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Plant Physiol. Biochem.

38 (2000) 647−655
© 2000 Éditions scientifiques et médicales Elsevier SAS. All rights reserved
S0981942800011785/REV

Review
Plant programmed cell death: A common way to die
Antoine Danon, Valérie Delorme, Nathalie Mailhac, Patrick Gallois*

Laboratoire génome et développement des plantes, université de Perpignan (CNRS, UMR 5096), 52, avenue de Villeneuve,
66860 Perpignan cedex, France

Received 2 February 2000; accepted 7 June 2000

Abstract – In the last few years programmed cell death in plants inspired many studies in development and environmental
stresses. Some of these studies showed that hallmarks of animal programmed cell death were found at cellular or molecular level
in plant cells in different experimental systems. Additionally the effect of over-expression in plants of animal genes implicated
in programmed cell death has been tested, and some plant homologues of these genes have been found. This suggests that,
despite some differences, plants and animals could share at least some common components of a core mechanism used to carry
out programmed cell death in eukaryotes. In this review, we will concentrate on the last findings that suggest similarity between
plant programmed cell death and its better known counterpart in animals. © 2000 Éditions scientifiques et médicales Elsevier
SAS

apoptosis / caspases / DNA ladder / necrosis / plants / programmed cell death / TUNEL

bp, base pair / HR, hypersensitive reaction / PCD, programmed cell death / PARP, poly (ADP-ribose) polymerase /
TUNEL, terminal deoxynucleotidyl transferase-mediated dUTP nick end labelling

1. INTRODUCTION of the processes of development and defence mecha-


nisms. For example lesion-mimic mutants, where a
localised cell death is triggered due to a genetic defect,
In animal development, a genetically controlled cell are a good illustration of the concept. Several studies
death, termed programmed cell death (PCD), occurs at of plant cell death have been carried out to elucidate
different stages of growth, for example to eliminate the underlying molecular mechanism. Either of two
cells between developing digits or degeneration of strategies has been used. First, molecular data can be
neurones that fail to form proper cellular connections. obtained using mutant studies or classical screening
Some cells also die during the organism’s life cycle to approaches. Second, it is tempting to draw a parallel
regulate the size of distinct cell population in tissues. between plant and animal cell death, so researchers
Additionally when cells are confronted with environ- looked for the hallmarks currently used in animal
mental stresses, they can either be destroyed acciden- studies to discriminate between programmed and acci-
tally (murder), or can self-destruct using an active dental cell death, and for plant homologues of animal
mechanism (suicide). This depends on the stress type genes implicated in programmed cell death.
or intensity. Inappropriate programmed cell death is
implicated in several human diseases such as Alzhe- The involvement of cell death in different aspects of
imer’s, Parkinson’s, AIDS or cancers (reviewed in the plant life cycle has already been reviewed [38],
[49]). including the death response to plant pathogen attack
and its specific signalling (e.g. salicylic acid, reactive
In plants, it has been known for some time that a
oxygen species, etc.) [30, 39]. Identifying ancestral
genetically controlled cell death plays a role in some
components in plant PCD is crucial to fully understand
this process. Therefore in this paper, we will concen-
trate on reporting the latest findings concerning the
similarities between plant cell death and animal PCD.
* Correspondence and reprints: fax +33 4 6866 8499; This will show that in plants the research in the field of
e-mail gallois@univ-perp.fr PCD is at a turning point.
648 A. Danon et al. / Plant. Physiol. Biochem. 38 (2000) 647–655

