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Introductory article
Article Contents
. Introduction . Why Study the Zebrafish? . Genetic Analysis of Zebrafish Development . Summary
Introduction
In the last twenty years, the tropical freshwater zebrash, Danio rerio, has emerged as an excellent model of vertebrate development. Much of the pioneering work done to advance zebrash as a model system was initiated in the laboratory of Dr George Streisinger, but now laboratories all over the world use zebrash to study developmental processes. This article will describe the features of zebrash that make them particularly tractable to embryological and genetic analyses.
This period includes the rst six regular, rapid, and synchronous divisions of the embryo. At the end of the cleavage period, the developing embryo sits as a mound on top of the large yolk.
Many important processes occur during the blastula period. Prior to this period, the embryo has utilized proteins and RNA that the mother deposited in the egg. During midblastula stages, the embryo begins to transcribe its own genes. Not only does transcription begin, but embryonic genes are regionally expressed, reecting the fact that blastomeres are now becoming dierent from one another. When embryonic transcription begins, cell division times gradually lengthen, so that blastomeres no longer divide together. Another major event that begins during the blastula period is epiboly, which describes the thinning and spreading of the cellular blastodisc over the yolk. Near the end of this period, the blastomeres are referred to collectively as the blastoderm, a sheet-like array of cells that sits like a cap on top of the large yolk.
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Figure 1 Zebrafish developmental series. Hours post-fertilization (h) are shown in the lower right of each panel. (a) Early blastula. (b) Midblastula. (c) Early gastrula. (d) Midgastrula. The arrows in (c) and (d) mark the position of the blastoderm margin and indicate the process of epiboly; epiboly is the movement of the blastoderm as it crawls over the yolk toward the vegetal pole. (e) Early segmentation stage embryo. Arrowheads in (e) mark developing somites. (f) Midsegmentation stage embryo. (g) Pharyngula. (h) Hatching embryo. The dark cells scattered over the head, body and yolk and in the eyes are pigment cells.
Gastrula period (51 4 10 h, Figure 1c,d) Epiboly continues during the gastrula period. During this period, cell movements dramatically reorganize the embryo, so that by the end of this period, three embryonic axes are clearly visible. That is, the anterior head of the embryo is clearly distinguished from the posterior tail bud, dorsal tissues are distinct from ventral ones, and medial tissues are easily discernible from lateral ones. Many embryonic genes are expressed in region-specic patterns. Cell movements during gastrulation also produce the germ layers (ectoderm, mesoderm and endoderm) of the embryo. Finally, near the end of the gastrula period, the neural plate forms; this is the rst morphological sign of central nervous system development. Segmentation period (10 24 h, Figure 1e g) The embryo elongates considerably during this period. A complete complement of about 30 bilateral somite pairs
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forms in an anterior to posterior sequence, giving the segmentation period its name. The rudiments of primary organs, such as notochord, kidney, and blood, become visible. The central nervous system undergoes dramatic changes; the neural plate forms a solid neural keel, which then hollows out to form a neural tube. Additionally, the brain becomes regionalized, with forebrain, midbrain and hindbrain subdivisions becoming distinct from one another. Finally, muscular contractions occur, and the embryo moves within the chorion. To contrast, a mouse embryo at one day after fertilization has only just completed the rst cell division to form two cells. Pharyngula period (24 48 h, Figure 1g) This period is named for the seven pharyngeal arches that rapidly form during this period. Pharyngeal arch development is common to all vertebrates, and in zebrash, pharyngeal arches later form the jaw and gills. Also during
the second day, the head straightens, ns form, pigment cells dierentiate, the circulatory system forms and the heart beats, and coordinated swimming movements begin. Embryos become responsive to touch, revealing the development of sensory-motor reexive circuits. Hatching period (48 72 h, Figure 1h) Embryos hatch from their chorions during the third day. By this time, many of the organ rudiments have formed; however, the gut and its associated organs are still developing. In addition, this period is marked by rapid development of pectoral ns, jaws and gills. During the two days after hatching (72120 h), the zebrash juvenile starts to swim and feed. The embryonic yolk, which has sustained the embryo until this time, is almost depleted. The zebrash embryo has rapidly become a small version of the adult.
