Rv2738c
196Rv2748c
197Rv2750
920Rv2753c
3084Rv2760c
3086Rv2764c
203Rv2774c
3088Rv2780
3810Rv2781c
80Rv2814c
79Rv2816c
799Rv2830c
2494Rv2830c
1747Rv2873
2631Rv2876
4799Rv2890c
4803Rv2909c
496Rv2920c
499Rv2926c
32Rv2927c
4658Rv2927c
1574Rv2963
2377Rv2989
4547Rv3008
1998Rv3012c
4889Rv3029c
3001Rv3074
1876Rv3117
4762Rv3125c
5484Rv3126c
4763Rv3127
4764Rv3128c
5485Rv3128c
3841Rv3129
5486Rv3129
1776Rv3130c
3036Rv3130c
3757Rv3131

ideR
ftsK
dapA
thyA
ald
IS6110
mpt83
rpsB
rpsP
amt
gatC
fixA
cysA3
PPE
-

107
88
385
202
147
304
72
141
172
87
114
113
152
63
19
51
168
255
234
20
142
252
166
53
214
165
44
180
40
210
178
22
24
18
41
18
18
40
18
63

164
124
603
337
228
451
162
211
270
904
464
183
188
136
33
111
281
434
405
37
232
423
263
80
383
234
80
293
70
386
271
534
824
302
469
413
312
373
192
323

1.5
1.5
1.7
1.8
1.5
1.5
2.2
1.5
1.6
9.8
2.9
1.5
1.5
1.9
1.6
1.8
1.5
1.6
1.5
1.7
1.5
1.7
1.6
1.5
1.5
1.5
1.8
1.7
1.8
1.5
1.5
22.7
36.0
17.5
12.9
24.5
17.5
14.0
9.8
4.6

0.6
0.1
0.8
0.3
0.1
0.3
0.2
0.3
0.1
10.2
2.5
0.2
1.0
0.7
0.4
0.6
0.3
0.4
0.4
0.7
0.2
0.2
0.3
0.3
0.8
0.2
0.9
0.7
0.3
0.4
0.2
8.6
16.2
6.7
5.6
7.0
6.2
6.7
2.4
1.1

0.2
0.0
0.3
0.1
0.1
0.1
0.1
0.1
0.1
4.2
1.0
0.1
0.4
0.3
0.1
0.2
0.1
0.2
0.2
0.3
0.1
0.1
0.1
0.1
0.3
0.1
0.4
0.3
0.1
0.2
0.1
3.5
6.6
2.7
2.3
2.9
2.5
2.7
1.0
0.5

iron_dependent_repressor,_IdeR
chromosome_partitioning
putative_dehydrogenase
dihydrodipicolinate_synthase
thymidylate_synthase
L-alanine_dehydrogenase
probable_oxidoreductase

similar_to_phage_P1_phd_gene
similar_to_phage_P1_phd_gene
surface_lipoprotein_Mpt83
30S_ribosomal_protein_S2
30S_ribosomal_protein_S16
putative_ammonium_transporter

integral_membrane_protein
transcriptional_regulator_(IclR_family)
glu-tRNA-gln_amidotransferase,_subunit_C_
electron_transfer_flavoprotein_b_subunit
thiosulfate_sulfurtransferase

1.1
1.1
1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.1
1.1
2.5
1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.1
1.1
2.6
1.1

1.9
1.6
1.2
2.3
1.4
1.5
2.2
1.2
1.6
4.1
1.6
1.5
0.7
1.5
1.7
1.4
1.2
1.0
1.1
1.5
1.7
1.9
2.0
1.1
1.3
1.4
0.8
1.1
1.9
1.4
1.2
34.2
64.0
22.9
23.9
37.6
29.6
2.6
12.2
3.3

2.0
1.5
1.0
2.0
1.3
1.4
2.2
1.2
1.4
4.1
1.6
1.3
0.6
1.2
1.3
1.4
1.2
1.0
1.0
1.3
1.6
1.9
1.9
1.4
1.2
1.3
1.1
1.0
1.9
1.4
1.2
15.4
18.5
8.1
11.1
21.7
13.5
13.9
8.3
3.6

2.0
1.3
1.4
1.5
1.6
1.4
2.3
1.5
1.6
22.4
7.0
1.7
1.1
2.8
1.9
2.6
1.9
1.8
1.9
2.2
1.8
1.6
1.5
1.6
2.7
1.4
1.8
1.6
1.6
2.2
1.5
33.0
37.5
15.9
11.4
22.9
18.4
22.6
13.3
5.9

