WikiGenes - ALK - anaplastic lymphoma receptor tyrosine kinase

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Hoffmann, R. A wiki for the life sciences where authorship matters. Nature Genetics (2008)

Gene Review

ALK - anaplastic lymphoma receptor tyrosine kinase Homo sapiens

Synonyms: ALK tyrosine kinase receptor, Anaplastic lymphoma kinase, CD246, NBLST3

Gascoyne, R.D. et al., Lamant, L. et al., Lai, R. et al., Touriol, C. et al., Morris, S.W. et
al., et al.

Disease relevance of ALK

Unscheduled expression of the truncated ALK may contribute to malignant transformation in these lymphomas [1]. Fusion of a kinase gene, ALK, to a nucleolar protein gene, NPM, in non-Hodgkin's lymphoma [1]. Anaplastic large cell lymphoma (ALCL) is associated with the t(2;5)(p23;q35), which generates the NPM-ALK fusion gene encoding an 80-kD protein [2]. Occasional non-ALCL B cell lymphomas (4%) with diffuse large cell and immunoblastic histology and Hodgkin's disease cases (3%) were NPM-ALK-, but these data are questionable [3]. We report a case showing a restricted cytoplasmic staining pattern of ALK and a novel chromosomal abnormality, t(2;22)(p23;q11.2), demonstrated by fluorescence in situ hybridization analysis [4]. These findings show a direct involvement of Shp2 in NPM-ALK lymphomagenesis, highlighting its critical role in lymphoma cell proliferation and migration [5]. Multiplex reverse transcription-PCR analysis of additional archival tumor specimens identified another case of lung adenocarcinoma positive for KIF5B-ALK [6]. Mucin production was frequently observed in ALK-positive adenocarcinomas (29.4%; P < 0.01) [7]. Among adenocarcinomas, without KRAS or EGFR mutations, with <10-pack-year history, 44.8% of cases were ALK positive [8].

High impact information on ALK

Fusion of a kinase gene, ALK, to a nucleolar protein gene, NPM, in non-Hodgkin's lymphoma [9]. Expressed in the small intestine, testis, and brain but not in normal lymphoid cells, ALK shows greatest sequence similarity to the insulin receptor subfamily of kinases [1]. We have identified a highly potent and selective small-molecule ALK inhibitor, NVP-TAE684, which blocked the growth of ALCL-derived and ALK-dependent cell lines with IC(50) values between 2 and 10 nM [10]. NPM/ALK, in turn, induces the phenotype through activation of its key signal transmitter, signal transducer and activator of transcription 3 (STAT3) [11]. The anaplastic lymphoma kinase (ALK) on 2p23 is a tyrosine kinase that forms chimeric fusions with numerous translocation partners [12].

Chemical compound and disease context of ALK

Anaplastic lymphoma kinase (ALK)-positive lymphomas are characterized by expression of a hybrid protein, comprising the cytoplasmic portion of the ALK tyrosine kinase fused to a partner protein [13]. As STAT3 activation is pathogenetically important in anaplastic lymphoma kinase-positive anaplastic large cell lymphoma (ALK+ ALCL), we investigated whether JSI-124 can mediate significant inhibitory effects in this cell type [14]. Antibodies detecting hypoglycosylated MUC1 were found to be absent in all lymphomas (SM3) or present in only six of 15 ALK positive ALCLs (VU-4H5) [15]. To clarify this issue and its epidemiological characteristics, we examined 37 formalin-fixed,

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WikiGenes - ALK - anaplastic lymphoma receptor tyrosine kinase

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paraffin-embedded specimens of CD30+ lymphomas from the United States and Hong Kong by reverse transcriptase-polymerase chain reaction (RT-PCR) for the status of the NPM and ALK genes, which are typically juxtaposed by the t(2;5) translocation [16]. Whilst the strong labelling for phosphotyrosine observed in the lymphoma cells is due to the presence of activated ALK, the strong staining of some normal cells presumably represents physiologically active kinases and this should be taken into account when interpreting the immunostaining of non-lymphoid tumours [17].