2. APOPTOSIS AND PROGRAMMED CELL begins with the release of different factors from
DEATH IN ANIMALS mitochondria (cytochrome c, APAF-1, AIF), which
activate a family of proteases. All the members of this
Apoptosis was originally defined in 1972, on the protease family possess a cysteine in their catalytic site
basis of specific morphological changes occurring and cleave specifically after an aspartic acid residue,
during a genetically controlled cell death initiated by a hence the classification of these proteases under the
variety of environmental stimuli [24]. These cytologi- common name of caspases (cysteine dependent aspar-
cal criteria were first described to discriminate a form tate specific proteases) [46]. Some of these caspases
of cell suicide from an accidental cell death termed are executioners of apoptosis and cleave several pro-
necrosis. In short, apoptosis begins with cell shrinkage teins important for cell integrity (e.g. poly (ADP-
and chromatin condensation. Then, fragmentation of ribose) polymerase (PARP), lamins, gelsolin, etc.).
the nucleus and ultimately of the entire cell occurs, Destruction of these key substrates leads to the mor-
giving apoptotic bodies (nucleus fragments surrounded phological changes described earlier and to cell death.
by cell material and included in plasma membrane In particular, the protein inhibitor (ICAD) of the
fragments), which are then phagocytosed. This mor- caspase-activated DNAse (CAD) is cleaved, and CAD
phological pattern in death constitutes a set of hall- activation specifically causes the internucleosomal
marks used to recognise apoptotic cells from others at cleavage of genomic DNA typically found in apoptosis
a cytological level. [12].
It is only years later that some knowledge at the
molecular level was acquired. Each newly discovered
step was successively incorporated in a cell suicide
pathway under the name of programmed cell death 3. ANIMAL HALLMARKS OF APOPTOSIS
(PCD). This term implies the activation of a genome- AND PCD DETECTED IN PLANT CELL
encoded biochemical pathway, leading in most cases DEATH
to the apoptotic morphological changes. The first
major molecular event described was a specific pattern
of genomic DNA cleavage, resulting in a DNA ladder In animal biology, the terms apoptosis and PCD
detected using electrophoresis in agarose gel. Typi- have variable meanings depending on the researchers
cally the ladder ‘rungs’ are multiples of 180 bp, due to [48, 49]. We have chosen in this paper to use strict
internucleosomal excision of chromatin fragments by definitions as proposed in Vaux and Korsmeyer [48,
an endonuclease [56]. The detection of this DNA 49]. We restrict apoptosis to the morphological phe-
ladder is still currently used to distinguish at the notype observed in some forms of animal PCD.
molecular level apoptosis from necrosis. In the latter, Although we know that for some researchers PCD
genomic DNA degradation occurs randomly and results means developmental cell death, we restrict PCD to
in a smear detected when the DNA is separated on cell death for which a genome-encoded biochemical
agarose gel [23]. Alternatively, digested DNA in nuclei pathway has been shown to lead to cell demise and this
can be detected using an in situ method called terminal independently of the morphology of the dying cell. It
deoxynucleotidyl transferase-mediated dUTP nick end should be noted that the term physiological cell death
labelling reaction (TUNEL), which detects free 3’-OH has also been proposed to rationalise the study of cell
DNA breaks [16]. death [48, 49]. It applies when a particular cell death is
The first apoptotic gene (BCL-2) was discovered at not (yet) attributed to either apoptosis or PCD. Physi-
the beginning of the nineties and was shown to be a ological cell death can be cell-autonomous or non-cell-
suppressor of apoptosis [19]. Other genes of the BCL-2 autonomous [48, 49] (figure 1). As an example, the
family were subsequently found on the basis of sequence elimination of suspensor cells has often been described
similarities and physical interactions. This gene family as a PCD event, part of embryo development. But to
is now composed of members suppressing apoptosis date, there is no description of genome-encoded bio-
(BCL-2, BCL-xL, MCL-1) or activating members (BAX, chemical pathway or of specific PCD or apoptosis
BAK, BAD, BCL-xS) [40]. The best-described involve- hallmarks. It could therefore be referred to as a case of
ment of the bcl-2 protein family is at the mitochondrial physiological cell death.
membrane level. There, positive and negative regula- One current question in the study of PCD in plants
tors determine whether an irreversible molecular cas- is to what extent hallmarks of apoptosis and of animal
cade ending in apoptosis is initiated [18]. This phase PCD can be found.
A. Danon et al. / Plant. Physiol. Biochem. 38 (2000) 647–655 649

pathway might involve autolysis. So, if using a strict


morphological definition, the term of apoptotic-like
phenomenon in plants should be used instead of
apoptosis since some of the terminal hallmarks of
animal apoptosis are absent.