1.5
1.6
1.4
1.5
1.5
1.2
2.0
1.5
1.5
23.3
4.9
1.7
1.1
2.7
2.1
2.6
1.7
1.8
1.6
2.6
1.4
2.0
1.4
1.7
2.4
1.2
1.8
1.6
1.3
1.9
1.4
19.1
21.6
14.7
7.6
16.8
14.1
13.1
8.7
4.1

0.7
1.4
2.8
1.8
1.5
2.0
2.0
1.6
1.6
2.1
1.2
1.5
2.2
1.6
1.5
1.7
1.5
1.9
1.8
nd
1.5
1.3
1.3
1.9
0.8
1.6
3.3
2.3
2.3
1.0
1.8
16.2
39.6
27.2
11.0
25.4
16.1
13.6
8.5
5.7

0.8
1.4
2.7
1.9
1.7
1.6
2.5
1.9
1.8
2.4
1.0
1.6
3.2
1.4
1.2
1.4
1.7
1.9
1.6
0.8
1.3
1.5
1.6
1.4
0.8
1.8
2.2
2.7
1.7
1.2
1.8
18.6
34.7
16.2
12.3
22.7
13.5
18.1
7.7
5.2

3035Rv3132c
3756Rv3133c
3034Rv3134c
3033Rv3136
3647Rv3139
228Rv3139
949Rv3139
950Rv3139
272Rv3139
2925Rv3140
948Rv3140
226Rv3140
3467Rv3173c
1308Rv3188
3068Rv3269
3790Rv3270
181Rv3271c
3070Rv3285
3792Rv3286c
3793Rv3288c
2501Rv3290c
3794Rv3290c
1780Rv3291c
3074Rv3293
4206Rv3337
3485Rv3338
5356Rv3340
3822Rv3360
3826Rv3367
1281Rv3379c
3442Rv3380c
1750Rv3417c
3418Rv3418c
535Rv3420c
3079Rv3443c
1013Rv3451
3179Rv3462c
300Rv3480c
3184Rv3484
2758Rv3502c

PPE
fadE24
fadE24
fadE24
fadE24
fadE24
fadE23
fadE23
fadE23
ctpC
accA3
sigF
lat
lat
aldB
metC
PE_PGRS
IS6110
groEL1
groES
rimI
rplM
infA
cpsA
-

28
23
23
312
126
109
45
116
152
116
123
100
79
21
50
45
88
50
58
49
52
72
46
26
67
48
161
59
94
93
126
60
184
173
292
68
170
110
258
18

214
266
273
526
258
224
73
241
279
250
236
193
181
26
254
135
292
74
109
70
155
167
78
42
126
115
618
89
165
139
189
108
582
287
465
107
285
185
368
20

9.8
11.9
11.5
1.8
2.1
2.1
2.1
2.0
1.8
1.9
1.8
1.7
2.1
1.5
3.7
2.5
2.1
1.5
1.6
1.5
3.1
2.1
1.7
1.6
1.7
2.2
2.8
1.6
1.8
1.6
1.5
1.6
2.5
1.5
1.6
1.5
1.7
1.9
1.5
1.5

4.0
4.2
2.6
1.0
0.7
0.6
1.4
0.5
0.4
0.7
0.8
0.7
0.3
0.7
3.3
2.0
1.9
0.5
0.4
0.2
1.5
0.8
0.5
0.3
0.5
0.7
1.6
0.5
0.6
0.2
0.1
0.6
2.5
0.5
0.5
0.3
0.6
0.5
0.2
0.5

1.6
1.7
1.1
0.4
0.3
0.3
0.6
0.2
0.2
0.3
0.3
0.3
0.1
0.3
1.4
0.8
0.8
0.2
0.2
0.1
0.6
0.3
0.2
0.1
0.2
0.3
0.7
0.2
0.3
0.1
0.0
0.2
1.0
0.2
0.2
0.1
0.2
0.2
0.1
0.2

sensor_histidine_kinase
two-component_response_regulator

acyl-CoA_dehydrogenase_
acyl-CoA_dehydrogenase_
acyl-CoA_dehydrogenase_
acyl-CoA_dehydrogenase_
acyl-CoA_dehydrogenase_
acyl-CoA_dehydrogenase_
acyl-CoA_dehydrogenase_
acyl-CoA_dehydrogenase_
transcriptional_regulator_(TetR/AcrR_family)
probable_heat_shock_protein
cation_transport_ATPase
acetyl/propionyl_CoA_carboxylase_a_subunit
ECF_subfamily_sigma_subunit
lysine-e_aminotransferase
lysine-e_aminotransferase
transcriptional_regulator_(Lrp/AsnC_family)
aldehyde_dehydrogenase

cystathionine_b-lyase
possible_ABC_transporter
unknown_transketolase,_interrupted_by_IS6110
60_kD_chaperonin_1
10_kD_chaperone
ribosomal_protein_S18_acetyltransferase
50S_ribosomal_protein_L13
probable_cutinase
initiation_factor_IF-1
cpsA,CpsA_:_Q50160
putative_dehydrogenase