Biological context of ALK

These findings identify a mechanism of NPM/ALK-mediated oncogenesis based on induction of the Treg phenotype of the transformed CD4(+) T cells [11]. Flow cytometric analysis revealed that wortmannin-treated NPM-ALK-transformed cell lines underwent apoptosis [18]. All such cases result from a novel fusion created by the ALK gene on chromosome 2p23 and NPM on 5q35 or other variant translocation partners [19]. Down-regulation of Bcl-XL significantly reduced the antiapoptotic potential of NPM/ALK in both transformed murine Ba/F3 pro-B cells and human ALCL-derived KARPAS-299 cells [20]. NPM/ALK kinase activity was required to promote Bcl-XL expression and its protective effect on mitochondrial homeostasis [20].

Anatomical context of ALK

A rare variant of diffuse large B-cell lymphoma (DLBCL), originally described in 1997, was thought to overexpress full-length ALK in contrast to a chimeric protein characteristic of ALCL [19]. In agreement, Src-kinase inhibitors or pp60(c-src) siRNA significantly decreased the proliferation rate of NPM-ALK-positive ALCL cell lines [21]. The CLTCL gene is constitutively expressed in lymphoid cells and therefore presumably contributes an active promoter for the CLTCL-ALK gene [13]. Primary murine bone marrow retrovirally transduced with NPM-ALK showed a transformed phenotype that was reversible on treatment with PI 3-kinase inhibitors [18]. The distinctive granular cytoplasmic staining pattern for ALK was likely to be due to binding of the fusion protein to clathrin-coated vesicles [13].

Associations of ALK with chemical compounds

However, full-length ALK protein lacks tyrosine kinase activity and thus the mechanism of oncogenesis has remained elusive [19]. We have studied the effect of 17-allylamino,17-demethoxygeldanamycin (17-AAG), a benzoquinone ansamycin, on NPM-ALK steady-state level in ALCL cells [22]. Previously, nucleophosmin-ALK has been shown to activate phosphatidylinositol 3-kinase (PI3K) and its downstream effector, the serine/threonine kinase AKT [23]. To study the early consequences of ectopic ALK activation, a GyrB-ALK fusion was constructed that allowed regulated dimerization with the addition of coumermycin [24]. Our data support that JSI-124 is a potentially useful therapeutic agent for ALK+ ALCL [14]. Mutation of the first and second (FFY), first and third (FYF), or all three (FFF) tyrosine residues impaired both kinase activity and transforming ability of NPM/ALK [25]. Crizotinib resistance in ALK(+) NSCLC occurs through somatic kinase domain mutations, ALK gene fusion CNG, and emergence of separate oncogenic drivers [26].

Physical interactions of ALK

We describe 6 cases of ALK+ DLBCL characterized by a simple or complex t(2;17)(p23;q23) involving the clathrin gene (CLTC) at chromosome band 17q23 and the ALK gene at chromosome band 2p23 [19]. Sedimentation gradient experiments revealed that NPM-ALK forms in vivo multimeric

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WikiGenes - ALK - anaplastic lymphoma receptor tyrosine kinase

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complexes of approximately 200 kDa or greater that also contain normal NPM [27].

Enzymatic interactions of ALK

ALK is phosphorylated independently of a direct interaction of PTN with ALK [28].

Regulatory relationships of ALK

Using cDNA microarrays, ALK(+) ALCL cell lines consistently expressed the highest TIMP1 level among 29 lymphoma cell lines of various subtypes [29]. We show here that expression of activated ALK induces the constitutive phosphorylation of Stat3 in transfected cells as well as in primary human ALCLs [30]. Inhibition of JAK3 induces apoptosis and decreases anaplastic lymphoma kinase activity in anaplastic large cell lymphoma [31]. Using a cDNA microarray, we found that suppressor of cytokine signaling 3 (SOCS3) is highly expressed in anaplastic lymphoma kinase (ALK)+ anaplastic large cell lymphoma (ALCL) cell lines [32]. The present cases of ALCL associated with a novel t(1;2)(q25;p23) demonstrate that at least one fusion partner other than NPM can activate the intracytoplasmic domain of the ALK kinase [33]. The expression of ALK fusion proteins induced delocalization of PSF from the nucleus to the cytoplasm and forced overexpression of PSF-inhibited proliferation and induced apoptosis in cells expressing NPM/ALK [34]. Pharmacological inhibition of mTOR in NPM-ALK-positive cells down-regulates JunB protein levels by shifting JUNB mRNA translation from large polysomes to monosomes and ribonucleic particles (RNPs), and decreases cellular proliferation [35].