3.2. Animal hallmarks of PCD in plants


Here we specifically summarise findings that sug-
gest the existence of animal PCD hallmarks in plants.
In addition to the often described DNA ladder, there is
other molecular evidence, definitive or not, that points
to a conservation of at least some steps of the animal
core mechanism of PCD.

Figure 1. Schematic representation of the different possible pathways 3.2.1. The DNA ladder
and hallmarks associated with cell death, as defined in animals.
(——), Active process; (- - -), passive process.
The easiest animal PCD hallmark that can be
investigated in a plant system is the DNA ladder. In
animals, it is a very specific hallmark of PCD, whereas
in necrosis, DNA degradation is random and results in
3.1. Cell and nucleus morphology during plant a smear. It should be noted that the absence of a DNA
PCD: an apoptotic-like phenomenon ladder does not rule out PCD since in some instances
In the last few years and due to the new interest in of PCD, cleavage of the genomic DNA in 50-kb
a possible apoptotic-like phenomenon existing in plants, fragments has been reported [31]. Detection of a smear
morphological changes have been investigated during of DNA fragments however rules out PCD and implies
plant PCD. Only some are similar to those reported in a passive death. In plants, DNA ladders have been
animal apoptosis. Condensation and shrinkage of the reported in different situations during development:
cytoplasm and nucleus have been described in carrot death of monocot aleurone layer [53] and endosperm
cell culture, after cell death induced by heat shock [62], senescence of petal, carpel tissue and leaves [36,
[28]. Fragmentation of the nucleus coupled with posi- 37, 61] or during anther development [52]. It has also
tive TUNEL labelling has been reported in cell death been reported after induction of death using different
induced by a pathogen toxin or UV-C radiation [7, 51]. stresses such as: cold [25], nutrient deprivation [5],
In the latter case, the pattern of nucleus fragmentation salt or D-mannose stresses [21, 43], UV radiation [7]
has been proposed to be divided into three classes. and during death induced by pathogens or a pathogen
DNA fragmentation happens in morphologically nor- toxin [33, 41, 51]. A recent paper brings a word of
mal nuclei (round shaped), in crescent shaped and in caution, pointing out that improper DNA extraction
fragmented nuclei. In parallel, a gradient of chlorophyl conditions may lead to artefactual DNA laddering
content was observed, going from high in cells with [13].
intact nuclei to non-detectable in cells with fragmented DNA fragmentation corresponding to the DNA
nuclei [7]. Whether this reflects a time course has not ladder can be detected in situ using the TUNEL
been proven. Crescent shaped nuclei have also been reaction, which labels the free 3’-OH DNA extremi-
described during cell death induced by TMV, using ties. The TUNEL reaction is considered as a good
electronic microscopy [31]. Further studies will pos- specific criterion of death by PCD in animals. It should
sibly validate the presence of crescent shaped nuclei as be noted that in plant studies, high temperature treat-
a cytological marker of PCD in plants. ments of suspension cells have been reported to induce
At the very end of animal apoptosis, apoptotic necrosis and that the necrotic cells are TUNEL posi-
bodies are formed and phagocytosed. Morphologically tive [28]. This could be explained by the fact that
similar apoptotic bodies have not been shown to form random DNA digestion occurs at the end of the
during plant cell death. These bodies may be absent in necrotic process. Moreover authors using plant tissue
plant PCD because they are functionally irrelevant due have reported that sample preparation including fixa-
to the absence of possible phagocytosis by adjacent tion, embedding and sectioning, can cause sufficient
cells in the presence of a cell wall. Instead the plant nicking of nuclear DNA to produce false TUNEL
650 A. Danon et al. / Plant. Physiol. Biochem. 38 (2000) 647–655