1.1
1.1
1.1
1.1
1.1
2.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
2.5
1.1
1.1
1.1
2.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1

10.7
7.8
8.0
0.8
3.2
3.1
4.7
2.3
2.5
2.5
2.5
1.9
1.9
1.5
2.2
1.4
0.8
1.2
1.4
1.1
1.3
1.2
1.0
1.7
1.2
1.5
1.0
1.3
2.8
1.8
1.7
1.1
1.1
0.9
1.1
1.4
1.1
2.3
1.6
1.8

9.1
10.0
11.1
0.7
2.6
2.5
2.3
2.1
2.1
2.2
2.1
1.7
1.6
1.0
2.1
1.4
0.7
1.0
1.3
1.4
1.2
1.2
1.2
1.2
1.2
1.6
0.9
1.5
2.2
1.5
1.5
1.5
0.9
0.9
1.1
1.3
1.1
2.0
1.4
1.8

5.8
10.4
13.4
1.7
2.2
2.1
1.7
2.4
1.9
2.6
2.3
2.6
2.6
nd
8.3
5.0
5.2
1.4
2.1
1.4
4.7
3.0
1.7
1.4
2.6
2.5
5.1
1.3
1.8
1.4
1.5
2.5
5.7
1.7
1.7
1.7
1.8
1.3
1.4
nd

5.6
9.0
10.8
1.5
2.1
1.9
1.5
2.2
1.7
2.3
2.3
2.2
2.0
2.7
7.5
5.1
4.0
1.5
2.2
1.5
4.2
2.7
2.0
2.1
1.4
1.9
4.0
1.2
1.6
1.7
1.4
2.1
5.6
1.9
1.4
2.0
1.4
1.4
1.2
nd

16.1
18.1
10.1
3.1
1.4
1.5
1.2
1.2
1.4
1.1
0.9
0.9
2.4
1.1
0.9
1.1
1.1
2.2
1.5
1.8
3.7
2.5
2.3
1.9
1.8
3.5
2.9
2.4
1.3
1.6
1.6
1.2
0.7
1.8
2.0
1.6
2.3
2.4
1.6
1.6

11.8
16.2
15.4
2.9
1.3
1.4
1.0
1.5
1.4
1.0
0.9
0.9
1.9
1.1
1.1
1.0
1.0
1.9
1.5
1.6
3.7
2.3
1.9
1.5
1.8
2.2
2.6
1.9
1.2
1.4
1.6
1.1
0.8
1.9
2.2
1.2
2.5
2.2
1.6
0.8

2037Rv3503c
4925Rv3515c
5647Rv3516
157Rv3526
3762Rv3535c
3040Rv3536c
3039Rv3538
155Rv3542c
876Rv3543c
873Rv3549c
175Rv3570c
176Rv3572
177Rv3574
649Rv3584
4157Rv3614c
3435Rv3615c
4156Rv3616c
5008Rv3617
1029Rv3626c
1713Rv3667
4610Rv3722c
2454Rv3743c
1509Rv3769
4394Rv3776
1513Rv3790
5682Rv3801c
2077Rv3810
5140Rv3841
2128Rv3842c
4418Rv3842c
5139Rv3843c
2252Rv3853
1530Rv3854c
2251Rv3855
1529Rv3856c
5138Rv3857c
3195Rv3908

fdxD
fadD19
echA19
ufaA2
fadE29
lpqE
ephA
acs
fadD32
pirG
bfrB
glpQ1
glpQ1
menG
-

18
48
56
42
18
20
31
38
32
166
89
53
23
125
140
137
99
63
75
70
183
18
97
90
112
273
245
93
26
36
85
52
72
68
89
166
94

29
84
86
86
29
31
78
64
61
252
166
94
38
220
378
661
349
127
118
100
289
23
152
131
167
600
407
914
215
87
159
153
311
155
128
237
342