fates of injected cells can be followed in living embryos by looking for uorescent cells at later times. We can use timelapse analysis to watch the movements, divisions and dierentiation of uorescently-labelled cells. In other animals that are not optically clear, one would have to serially section the embryo in order to nd labelled cells. Lineage tracing experiments have taught us a great deal about zebrash embryogenesis. When a zebrash blastomere is injected with lineage tracer dye during cleavage and blastula stages, the labelled cell and its progeny contribute later to many dierent tissues. The labelled blastomeres begin to be fate-restricted during gastrula stages. Fate restriction means that a labelled cell and its progeny will contribute to only one tissue type, demonstrating that, at the time of labelling, the cell was specied to a particular fate. By injecting single cells at the gastrula stage and following the fates of their progeny, a zebrash fate map has been constructed. This fate map is shown in Figure 2 and tells us to what tissue a cell in a particular position of the gastrula is likely to contribute. Cells located near the blastoderm margin will make mesodermal derivatives. A marginal blastomere on the dorsal side will normally make notochord, and a marginal blastomere on the ventral side will normally make blood. Cells located farther from the blastoderm margin and closer to the animal pole will contribute to epidermis and neural tissue (brain and spinal cord). When we look at the live gastrula embryo in Figure 2a, it looks deceptively simple, much like a knitted cap pulled over a large yolk cell. The fate map shows us that even though the embryo may look simple, complicated cell specication events are occurring, and many cells are already dierent from their neighbours. In fact, as shown in Figure 2c, cells in one fate map domain often express dierent genes from cells in a neighbouring fate map domain, revealing that dierential gene expression correlates well with cell fate choice.
Figure 2 Zebrafish gastrula fate map and regional gene expression. (a) Live early gastrula. (b) Schematic drawing of the fate map at a similar stage. The embryonic blastoderm is shown in red. Mesodermal fates (notochord, muscle and blood) arise near the blastoderm margin, whereas neural tissue and epidermis arise farther from the blastoderm margin. Only a subset of tissue fates is shown. AP, animal pole; VP, vegetal pole; D, dorsal; V, ventral. (Redrawn from Kimmel CB et al. (1990) Development 108: 581 594.) (c) Early gastrula embryo fixed and processed to detect expression of the floating head (flh) gene. The dorsal cells at the blastoderm margin that express flh (stained blue) are found within the notochord domain of the fate map.
Cell transplantation analyses The information from the fate map allows us to ask more sophisticated questions. We know from the gastrula fate map that cells in certain positions are fated to give rise to specic tissues. In addition, region-specic gene expression patterns are also apparent. Thus, during early gastrulation, cell fate specication is occurring; that is cells are becoming distinct from their neighbours and begin to express characteristics appropriate for their future fates. However, the fate map does not reveal whether those cells are committed to a particular fate or to express particular genes. One can only learn about cell commitment, the irreversible decision to adopt a particular fate, if a cell is challenged by moving it to a new environment. If a cell is committed, it will adopt the fate consistent with its original position, even though it is surrounded by neighbouring cells that adopt dierent fates. If a cell is not committed, it will develop like its new neighbours and adopt the fate appropriate for its new environment. In zebrash, single cells can be aspirated into a micropipette and transplanted from their original positions to ectopic positions. When a cell is transplanted during early gastrulation from one region of the fate map to another, it adopts the fate appropriate for its new location. This result shows that early gastrula cells are not committed to a particular fate. When single cells are transplanted at midgastrulation, they adopt fates appropriate for their original position. Taken together, these results show that cell fate specication begins at early gastrulation, but cell commitment (the irreversible decision to adopt a particular fate) does not begin until midgastrulation, two hours later. Below, we discuss how the powerful techniques of cell lineage analysis and cell transplantation are used to characterize the defects in developmental mutants.
Figure 3 Wild-type and spadetail (spt) mutant zebrafish embryos. (a) Wild-type and spt mutant embryos at 24 h. Arrow marks the abnormal accumulation of cells in the spt tail bud. (b) High-magnification dorsal views of wild-type and spt mutant embryos at 14 h; spt mutants have a notochord, but clearly lack somites.
