FITv2.

0b Updates (March 20, 2012):

1. Added EEG modality in parallel ICA. The following files are modified:
a. ica_fuse/ica_fuse_defaults.m
b. ica_fuse/ica_fuse_analysis/ica_fuse_createMask.m
c. ica_fuse/ica_fuse_parallelICA/ica_fuse_display_parallel_ica_comp.m
d. ica_fuse/ica_fuse_parallelICA/ica_fuse_parallelICA_displayGUI.m
e. ica_fuse/ica_fuse_parallelICA/ica_fuse_run_parallelICA.m
f. ica_fuse/ica_fuse_parallelICA/ica_fuse_select_parallelICA_data.m
g. ica_fuse/ica_fuse_parallelICA/ica_fuse_write_parallel_ica_comp.m
2. User interface controls enable property is set to 'inactive' instead of 'off'
in setup gui in joint ica and parallel ICA . The following files are modified:
a. ica_fuse/ica_fuse_setup_analysis.m
b. ica_fuse/ica_fuse_setup_analysis_cca_ica.m
c. ica_fuse/ica_fuse_parallelICA/ica_fuse_setup_parallelICA.m
d. ica_fuse/ica_fuse_utilities/ica_fuse_enable_control.m
FITv2.0b Updates (Feb 24, 2012):
Removed fourth output argument when using fileparts function in ica_fuse/ica_fus
e_utilities/ica_fuse_ui_select_data.m.
FITv2.0b Updates (Feb 15, 2012):
Option is added to select time units in create erp-fmri movie utility. File ica_
fuse/ica_fuse_display/ica_fuse_create_movie_erp_fmri.m is modified.
FITv2.0b Updates (Dec 15, 2011):
1. Added parallel ICA source code files. The following files are added:
a. ica_fuse/ica_fuse_parallelICA/ica_fuse_falsemaxdetect.m
b. ica_fuse/ica_fuse_parallelICA/ica_fuse_runica_parallelica_AA.m
c. ica_fuse/ica_fuse_parallelICA/ica_fuse_runica_parallelica_AS.m
FITv2.0b Updates (Oct 28, 2011):
1. Added options to do MCCA when there are more than two modalities. The followi
ng files are added or modified:
a.
b.
c.
d.
e.
f.
g.
h.
i.
j.
k.
l.

ica_fuse/ica_fuse_define_parameters.m
ica_fuse/ica_fuse_define_parameters_cca_ica.m
ica_fuse/ica_fuse_setup_analysis.m
ica_fuse/ica_fuse_setup_analysis_cca_ica.m
ica_fuse/ica_fuse_analysis/ica_fuse_calculateICA.m
ica_fuse/ica_fuse_analysis/ica_fuse_dataReduction.m
ica_fuse/ica_fuse_analysis/ica_fuse_mcca.m
ica_fuse/ica_fuse_analysis/ica_fuse_run_analysis.m
ica_fuse/ica_fuse_analysis/icatb_mccaN.m
ica_fuse/ica_fuse_batch_files/input_data_fusion_1.m
ica_fuse/ica_fuse_batch_files/input_data_fusion_2.m
ica_fuse/ica_fuse_batch_files/ica_fuse_sort_components.m

2. icatb/ica_fuse_utilities/ica_fuse_showcwdHistory.m is modified to remove the

fourth output argument returned by fileparts function.
3. Changed broadman label to brodmann in talairach script.
FITv2.0b Updates (Aug 10, 2011):

