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On the Regulation
of Guanosine
Tetraphosphate
Levels in
Stringent and Relaxed Strains of Escherichia
coli
(Received for publication,
ROBERT
A. LAZZARINI
AND
MICHAEL
CASHEL
From the Laboratory of Molecular Biology, National Institute of Neurological Diseasesancl Stroke, ilational
and Weuare, BeInstitutes of Health, Public Health Service, TJnited States Department of Health, Education,
thesda,Maryland 20014
JONATHAN
GALLANT
leE+, strin-
tion and the kinetics with which changes in ppGpp levels are
effected by the cell suggests that this compound participates in
the amino acid control of RNA synthesis (9). Direct support
for the causal role of ppGpp in the inhibition of ribosomal RNA
synthesis was obtained by Travers, Kamen, Schleif, and Cnshel
(12, 13). They found that ribosomal RNA synthesis required,
in addition to the core RNA polymerase and u factor, a protein
factor, $r. They further showed that the #r-mediated
stimulation of ribosomal RNA synthesis was preferentially
inhibited
by PPGPP.
Under conditions other than amino acid deprivation,
both
relaxed and stringent cells are able to regulate the rate of ribosomal RNA synthesis and adjust the RNA:DNA
ratio of the
cell (7). When transferred from a rich medium to a poor one,
both relaxed and stringent cells sharply restrict their synthesis
of ribosomal RNA while allowing continued protein accumulation (14). When the RNA to protein ratio characteristic of the
new medium is achieved, ribosomal RNA synthesis resumes at a
rate characteristic of cells cultured on the poorer medium.
The
mechanism controlling RNA synthesis during growth rate transitions is not understood at present.
However, the fact that it
shares several characteristics with that operating during amino
acid starvation of a stringent strain suggests that they may be
related (14-16).
In the present communication
we show that during growth
rate transitions
both relaxed and stringent
cells accumulate
ppGpp in amounts approaching those observed during the stringent response to amino acid starvation.
Similarly,
during a
carbon source deprivation
both relaxed and stringent cells accumulate large amounts of ppGpp.
The basal levels of ppGpp
found in relaxed and stringent cells during balanced growth are,
in most cases, the same and vary inversely with growth rate and
RNA content of the cells. On the basis of these observations
we suggest that the intracellular
ppGpp levels and the rate of
ribosomal RNA synthesis are interrelated.
EXPERIMENTAL
PROCEDURE
4381
SUMMARY
4382
TIME (hours)
FIG. 1. Accumulation
of ppGpp
by Escherichia
coli during
methionine
deprivation.
At zero time growing
cultures
of E. coli
NF161 and NF162 were filtered,
washed,
and resuspended
in fresh
medium
containing
3 pg per ml of methionine.
[32P]PO(
(400
&i per ml) was added to a l-ml portion
of each culture.
Growth
(- - -) was monitored
turbidimetrically
in the unlabeled
culture
while
ppGpp
accumulation
(--)
was measured
in aliquots
in
the labeled
culture.
Issue of July
R. A. LaxxariG,
25, 1071
IV.
Cashel,
and
J. Gallant
4383
TABLE
with
levels
arginine
together.
alone,
methionine
alone,
[32P]orthophosphate
each culture,
and samples
after 30 min.
Labeling
were
or arginine
and methionine
for ppGpp
determinations
condition
Complete..
- Methionine.
..
. . .
- Arginine. .
- Methionine
and arginine. . .
14
14.6
12.1
39.4
TIME
might
in fact
be related
to an endogenous
unpublished
amino
acid
deprivation
experiments.
glu-
FIG.
2. Accumulation
of ppGpp by Escherichia
coli NFlGl
md
NF162 during
glucose deprivation.
At zero time growing
cultures
of each organism
were filtered,
washed,
and resuspended
in fresh
medium
containing
0.025%
glucose.
[ZP]P04
(200 pCi per ml)
was added to l-ml portions
of each culture.
Growth
(- - -) and
ppGpp
accumulation
(---)
were monitored
as in Fig. 1.
500,
TIME (hours)
FIG.
3. Accumulation
of ppGpp
by Escherichia
coli NFl61
and
NF162
during
a glucose
to succinate
step-down
kansition.
1Xach
strain
of E. coli was cultured
in Tris minimal
medium
containing
0.025%
glucose
and 0.394 succinate
as sole carbon
sources.
At
zero time [32P]POd was added to l-ml portions
of each culture
to
yield a final concentration
of 100 &i
per pmole.
Growth
(-- - -)
and ppGpp
accumulation
(--)
were monitored
during
the collrse
of the step-down
transition
as in Fig. 1.
case. Thus, the rapid accumulation of ppGpp in NFl61 rn:ly reflect a response to amino acid starration, superimposed on c::wbon
source deprivation.
