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TRENDS in Biotechnology
Vol.25 No.5
0167-7799/$ see front matter 2007 Elsevier Ltd. All rights reserved. doi:10.1016/j.tibtech.2007.03.002
232
Review
Condition promiscuity
Both condition promiscuity and substrate promiscuity
have been explored and used in enzyme-catalyzed synthesis. There are thousands of examples of these, such
as reactions performed in organic solvents, in absence of
solvents, at high temperature, or at extreme pH. The
Substrate promiscuity
As mentioned above, substrate promiscuity has been
frequently exploited in the past. Here, we will mention
examples of enzymes with strict substrate specificity, which
can be destroyed by simple point mutations, and enzymes
with an intrinsic high substrate promiscuity, which can be
Type of promiscuity
Condition
Substrate
Refs
Catalytic
Accidental
Induced
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
x
[1]
[2]
[3]
[4]
[15]
[17]
[19]
[20]
[21]
[24]
[26]
[2729]
[31]
[32]
x
x
[3334]
[35]
[36]
[37]
[38]
[39]
[40]
[45]
[46]
[4751]
x
x
x
x
Review
TRENDS in Biotechnology
Vol.25 No.5
233
Catalytic promiscuity
Enzyme catalytic promiscuity refers to the ability of an
enzyme active site to catalyze more than one different
chemical transformation. Kazlauskas proposes that transformations are different if the types of bonds cleaved and/or
made are different, and if the transition states of the two
reactions are different [25]. A detailed mechanistic insight
can be used to predict promiscuous reactions in an existing
enzyme active site. One challenge in current enzyme redesign is to turn a low promiscuous activity of an enzyme into
the main activity or to use part of the existing mechanism
and divert the reaction path to new products. We will
discuss a few such examples in this section.
Catalytic promiscuity and enzyme evolution
The enzymes mandelate racemase, muconate lactonizing
enzyme and enolase share a common partial reaction,
namely the Mg2+-assisted a-proton abstraction and enolization of carboxylic acids (Figure 1). The enol intermediate
subsequently reacts differently in each enzyme to produce
their specific products [14]. The enzymes show a similar bidomain structure in which the active site has a conserved
location. With these common features it is easy to accept
the hypothesis that these enzymes have evolved by divergent evolution from a common progenitor. In some cases,
the evolution has not only changed the substrate specificity
but also the reaction specificity. Gerlt et al. found
one member of the enolase super-family that had a promiscuous activity as a N-acylamino acid racemase, with
a kcat/KM equal to 590 M1s1 for the best substrate,
N-acetylmethionine, compared with 2 105 M1s1 for
the natural reaction as o-succinylbenzoate synthase. The
discovery of enzymes with dual activity indicates that at
least some keep their original activity at the same time as
new activities start to develop, resulting in an enzyme
showing natural catalytic promiscuity [26].
Markovnikov additions catalyzed by a hydrolase
accidental catalytic promiscuity
The Markovnikov addition is an important reaction in
synthetic chemistry. Wu et al. have demonstrated the
promiscuous addition of nitrogen-containing heterocycles
to vinyl esters, catalyzed by the enzymes D-aminoacylase
[27], penicillin G acylase [28] and acylase from Aspergillus
oryzae [29] in an organic solvent. Several different
N-heterocyclic compounds were used, including purines
and pyrimidines, and several reactions reached close to
a quantitative yield. No product was observed when using
vinyl ethers. This suggests that the carbonyl in the substrate is needed, and the authors propose that its oxygen
is bound in an oxyanion hole or, alternatively, coordinated
234
Review
Figure 2. In serine hydrolases, the carbonyl of the substrate ester is coordinated in the oxyanion hole and attacked by the active site serine (a). Mutation of the active site
serine opens up the possibility for other reaction types that depend on polarization of the carbonyl function, such as aldol addition (b) or Michael type additions (c). The
oxyanion hole of Candida antarctica lipase B can form three hydrogen bonds to the oxygen of the substrate in the transition state, whereas, in ground state, only two would
be developed.
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Review
TRENDS in Biotechnology
Vol.25 No.5
235
Figure 3. The first part of the reaction mechanism of pyridoxal-phosphate (PLP)-dependent enzymes. The mechanism then diverges, depending on the type of enzyme.
Figure 4. The retro-aldol reaction specificity of l-threonine aldolase was engineered into alanine racemase by a single-point active-site mutation [46]. Abbreviation: PLP,
pyridoxal-phosphate.
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236
Review
Figure 5. Induced catalytic promiscuity. Glycosidases were transformed into glycosynthases, thioglycoligases or thioglycosynthases by rerouting reaction intermediates
achieved by deletion of catalytic amino acid side chains. The different mutations are shown in bold.
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TRENDS in Biotechnology
Vol.25 No.5
237
Acknowledgements
This work was supported by the Swedish Research Council.
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