1. Flip parameter for analyze images is set to 1 in ica_fuse/ica_fuse_defaults.m

.
2. ica_fuse/ica_fuse_talairach_scripts/ica_fuse_talairach.m file is modified to
include the flip sign in computing real world coordinates before sending to tala
irach server. R/L is removed as the
coordinates are already in neurological format.
FITv2.0b Updates (April 04, 2011):
1. Added an option to run specific portions of the analysis. File ica_fuse/ica_f
use_run_analysis.m is modified.
FITv2.0b Updates (Feb 15, 2011):
1. Added spm2 MEX binaries for Windows 64 bit OS. The following files are modifi
ed:
a. ica_fuse/ica_fuse_spm2_files/ica_fuse_spm_list_files.mexw64
b. ica_fuse/ica_fuse_spm2_files/ica_fuse_spm_platform.m
c. ica_fuse/ica_fuse_spm2_files/ica_fuse_spm_sample_vol.mexw64
d. ica_fuse/ica_fuse_spm2_files/ica_fuse_spm_slice_vol.mexw64
e. ica_fuse/ica_fuse_spm2_files/ica_fuse_spm_win32utils.mexw64
FITv2.0b Updates (Jan 19, 2011):
1. Added mCCA code to handle CCA + ICA fusion on multi modalities. The following
files are added or modified:
a. ica_fuse/ica_fuse_setup_analysis_cca_ica.m
b. ica_fuse/ica_fuse_setup_analysis.m
c. ica_fuse/ica_fuse_analysis/ica_fuse_backReconstruct.m
d. ica_fuse/ica_fuse_analysis/ica_fuse_calculateICA.m
e. ica_fuse/ica_fuse_analysis/ica_fuse_dataReduction.m
f. ica_fuse/ica_fuse_analysis/ica_fuse_mcca.m
g. ica_fuse/ica_fuse_display/ica_fuse_plotICALoading.m
h. ica_fuse/ica_fuse_display/ica_fuse_sort_components.m
i. ica_fuse/ica_fuse_utilities/ica_fuse_cca.m
2. File ica_fuse/ica_fuse_utilities/ica_fuse_histnd.m is changed to not sort the
data while computing histograms.
3. Function ica_fuse/ica_fuse_analysis/ica_fuse_scaleCompData.m is modified to a
pply the same sign flip between the features.
4. Added spm MEX binaries for linux 32 OS. The following files are modified:
a. ica_fuse/ica_fuse_spm5_files/ica_fuse_mat2file.mexglx
b. ica_fuse/ica_fuse_spm5_files/ica_fuse_spm_sample_vol.mexglx
c. ica_fuse/ica_fuse_spm5_files/ica_fuse_spm_slice_vol.mexglx
FITv2.0b Updates (July 09, 2010):
1. Default JVM used for talairach daemon software is set to the JVM shipped with
the MATLAB software. ica_fuse/ica_fuse_talairach_scripts/ica_fuse_talairach.m i
s modified.
FITv2.0b Updates (July 02, 2010):
1. Computing dominant SNPs for multiple gene modalities is now handled. ica_fuse
/ica_fuse_parallelICA/ica_fuse_parallelICA_displayGUI.m is updated.

FITv2.0b Updates (June 15, 2010):