It should be clear from this discussion of the spt gene that studying the defects in genetic mutants can teach us an enormous amount about normal development. Studies of spt mutant embryos demonstrate that, during gastrulation, a gene called spadetail is required intrinsically in trunk somitic precursors to ensure that they migrate to the correct position and adopt the correct fate. The rest of the article discusses in more detail how developmental mutations are found and highlights some of the interesting classes of mutations that have recently been discovered.
treated with a chemical mutagen to induce mutations in their germ line. Each mutagenized male is crossed to a wildtype female to generate F1 lines; individual sh in each F1 line carry dierent mutations inherited from their father. For simplicity, only a single mutation carried by a female F1 sh is shown to be segregating. If these mutations are recessive, no mutant phenotype will be observed since the wild-type allele will mask the eect of the mutant recessive allele. Sibling matings between F1 sh generate F2 families; in the F2 generation, about half of all sh in each family carry the same mutation. Now, crosses of F2 siblings will reveal the mutant phenotype when both the female and male parents carry the same mutant allele. If the mutation is recessive, then 25% of the F3 progeny of such a cross will display the mutant phenotype and 75% will be phenotypically normal. A variation of this traditional approach utilizes genetic trickery to generate gynogenetic haploids during the screening step. As the name implies, gynogenetic haploids
(b) Haploid screening strategy
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Figure 4 Zebrafish mutagenesis screening strategies. (a) Traditional screening strategy. (b) Haploid screening strategy. +, Wild-type allele; m, mutant allele. Red embryos represent mutant diploids (m/m) or haploids (m).
are embryos that have half the normal number of chromosomes, all of which are derived from the mother. The haploid screening strategy, illustrated in Figure 4b, reduces the time and space required for screening. How does haploid screening work? As in the traditional strategy, male parental (P) sh are treated with a chemical mutagen to induce mutations. Mutagenized males are crossed to females to generate a mutagenized F1 line. Now the procedure diverges from the traditional approach. Instead of performing sibling crosses to generate F2 families, the haploid progeny of F1 females are examined directly for mutant phenotypes. Eggs are gently expressed from F1 females and mixed with sperm that has been treated with ultraviolet irradiation to destroy its genetic material. The irradiated sperm triggers development of the egg, but does not contribute any genetic material to the developing haploid embryo. If the F1 female carries a recessive mutation that aects embryonic development, the mutant phenotype will be observed in about 50% of her haploid F2 progeny. Many embryonic structures, especially during early embryogenesis, can be observed in haploids. However, haploid embryos live for only about three days, and therefore haploid screens for mutations that aect late embryogenesis are not feasible. Additionally, development of haploid embryos is not completely normal. The haploid body is short, the brain is
abnormally sculptured, and blood circulation is abnormal. Despite these potential drawbacks, many interesting developmental mutants have been discovered using a haploid screening strategy.
Figure 5 Zebrafish mutants at one day of development. The notochord (arrowhead) and an eye (open arrowhead) are indicated on the wild-type embryo. The other eye in the wild-type embryo is in another plane of focus. See text for descriptions of mutants. The boxed inset in the lower right shows high-magnification views of wild-type (wt) and no isthmus (noi) mutant embryo heads, showing the lack of the midbrain hindbrain boundary (arrow) in no isthmus mutants.
one-eyed pinhead gene has recently been shown to encode a novel protein, illustrating that genetic screens in zebrash will uncover new developmental genes. Another example of a mutation aecting brain development is the no isthmus mutation. Embryos lacking a functional no isthmus gene lack the isthmus, a structure that demarcates the division between the midbrain and the hindbrain and later becomes the cerebellum (see Figure 5 inset). Embryos with the no isthmus mutation are more subtle than the other mutants shown in Figure 5. How might one screen easily for even more subtle defects? One way to do this is to screen directly for disruptions in gene expression patterns. Figure 6 shows wild-type and mutant embryos that were xed and processed to detect the transcripts of three genes that have nonoverlapping, region-specic expression patterns. Two of these genes are expressed in discrete regions of the midbrain and hindbrain; engrailed3 (eng3) is expressed in the midbrainhindbrain boundary, and krox20 is expressed in two hindbrain segments (3 and 5). Comparing a wild-type embryo with an embryo carrying a mutation in the valentino gene shows that valentino mutant embryos have normal krox20 expression in hindbrain segment 3, but virtually no krox20 expression in segment 5. This strongly suggests that the valentino mutation is not in the krox20 gene itself, but instead is a mutation in a gene that regulates krox20 expression specically in hindbrain segment 5. Thus, one important feature of the expression screening approach is that it allows isolation of regulatory genes that control expression of downstream genes. Another important feature is that it allows identication of genes that control subtle patterning of the embryo. Live valentino mutant embryos do have a morphologically identiable defect, but it is a subtle defect in hindbrain segmentation that can be picked out only by an experienced eye. On the other hand, even an untrained eye can sort out valentino mutant embryos from their wild-type siblings using gene expression patterns! We have discussed only a few of the hundreds of mutations that have been described that disrupt zebrash embryonic development. It is beyond the scope of this
article to review them all, and instead we briey mention the classes of mutations that aect virtually all aspects of embryonic development. These classes include mutations that disrupt gastrulation movements, establishment of the body axes, tissue and organ formation (including the notochord, blood, heart, neural crest derivatives, placodes, and central nervous system), formation of neural connections, and behaviour. Genetic screens using novel approaches will identify additional developmental genes, since it is clear that there are still many new genes to be identied and studied. By characterizing mutant phenotypes using cell lineage and transplantation analyses and by examining the genetic interactions among dierent mutations, we can begin to understand regulatory pathways that govern embryonic development.