Other interactions of ALK

Moreover, these results demonstrate the presence of CLTC-ALK fusions in these tumors and extend the list of diseases associated with this genetic abnormality to include classical T-cell or null ALCL, ALK+ DLBCL, and inflammatory myofibroblastic tumors [19]. A new fusion gene TPM3-ALK in anaplastic large cell lymphoma created by a (1;2)(q25;p23) translocation [33]. Here we have identified TRK-fused gene (TFG) as a new ALK partner in 2 ALCL, 1 of which exhibited a t(2;3)(p23;q21) [2]. In conclusion, STAT3 directly contributes to the high level of TIMP1 expression in ALK(+) ALCL, and TIMP1 expression correlates with high level of STAT3 activation in ALCL [29]. Other rearrangements involving the ALK gene have recently been shown to be associated with ALCL, among which the ATIC-ALK rearrangement resulting from the inv(2)(p23q35) translocation is probably the most recurrent [36].

Analytical, diagnostic and therapeutic context of ALK

Using a polymerase chain reaction (PCR)-based technique to walk on chromosome 2 from the known ALK gene across the breakpoint, we showed that the gene involved at 1q25 is TPM3, encoding a nonmuscular tropomyosin [33]. These results were further validated in fibroblastic NIH-3T3 cells expressing a previously described chimeric epidermal growth factor receptor (EGFR)/ALK molecule that allows dissection of ALK enzymatic function under conditions of controlled ligand-induced activation [37]. Results of the RT-PCR were compared to ALK immunostaining, cytogenetics, and fluorescence in situ hybridization (FISH) results [36]. We further evaluated the relationship between TIMP1 expression and STAT3 activation in 43 ALCL tumors (19 ALK(+) and 24 ALK(-)) using immunohistochemistry and a tissue microarray [29]. Here, we show molecular cloning of cDNAs for both the human and mouse ALK proteins [38].