1. Added options for pasting file names in the batch script and GUI. The followi
ng files are modified:
a. ica_fuse/ica_fuse_dataSelection.m
b. ica_fuse/ica_fuse_input_output/ica_fuse_write_feature_data.m
c. ica_fuse/ica_fuse_batch_files/input_data_fusion_1.m
d. ica_fuse/ica_fuse_batch_files/input_data_fusion_2.m
e. ica_fuse/ica_fuse_parallelICA/ica_fuse_select_parallelICA_data.m
f. ica_fuse/ica_fuse_parallelICA/ica_fuse_parallelICA_batch_files/input_
data_paraica_fusion_1.m
g. ica_fuse/ica_fuse_utilities/ica_fuse_ui_select_data.m
FITv2.0b Updates (April 27, 2010):
1. Added dimensionality estimation code by Leo Li (Y. Li, T. Adali and V. D. Cal
houn, "Estimating the number of independent components for fMRI data",
HBM, vol. 28, pp. 1251- 1266, 2007). Dimensionality estimation code is done for
each feature separately and the no. of estimated components is shown to the user
.
The following files are modified:
a. ica_fuse/ica_fuse_define_parameters.m
b. ica_fuse/ica_fuse_estim_dim.m
2. Added option for doing CCA with joint ICA (J. Sui, T. Adali, G. Pearlson, H.
Yang, S. Sponheim, T. White, V. D. Calhoun, "A CCA+ICA Based Model for Multi-Tas
k Brain Imaging Data Fusion
And Its Application to Schizophrenia", Neuroimage, 51(5): pp. 123-134, 2010). Th
e following files are modified:
a. ica_fuse/CCA_ICA_fusion.fig
b. ica_fuse/CCA_ICA_fusion.m
c. ica_fuse/ica_fuse_define_parameters_cca_ica.m
d. ica_fuse/ica_fuse_dataSelection.m
e. ica_fuse/ica_fuse_setup_analysis.m
f. ica_fuse/ica_fuse_setup_analysis_cca_ica.m
g. ica_fuse/ica_fuse_analysis/ica_fuse_backReconstruct.m
h. ica_fuse/ica_fuse_analysis/ica_fuse_calculateICA.m
i. ica_fuse/ica_fuse_analysis/ica_fuse_dataReduction.m
j. ica_fuse/ica_fuse_analysis/ica_fuse_scaleComponents.m
k. ica_fuse/ica_fuse_analysis/ica_fuse_run_analysis.m
l. ica_fuse/ica_fuse_display/ica_fuse_display.m
m. ica_fuse/ica_fuse_display/ica_fuse_display_features.m
n. ica_fuse/ica_fuse_display/ica_fuse_sort_components.m
o. ica_fuse/ica_fuse_display/ica_fuse_plotICALoading.m
p. ica_fuse/ica_fuse_input_output/ica_fuse_write_feature_data.m
q. ica_fuse/ica_fuse_parallelICA/ica_fuse_define_parameters_paraICA.m
r. ica_fuse/ica_fuse_parallelICA/ica_fuse_setup_parallelICA.m
s. ica_fuse/ica_fuse_utilities/ica_fuse_prepare_data.m
t. ica_fuse/ica_fuse_utilities/ica_fuse_selectEntry.m
FITv2.0b Updates (Feb 02, 2010):
Fixed bug in the following files:
1. Lower case string comparison is used for checking fmri modality instead of ex
act case in ica_fuse/ica_fuse_analysis/ica_fuse_createMask.m file.
2. deblank statement is used to remove trailing blanks instead of squeeze statem
ent in ica_fuse/ica_fuse_display/ica_fuse_create_movie_erp_fmri.m file.

FITv2.0b Updates (October 28, 2009):

1. Added an option to compute talairach coordinates of the given image.
FITv2.0b Updates (May 14, 2009):
1. PCA analysis code is modified. The following are the changes:
a. Added functions ica_fuse_remove_mean and ica_fuse_cov in ica_fuse/ica
_fuse_analysis directory.
b. Fixed the output argument "Lambda_orig" in ica_fuse/ica_fuse_analysis
/ica_fuse_v_pca.m to return all the rows
instead of only a subset of rows. This was mentioned by Jean Liu.
2. Added an option in run analysis to resume joint ICA analysis if it was interr
upted. This feature works in FITv2.0b only.
The following are the changes:
a. Modified ica_fuse/ica_fuse_setup_analysis.m file
b. Modified ica_fuse/ica_fuse_analysis/ica_fuse_run_analysis.m file.
c. Added functions ica_fuse_copyfields_to_run.m, ica_fuse_check_analysis
.m and ica_fuse_compute_new_dims.m
to copy fields from setup analysis to run analysis fields in ica_fuse/
ica_fuse_utilities directory.
d. Normalization parameter is not passed in ica_fuse/ica_fuse_display/ic
a_fuse_sort_components.m and
ica_fuse/ica_fuse_utilities/ica_fuse_calculate_histogram.m.
3. ica_fuse/ica_fuse_utilities/ica_fuse_rank_features.m file is fixed to display
the XTickLabel property
properly in the bar graph of optimal features utility when all the features are
not stacked.
FITv2.0b Updates (March 23, 2009):
1. Fixed file ica_fuse/ica_fuse_parallelICA/ica_fuse_leave_one_out.m to remove t
he function call to ica_fuse_getFeatureData.m.