Figure 6 Mutagenesis screening using gene expression patterns. Wildtype and valentino mutant embryos fixed at 22 h and processed to detect expression of three different genes. Comparing head views of wild-type and mutant embryos shows that engrailed3 (eng3) expression at the midbrain hindbrain boundary and krox20 expression in hindbrain segment 3 is normal in valentino mutant embryos, but krox20 expression in hindbrain segment 5 is severely diminished (*). (Photographs courtesy of Dr Cecilia B. Moens.)
the candidate gene is indeed the gene disrupted by the mutation. First, recombinational analysis should show that the candidate gene and the mutation always segregate together and are never separated by a recombinational event. Second, the gene should be expressed at the right time and place to explain the defects observed in mutant embryos. Third, sequencing of the candidate gene from mutant embryos should reveal a molecular lesion in the gene that disrupts its function. Finally, the mutant phenotype may be rescued by providing mutant embryos with a wild-type copy of the candidate gene. When these criteria are satised, one can say with condence that the candidate gene is indeed the same gene identied by mutation. To date, the zebrash genetic map has been utilized to identify the molecular nature of several genes originally identied by mutation, and the genetic map will continue to be an important tool in the future.
establishment of molecular and genetic tools such as the zebrash genetic map has allowed us to identify the molecular nature of genes known only by mutation. Together, these attributes of the zebrash allow us to dissect embryonic development at cellular, genetic and molecular levels. By combining developmental studies in zebrash with those in other vertebrate model systems, developmental biologists will begin to unravel the extraordinary events that occur as an embryo develops from a one-celled zygote to a complex, multicellular organism.
Further Reading
Development (1996) vol. 123. [Many articles in this issue contain initial phenotypic descriptions of zebrash developmental mutants found in two large-scale screens.] Driever W, Stemple D, Schier A and Solnica-Krezel L (1994) Zebrash: genetic tools for studying vertebrate development. Trends in Genetics 10: 152159. Eisen J S (1996) Zebrash make a big splash. Cell 87: 969977. Kimmel CB, Kane DA and Ho RK (1991) Lineage specication during early embryonic development of the zebrash. In: Gerhart J (ed.) Cell Cell Interactions in Early Development, pp. 203225. New York: Wiley-Liss. Kimmel CB, Ballard WW, Kimmel SR, Ullmann B and Schilling TF (1995) Stages of embryonic development of the zebrash. Developmental Dynamics 203: 253310. Postlethwait JH and Talbot WS (1997) Zebrash genomics: from mutants to genes. Trends in Genetics 13: 183190. Solnica-Krezel L, Stemple D and Driever W (1995) Transparent things}cell fates and cell movements during early embryogenesis of zebrash. BioEssays 17: 931939.
Summary
We have reviewed the features of the zebrash embryo that make it an excellent vertebrate model system. Zebrash embryos are small, virtually transparent creatures that develop rapidly and synchronously outside the mother. Cell lineage and transplantation analyses allow us to follow the behaviour of individual cells over time in both wildtype and mutant embryos. The relative ease of genetic screens in zebrash has allowed the identication of hundreds of genes that regulate embryonic development, only a few of which were described here. Finally, the