positive nuclei [51, 55]. Nevertheless the TUNEL described in cucumber cotyledon undergoing pro-
reaction protocols have now been adapted to plant grammed cell death [4]. A release of cytochrome c in
cells to eliminate artefacts thus allowing the detection the cytosol after a D-mannose or a menadione lethal
of nuclei with fragmented DNA that occurred in vivo treatment has also been shown [43, 45]. Using an in
[51]. Additionally the fixation protocol is simpler vitro system containing tobacco cytosol extract and
when using a protoplast or cell culture population and mouse nuclei, fragmentation of DNA could not be
has not been reported to induce false TUNEL positive induced by adding menadione in the absence of
labelling. So on the whole the TUNEL reaction is more mitochondria but adding exogenous cytochrome c did
specific to PCD when associated with time course induce it [45]. This strongly suggests a conservation of
data, than other death markers such as fluorescein the role of cytochrome c in plant PCD. However, a
diacetate (FDA) or Evan’s Blue. The latter two label definite proof would be an induction of PCD following
any dying cell without specificity with regards to a cytochrome c injection in a plant cell.
apoptosis or necrosis and results should be interpreted
carefully. In conclusion, to use TUNEL labelling or a 3.2.4. Caspase-like activities in plants
cell death marker as a marker of PCD in a particular Up till now, the caspase family in animals is
plant system, it is prudent to back up the results, at composed of twelve different proteases classified in
least initially, with the detection of a genomic DNA three phylogenetic groups: ICE, ICH1 and CPP32. All
ladder or of other typical biochemical markers (see these caspases have in common a highly conserved
below). catalytic site, a stringent substrate specificity to cleave
after an aspartic acid residue and a requirement for at
3.2.2. Early PCD hallmarks least four amino acids N terminal to the cleavage site
In animals, one of the earliest events that occurs [15]. It is possible to classify these caspases on the
after PCD induction is the loss of cell membrane basis of their affinity for different substrates including
asymmetry. This is made visible by the translocation two tetrapeptides in particular: DEVD (ICH1 and
of phosphatidylserine on the cell outer membrane. It CPP32) and YVAD (ICE caspase). The different affini-
can be measured using Annexin V, which binds pref- ties can be measured using fluorogenic or colorimetric
erentially to negatively charged phospholipids. When peptide substrates. Corresponding caspase activity can
death was induced by camptothecin using either tobacco be blocked with the same peptide substrates coupled
or human cells in a similar experiment, Annexin V with an aldehyde (CHO: reversible inhibitor) or a
binding to the outer membrane could be detected [35]. methylketone radical (CMK, FMK: irreversible inhibi-
This detection of Annexin V before DNA break tor). Recently in plants, caspase-like activities have
detection using the TUNEL reaction suggests a com- been measured during hypersensitive reaction (HR)
mon phenomenon in animal and plant cell death. cell death [9]. The results show induction of a
Another early specific feature of animal PCD is YVADase activity, whereas no DEVDase activity was
chromatin condensation [54]. This has also been detected. Surprisingly both inhibitor peptides (DEVD
detected by flow cytometry during camptothecin- and YVAD) were efficient in blocking the HR and the
induced death in tobacco before DNA fragmentation, YVADase activity. Encouragingly, none of the classi-
in a manner closely related to that which occurs in cal protease inhibitors could suppress the HR or the
mammalian cells [34]. YVADase activity. Different results were found during
the plant response to UV-C radiation, where both
caspase inhibitors can prevent DNA digestion detected
3.2.3. Clues which implicate cytochrome c by TUNEL reaction, and where a UV-C inducible
In animal cells, inactive caspases are present in the DEVDase activity, but no YVADase activity, was
absence of cell death induction. In a well-characterised found (Danon and Gallois, unpubl.).
example, it is only after an apoptotic stimulus that a
first caspase (caspase 9) is activated by factors released 3.2.5. Cleavage of the poly(ADP-ribose)
from mitochondria (cytochrome c, APAF-1, AIF). This polymerase (PARP)
activated caspase is the starting point of an activation Another feature of animal PCD is the cleavage of
cascade of other caspase family members [18]. Thus, key proteins by caspases. PARP is among the first
release of cytochrome c from intact mitochondria is target proteins shown to be specifically cleaved by
another feature of PCD in animals. A specific release caspases [27]. PARP is believed to be involved in the
of cytochrome c from intact mitochondria has been regulation of repair of DNA strand breaks and in cell
A. Danon et al. / Plant. Physiol. Biochem. 38 (2000) 647–655 651