1.7
1.7
1.5
2.0
1.5
1.5
2.5
1.6
1.9
1.5
1.9
1.6
1.6
1.6
2.1
3.7
2.9
1.5
1.7
1.6
1.6
1.7
1.5
1.6
1.5
2.0
1.5
8.9
7.6
2.2
1.7
3.1
7.0
2.2
1.6
1.5
4.0

0.3
0.4
0.3
0.5
0.4
0.2
0.7
0.8
0.5
0.1
0.5
0.3
0.2
0.4
2.1
3.6
2.6
0.5
0.4
0.3
0.1
0.6
0.1
0.4
0.6
0.5
0.5
3.3
1.7
0.3
0.5
1.6
6.6
0.7
0.4
0.3
1.5

0.1
0.2
0.1
0.2
0.2
0.1
0.3
0.3
0.2
0.0
0.2
0.1
0.1
0.2
0.8
1.5
1.1
0.2
0.2
0.1
0.1
0.3
0.0
0.2
0.2
0.2
0.2
1.4
0.7
0.1
0.2
0.7
2.7
0.3
0.1
0.1
0.6

probable_ferredoxin
acyl-CoA_synthase
enoyl-CoA_hydratase/isomerase_superfamily_
putative_phthalate_oxygenase
acetaldehyde_dehydrogenase
aromatic__hydrocarbon_degradation
unknown_fatty_acid_methyltransferase
acyl-CoA_dehydrogenase_
short-chain_alcohol_dehydrogenase_family
putative_oxidoreductase
transcriptional_regulator_(TetR/AcrR_family)
lipoprotein

probable_epoxide_hydrolase
acetyl-CoA_synthase
probable_cation-transporting_ATPase
possible_coiled-coil_protein
putative_oxidoreductase
acyl-CoA_synthase
cell_surface_protein_precursor_(Erp_protein)
bacterioferritin
glycerophosphoryl_diester_phosphodiesterase
glycerophosphoryl_diester_phosphodiesterase
probable_membrane_protein
S-adenosylmethionine:2-demethylmenaquinone_
probable_monooxygenase
putative_transcriptional_regulator

1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.4
1.1
1.1
1.1
1.1
1.1
1.2
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
1.1
2.6
1.1
1.1
1.1
1.1
1.1
1.1
1.1

2.0
1.4
1.2
1.8
1.8
1.6
2.1
0.6
1.3
1.6
1.4
2.1
1.6
1.1
0.8
1.1
1.1
1.7
1.6
1.7
1.6
2.0
1.4
1.9
2.1
1.5
1.0
8.3
8.5
2.2
1.1
5.2
18.2
1.8
1.7
1.4
2.4

1.8
1.3
1.1
1.3
1.8
1.4
2.4
0.6
1.4
1.5
1.2
1.4
1.5
1.0
0.8
1.1
1.1
1.0
2.1
1.7
1.6
2.2
1.4
1.9
0.9
1.4
0.8
7.3
6.6
2.0
1.2
3.6
11.9
2.5
1.4
1.3
2.6

1.4
1.8
1.6
2.3
1.9
1.6
2.8
1.8
2.1
1.5
1.9
1.9
1.9
1.9
5.5
8.9
6.8
1.3
1.3
1.3
1.6
nd
1.6
1.1
0.9
2.5
1.8
14.3
9.6
2.7
2.1
4.2
4.1
3.1
1.2
1.3
3.3

2.1
2.2
1.8
2.6
1.4
1.8
3.6
2.2
2.7
1.4
2.2
1.7
1.8
2.0
4.0
7.7
5.8
1.5
1.3
1.1
1.4
1.8
1.5
1.2
1.1
1.8
1.5
11.3
8.9
2.0
2.2
3.0
4.6
3.0
1.3
1.3
5.9

1.7
2.0
1.8
2.1
1.3
1.5
2.1
2.2
2.1
1.5
2.4
1.4
1.3
1.8
0.8
1.5
1.2
1.3
2.0
1.9
1.6
nd
1.5
1.7
2.0
2.2
2.1
5.6
5.7
2.0
1.9
1.2
1.7
1.4
2.1
1.8
4.4

1.3
1.4
1.5
1.7
0.8
1.2
1.8
2.2
1.9
1.6
2.4
1.3
1.3
1.8
0.9
1.7
1.4
2.5
2.1
1.8
1.8
0.8
1.5
1.8
1.9
2.5
2.1
6.4
5.9
2.2
1.6
1.1
1.8
1.6
1.9
2.0
5.7