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References
1. Fusion of a kinase gene, ALK, to a nucleolar protein gene, NPM, in non-Hodgkin's lymphoma. Morris, S.W., Kirstein, M.N., Valentine, M.B., Dittmer, K.G., Shapiro, D.N., Saltman, D.L., Look, A.T. Science (1994) 2. TRK-fused gene (TFG) is a new partner of ALK in anaplastic large cell lymphoma producing two structurally different TFG-ALK translocations. Hernndez, L., Pinyol, M., Hernndez, S., Be, S., Pulford, K., Rosenwald, A., Lamant, L., Falini, B., Ott, G., Mason, D.Y., Delsol, G., Campo, E. Blood (1999) 3. Pathobiology of NPM-ALK and variant fusion genes in anaplastic large cell lymphoma and other lymphomas. Drexler, H.G., Gignac, S.M., von Wasielewski, R., Werner, M., Dirks, W.G. Leukemia (2000) 4. Non-muscle myosin heavy chain (MYH9): a new partner fused to ALK in anaplastic large cell lymphoma. Lamant, L., Gascoyne, R.D., Duplantier, M.M., Armstrong, F., Raghab, A., Chhanabhai, M., Rajcan-Separovic, E., Raghab, J., Delsol, G., Espinos, E. Genes Chromosomes Cancer (2003) 5. The tyrosine phosphatase Shp2 interacts with NPM-ALK and regulates anaplastic lymphoma cell growth and migration. Voena, C., Conte, C., Ambrogio, C., Boeri Erba, E., Boccalatte, F., Mohammed, S., Jensen, O.N., Palestro, G., Inghirami, G., Chiarle, R. Cancer Res. (2007) 6. KIF5B-ALK, a novel fusion oncokinase identified by an immunohistochemistry-based diagnostic system for ALK-positive lung cancer. Takeuchi, K., Choi, Y.L., Togashi, Y., Soda, M., Hatano, S., Inamura, K., Takada, S., Ueno, T., Yamashita, Y., Satoh, Y., Okumura, S., Nakagawa, K., Ishikawa, Y., Mano, H. Clin. Cancer Res. (2009) 7. EML4-ALK fusion gene assessment using metastatic lymph node samples obtained by endobronchial ultrasound-guided transbronchial needle aspiration. Sakairi, Y., Nakajima, T., Yasufuku, K., Ikebe, D., Kageyama, H., Soda, M., Takeuchi, K., Itami, M., Iizasa, T., Yoshino, I., Mano, H., Kimura, H. Clin. Cancer Res. (2010) 8. Optimizing the detection of lung cancer patients harboring anaplastic lymphoma kinase (ALK) gene rearrangements potentially suitable for ALK inhibitor treatment. Camidge, D.R., Kono, S.A., Flacco, A., Tan, A.C., Doebele, R.C., Zhou, Q., Crino, L., Franklin, W.A., Varella-Garcia, M. Clin. Cancer Res. (2010) 9. Fusion of a kinase gene, ALK, to a nucleolar protein gene, NPM, in non-Hodgkin's lymphoma. Morris, S.W., Kirstein, M.N., Valentine, M.B., Dittmer, K., Shapiro, D.N., Look, A.T., Saltman, D.L. Science (1995) 10. Identification of NVP-TAE684, a potent, selective, and efficacious inhibitor of NPM-ALK. Galkin, A.V., Melnick, J.S., Kim, S., Hood, T.L., Li, N., Li, L., Xia, G., Steensma, R., Chopiuk, G., Jiang, J., Wan, Y., Ding, P., Liu, Y., Sun, F., Schultz, P.G., Gray, N.S., Warmuth, M. Proc. Natl. Acad. Sci. U.S.A. (2007) 11. Nucleophosmin/anaplastic