recovery from DNA damage [8]. Even if the role of the was over-expressed in tobacco plants [29]. Bcl-XL
early PARP cleavage in animal PCD is not established, expression confers a protection against UV or paraquat-
it has been proposed that the products of this cleavage induced cell death. It disturbs the HR cell death in
could contribute to the process of self-destruction of pathogen-infected leaves and thereby allows spread of
the cell [11]. In soybean cell culture, it has been the pathogen. Similar disturbance of the HR is also
recently reported that PARP inhibitors or PARP over- observed by over-expressing Ced-9, the C. elegans
expression could respectively inhibit or activate the homologue of Bcl-XL. This indicates that animal
rate of cell death induced by H2O2, depending on the suppressors can function in inhibiting cell death in
intensity of the death stimulus [3]. Despite the fact that plants.
the authors have not reported a DNA ladder, these Bax-Inhibitor I (BI-1) is a new animal suppressor
results could indicate that, as in animals, the PARP and has plant homologues. BI-1 is able to suppress cell
protein could also participate in the death mechanism death induced by BAX over-expression in both yeast
in the event of irreparable DNA damage [11]. Addi- and animal cells [59]. An Arabidopsis homologue,
tionally, it has been reported that a 116-kDa protein AtBI-1, was identified from the genome sequencing
reacting with a PARP antibody is cleaved into a project. The identity level initially reported is low
84-kDa fragment during menadione induced PCD in (29 %) due to inaccurate computer prediction of puta-
tobacco protoplasts [45]. This cleavage could be sup- tive exons in this particular gene. Once this is taken
pressed using caspase activity inhibitors. This is simi- into account, the identity level reaches 37.5 % (N.
lar to the cleavage of PARP described in animal Mailhac, unpubl.). Nevertheless, a death suppressor
apoptotic cells. function of the plant homologue remains to be estab-
lished in plant cells.
Plant homologues of the Defender against Apoptotic
4. PLANT HOMOLOGUES OF ANIMAL Death 1 (DAD1) gene have been reported. DAD1 has
GENES IMPLICATED IN APOPTOSIS been discovered in hamster cells where the corre-
sponding mutant cell line dies via apoptosis [32]. The
In animals, different kinds of genes have been found suppressor function of this protein was further sug-
as either inducing (BAX, caspases) or inhibiting (BCL-2) gested in Caenorhabditis elegans, where its over-
programmed cell death [40]. Up till now cloning of expression protects some of the cells destined to die by
plant homologues of such key animal gene families apoptosis during development [44]. At least two A.
has not been reported. Recently a functional test has thaliana homologues have been found, and the trans-
been carried out expressing the murine BAX gene in formation of the mutant hamster cell line with one of
tobacco. This induces a cell death with HR hallmarks them, demonstrates that the function of the protein is
[26]. PCD hallmarks have however not been reported. conserved between plants and animals [14]. Other
It should be noted that the same type of results were experiments have shown that DAD1 is a subunit of the
found in yeast [59], but surprisingly in this case, the mammalian oligosaccharyltransferase complex [22].
sequence of the whole genome did not reveal any In mice, over-expression of DAD1 does not have any
putative BAX homologues. The lethal effect of the protecting function against apoptosis but affects cell
expression in plants of the animal BAX protein could cycle [20]. All these results together make the role of
be simply due to its ability to make pores in the this gene in animal apoptosis unclear, whereas its
mitochondrial membrane and may not involve any putative suppressor role in plants is still not estab-
regulatory function. So far the lethal over-expression lished.
of an animal BAX gene is therefore not sufficient to A. thaliana NADPH oxidoreductases are homolo-
prove that a homologue exists in plants. Antibodies gous to PIG3 (P53 Induced Gene). It has been recently
against human BCL-2 can detect an epitope in tobacco demonstrated that PIG3 is tightly correlated with
extracts using western blot analysis. Additionally immu- p53-mediated apoptosis in cancer cells [50]. No such
nocytochemical studies suggested a localisation in function has yet been assigned to the plant homo-
mitochondria, plastids and nuclear membranes as it logues.
could be expected from animal data [10]. Neverthe- Aside from whole gene similarity, database searches
less, the question of the existence of a BCL-2 homo- have identified several motifs of similarities between
logue in plants remains to be established, since cloning CED-4 and APAF-1, which regulates cell death in
of the corresponding sequence has not yet been reported. animal, and proteins encoded by resistance genes
Recently, a mammalian suppressor of PCD, Bcl-XL, regulating HR in plants. The conserved domain has
652 A. Danon et al. / Plant. Physiol. Biochem. 38 (2000) 647–655

been coined NB-ARC [47]. This interesting homology


awaits further experiments to shed light on its physi-
ological significance.