The relased strain being insensitive
to
amino
acid
deprivation
however
would
synthesize
ppGp1)
ill re-
unpublished
experiments.
increase above its basal level of 0.01 to 0.02 nmole per AeoO. The
failure of NF162 to increase its ppGpp level cannot be attributed
to a lack of severity of the amino acid starvation, since deprivation of arginine alone or simultaneously
with methionine only
marginally
increases the intracellular
concentration
of ppGpp
(Table I).
Accumulation
of ppGpp during Carbon LIeprivation and StepDown Transitions-The
ability of relaxed strains to accumulate
substantial amounts of ppGpp can be shown during a simple
carbon source starvation.
In Fig. 2 the effects of glucose starvation on the ppGpp levels of NF161 and NF162 are shown. The
stringent strain, NF161, upon carbon deprivation
accumulates
amounts of ppGpp that are equivalent to those found in amino
acid-deprived
cells. The relaxed counterpart,
NF162, also accumulates ppGpp upon carbon deprivation, but at a slower rate:
after 1 hour of deprivation the level of ppGpp in the relaxed
strain is approximately one-half that found in t,he stringent strain
after 10 min of deprivation.
Qualitatively,
the same results can
be observed during a step-down transition between a rich and a
poor
medium.
In the example shown in Fig. 3, NF161 and
NF162 exhaust the glucose present in the medium at a cell density
of 2 x lo8 and are forced to use succinate that is also present in
the medium as a source of carbon. As pointed out by Niedhardt
(7), both cultures traverse the step-down transition in a nearly
identical manner.
After depleting the glucose both strains enter
a diauxic lag during which the turbidity of the cultures slowly increases, presumably as the result of the synthesis and accumulation of protein and DNA.
RNA accumulation abruptly ceases
at the break in the growth curve and does not resume until the
turbidity of the culture increases 1.35.fold above that observed at
glucose depletion.2
During this period the RNh:DNA
ratio of
the cells is adjusted to that characteristic of cells cultured on the
poorer medium (15). In the present case the RNb1:DNA
ratio
changes from 7.4 to 5.5 (see below and Fig. 5).
depletion of the glucose both strains behave as they do
Upon
during
a simple
glucose
deprivation
and accumulate ppGpp, although a utilizable carbon source is present in the media. The
difference in the kinetics of appearance of ppGpp in the two
strains during the carbon deprivation
or step-down transition
(hours)
4384
(hours)
1 X 10-4 M phosphate.
[32P]P0,
was added
to portions
246, No. 14
to approximately
one-third of their normal size but do not undergo any further change. The int.racellular
concentration
of
ppGpp, on the other hand, first expands slightly, and then contracts upon continued phosphate deprivation.
Neither uracil nor guanine deprivation of stringent auxotrophs
of E. coli elicits ppGpp accumulation.
Treatment
of E. coli
with colicin El leads to the rapid inhibition of RNA, protein, and
DNA syntheses (25). It has been proposed that the inhibition of
these diverse synthetic processes is a secondary effect of a primary inhibition
of oxidative phosphorylation
(25). Treatment
of NF161 and NF162 with colicin preparations at a multiplicity
of
5 leads to an abrupt reduction in the intracellular
levels of ATP
and GTP but less than a 2-fold increase in the intracellular
ppGpp concentration.
Intracellular
Levels of ppGpp during Balanced Growth-Under
all of the experimental
and nutritional
conditions examined except amino acid deprivation, relaxed and stringent cells similarly
regulate their intracellular
ppGpp levels. We were led to investigate whether the similarity in the control of ppGpp levels
extended to cells in balanced growth as well. For this purpose,
ppGpp levels were measured in relaxed and stringent cells growing on several media which support growth at widely different
rates. Since the RNA content of a cell varies regularly with
growth rate (26,27), this comparison also can reveal a systematic
variation of ppGpp level with RNA content.
The results, shown
in Fig. 5, indicate that relaxed and stringent cells contain approximately the same level of ppGpp when cultured in the same
medium, except for glucose minimal medium.
In that case the
relaxed contains about one-third the ppGpp level of the stringent (11).
Furthermore, it is clear that with the same exception,
the levels of ppGpp vary regularly and approximately
linearly
with the RNA content of the cell.
DISCUSSION
,\
IO
12
RNA/DNA
NF162
(A)
were
cultured
on minimal
media
containing
as a sole
55 min with
glucose,
glucose
plus
Casamino
TIME
Vol.
lssuc
unpublished
experiments.
4385
Gallant
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