lymphoma kinase (NPM/ALK) oncoprotein induces the T regulatory cell phenotype by activating STAT3. Kasprzycka, M., Marzec, M., Liu, X., Zhang, Q., Wasik, M.A. Proc. Natl. Acad. Sci. U.S.A. (2006) 12. Proteomic identification of oncogenic chromosomal translocation partners encoding chimeric anaplastic lymphoma kinase fusion proteins. Elenitoba-Johnson, K.S., Crockett, D.K., Schumacher, J.A., Jenson, S.D., Coffin, C.M., Rockwood, A.L., Lim, M.S. Proc. Natl. Acad. Sci. U.S.A. (2006) 13. Further demonstration of the diversity of chromosomal changes involving 2p23 in ALK-positive lymphoma: 2 cases expressing ALK kinase fused to CLTCL (clathrin chain polypeptide-like). Touriol, C., Greenland, C., Lamant, L., Pulford, K., Bernard, F., Rousset, T., Mason, D.Y., Delsol, G. Blood (2000) 14. JSI-124 (cucurbitacin I) inhibits Janus kinase-3/signal transducer and activator of transcription-3 signalling, downregulates nucleophosmin-anaplastic lymphoma kinase (ALK), and induces apoptosis in ALK-positive anaplastic large cell lymphoma cells. Shi, X., Franko, B., Frantz, C., Amin, H.M., Lai, R. Br. J. Haematol. (2006) 15. MUC1 (EMA) is preferentially expressed by ALK positive anaplastic large cell lymphoma, in the normally glycosylated or only partly hypoglycosylated form. ten Berge, R.L., Snijdewint, F.G., von Mensdorff-Pouilly, S., Poort-Keesom, R.J., Oudejans, J.J., Meijer, J.W., Willemze, R., Hilgers, J., Meijer, C.J. J. Clin. Pathol. (2001) 16. Low frequency association of the t(2;5)(p23;q35) chromosomal translocation with CD30+ lymphomas from American and Asian patients. A reverse transcriptase-polymerase chain reaction study. Lopategui, J.R., Sun, L.H., Chan, J.K., Gaffey, M.J., Frierson, H.F., Glackin, C., Weiss, L.M. Am. J. Pathol. (1995) 17. Immunohistochemical screening for oncogenic tyrosine kinase activation. Pulford, K., Delsol, G., Roncador, G., Biddolph, S., Jones, M., Mason, D.Y. J. Pathol. (1999) 18. Nucleophosmin-anaplastic lymphoma kinase associated with anaplastic large-cell lymphoma activates the phosphatidylinositol 3-kinase/Akt antiapoptotic signaling pathway. Bai, R.Y., Ouyang, T., Miething, C., Morris, S.W., Peschel, C., Duyster, J. Blood (2000) 19. ALK-positive diffuse large B-cell lymphoma is associated with Clathrin-ALK rearrangements: report of 6 cases. Gascoyne, R.D., Lamant, L., Martin-Subero, J.I., Lestou, V.S., Harris, N.L., Mller-Hermelink, H.K., Seymour, J.F., Campbell, L.J., Horsman, D.E., Auvigne, I., Espinos, E., Siebert, R., Delsol, G. Blood (2003) 20. Bcl-XL down-regulation suppresses the tumorigenic potential of NPM/ALK in vitro and in vivo. Coluccia, A.M., Perego, S., Cleris, L., Gunby, R.H., Passoni, L., Marchesi, E., Formelli, F., Gambacorti-Passerini, C. Blood (2004) 21. Nucleophosmin-anaplastic lymphoma kinase of anaplastic large-cell lymphoma recruits,