5. CONCLUSION

The emerging picture is that, despite differences, a


degree of conservation exists between plants and
animals in the PCD process. The case of cell death
induced by HR against pathogen attack is an illustra-
tion of the fact that some components of animal PCD
are also relevant to plant PCD. The HR process
includes the induction of the death of a few cells
limited to the infection site. Lesion-mimic mutants for
which a similar localised cell death is triggered vali- Figure 2. Chosen examples of treatments triggering different animal
or plant PCD hallmarks in plant cell. Question marks indicate events
date the concept of a genetically controlled cell death that have been shown in animals and have not been detected in plants.
in plants (reviewed in [30, 39]). Interestingly, some
animal PCD hallmarks, such as DNA ladder or caspase-
like activities, have also been described after HR
induction [9, 33, 41, 51]. DEVDase and YVADase in plants. Cloning of the
Figure 2 shows the specific apoptotic and PCD enzymes corresponding to these activities will show
hallmarks defined in animals that have also been whether their sequences present similarities with cys-
described in plants. One of the simplest hallmarks teine proteases making them true caspases.
found in many situations in plants is the DNA ladder. Some of the specific morphological changes of
When demonstrated in a specific aspect of the plant animal apoptosis occur in plants [7, 31, 51], but
life cycle, this feature implies the occurrence of a apoptosis has been defined using cytological criteria
controlled cell death. This is because a DNA ladder is that include cell fragmentation and phagocytosis of the
the product of chromatin digestion by nuclease(s), remaining apoptotic bodies [24]. The fact that these
without concurrent protease activities (no histone diges- two criteria have not been described in plants makes
tion). Concurrent nuclease and protease activity would the term apoptosis unsuitable to qualify plant PCD at
result in the appearance of a DNA smear on agarose the morphological level, so the term apoptotic-like
gel [57]. Therefore, a DNA ladder suggests that cell should be used. It would be of interest to demonstrate
structures, such as vacuoles or lysosomes, are pre- whether nuclear fragmentation is or not the last nucleus
served at least during part of the cell death process. stage during the time course of nuclear morphological
Even if some cloned cysteine proteases have been changes occurring in plant PCD. It would also be very
described as potentially playing a role in a PCD interesting to know how plants dispose of the cell
response in plants [42, 58], no caspase homologues corpse, this being one of the expected differences
have yet been reported in plants. As mentioned earlier, between plants (no phagocytosis due to presence of a
animal caspases are characterised by both a very cell wall) and animals.
conserved catalytic site and an affinity for specific An evolutionary point of view can also be used to
target sequences such as DEVD or YVAD. It has been support the idea of some conservation of PCD molecu-
possible to measure the corresponding DEVDase and lar mechanisms between the plant and animal king-
YVADase activities recently in plants, and to specifi- doms. We know that in animals the mitochondrion is a
cally inhibit them. Moreover DEVDase and YVADase key organelle from where PCD execution is triggered.
inhibitions both have a physiological effect on HR and The ancestor of the mitochondria is thought to be an
UV-C response by inhibiting PCD ([9]; Danon and α-proteobacterium that has been captured by a proto-
Gallois, unpubl.). DEVDase and YVADase activities eukaryotic host [17]. A hypothesis concerning the
have not been detected together in the same PCD central role of mitochondria in PCD execution is that
response (YVADase in HR and DEVDase after UV the molecular regulation of self-destruction derives
radiation), suggesting at least two different pathways from a prokaryotic defence mechanism present in the
for PCD in plant cells. These results suggest a role for ancestor of mitochondria [1]. In this context, it has
A. Danon et al. / Plant. Physiol. Biochem. 38 (2000) 647–655 653

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grant. We thank Dr Michel Delseny director of the [13] Fath A., Bethke P.C., Jones R.L., Barley aleurone cell
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