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activates, and uses pp60c-src to mediate its mitogenicity. Cussac, D., Greenland, C., Roche, S., Bai, R.Y., Duyster, J., Morris, S.W., Delsol, G., Allouche, M., Payrastre, B. Blood (2004) 22. Nucleophosmin-anaplastic lymphoma kinase (NPM-ALK), a novel Hsp90-client tyrosine kinase: down-regulation of NPM-ALK expression and tyrosine phosphorylation in ALK(+) CD30(+) lymphoma cells by the Hsp90 antagonist 17-allylamino,17demethoxygeldanamycin. Bonvini, P., Gastaldi, T., Falini, B., Rosolen, A. Cancer Res. (2002) 23. Activation of mammalian target of rapamycin signaling pathway contributes to tumor cell survival in anaplastic lymphoma kinase-positive anaplastic large cell lymphoma. Vega, F., Medeiros, L.J., Leventaki, V., Atwell, C., Cho-Vega, J.H., Tian, L., Claret, F.X., Rassidakis, G.Z. Cancer Res. (2006) 24. The nucleophosmin-anaplastic lymphoma kinase fusion protein induces c-Myc expression in pediatric anaplastic large cell lymphomas. Raetz, E.A., Perkins, S.L., Carlson, M.A., Schooler, K.P., Carroll, W.L., Virshup, D.M. Am. J. Pathol. (2002) 25. Characterization of some molecular mechanisms governing autoactivation of the catalytic domain of the anaplastic lymphoma kinase. Tartari, C.J., Gunby, R.H., Coluccia, A.M., Sottocornola, R., Cimbro, B., Scapozza, L., Donella-Deana, A., Pinna, L.A., Gambacorti-Passerini, C. J. Biol. Chem. (2008) 26. Mechanisms of resistance to crizotinib in patients with ALK gene rearranged non-small cell lung cancer. Doebele, R.C., Pilling, A.B., Aisner, D.L., Kutateladze, T.G., Le, A.T., Weickhardt, A.J., Kondo, K.L., Linderman, D.J., Heasley, L.E., Franklin, W.A., Varella-Garcia, M., Camidge, D.R. Clin. Cancer Res. (2012) 27. Role of the nucleophosmin (NPM) portion of the non-Hodgkin's lymphoma-associated NPM-anaplastic lymphoma kinase fusion protein in oncogenesis. Bischof, D., Pulford, K., Mason, D.Y., Morris, S.W. Mol. Cell. Biol. (1997) 28. Anaplastic lymphoma kinase is activated through the pleiotrophin/receptor proteintyrosine phosphatase beta/zeta signaling pathway: an alternative mechanism of receptor tyrosine kinase activation. Perez-Pinera, P., Zhang, W., Chang, Y., Vega, J.A., Deuel, T.F. J. Biol. Chem. (2007) 29. Signal transducer and activator of transcription-3 activation contributes to high tissue inhibitor of metalloproteinase-1 expression in anaplastic lymphoma kinase-positive anaplastic large cell lymphoma. Lai, R., Rassidakis, G.Z., Medeiros, L.J., Ramdas, L., Goy, A.H., Cutler, C., Fujio, Y., Kunisada, K., Amin, H.M., Gilles, F. Am. J. Pathol. (2004) 30. Anaplastic lymphoma kinase (ALK) activates Stat3 and protects hematopoietic cells from cell death. Zamo, A., Chiarle, R., Piva, R., Howes, J., Fan, Y., Chilosi, M., Levy, D.E., Inghirami, G. Oncogene (2002) 31. Inhibition of JAK3 induces apoptosis and decreases anaplastic lymphoma kinase activity in anaplastic large cell lymphoma. Amin, H.M., Medeiros, L.J., Ma, Y., Feretzaki, M., Das, P., Leventaki, V., Rassidakis, G.Z., O'Connor, S.L., McDonnell, T.J., Lai, R. Oncogene (2003) 32. Suppressor of cytokine signaling 3 expression in anaplastic large cell lymphoma. Cho-Vega, J.H., Rassidakis, G.Z., Amin, H.M., Tsioli, P., Spurgers, K., Remache, Y.K., Vega, F., Goy, A.H., Gilles, F., Medeiros, L.J. Leukemia (2004) 33. A new fusion gene TPM3-ALK in anaplastic large cell lymphoma created by a (1;2)(q25;p23) translocation. Lamant, L., Dastugue, N., Pulford, K., Delsol, G., Mariam, B. Blood (1999) 34. NPM/ALK binds and phosphorylates the RNA/DNA-binding protein PSF in anaplastic large-cell lymphoma. Galietta, A., Gunby, R.H., Redaelli, S., Stano, P., Carniti, C., Bachi, A., Tucker, P.W., Tartari, C.J., Huang, C.J., Colombo, E., Pulford, K., Puttini, M., Piazza, R.G., Ruchatz, H., Villa, A., Donella-Deana, A., Marin, O., Perrotti, D., Gambacorti-Passerini, C. Blood (2007) 35. The oncoprotein NPM-ALK of anaplastic large-cell lymphoma induces JUNB transcription via ERK1/2 and JunB translation via mTOR signaling. Staber, P.B., Vesely, P., Haq, N., Ott, R.G., Funato, K., Bambach, I., Fuchs, C., Schauer, S., Linkesch, W., Hrzenjak, A., Dirks, W.G., Sexl, V., Bergler, H., Kadin, M.E., Sternberg, D.W., Kenner, L., Hoefler, G. Blood (2007) 36. The NPM-ALK and the ATIC-ALK fusion genes can be detected in non-neoplastic cells. Maes, B., Vanhentenrijk, V., Wlodarska, I., Cools, J., Peeters, B., Marynen, P., de Wolf-Peeters, C. Am. J. Pathol. (2001) 37. Activation of alpha-diacylglycerol kinase is critical for the mitogenic properties of anaplastic lymphoma kinase. Bacchiocchi, R., Baldanzi, G., Carbonari, D., Capomagi, C., Colombo, E., van Blitterswijk, W.J., Graziani, A., Fazioli, F. Blood (2005) 38. Molecular characterization of ALK, a receptor tyrosine kinase expressed specifically in the nervous system. Iwahara, T., Fujimoto, J., Wen, D., Cupples, R., Bucay, N., Arakawa, T., Mori, S., Ratzkin, B., Yamamoto, T. Oncogene (1997)

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