University

DATA MINING AND

MACHINE LEARNING
Decision tree using the Wine type
data set

R version 3.1.0 (2014-04-10) -- "Spring Dance"

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> library (tree)

Warning message:
package tree was built under R version 3.1.1
> library (ISLR)
> mywinetype <read.csv(url("http://uopeopleweb.com/winetype.csv"), header=TRUE)

> attach(mywinetype)
> names(mywinetype)
[1] "Class"

"Alcohol"

[4] "Ash"

"Alcalinity_of_ash"

[7] "Total_phenols"

"Malic_acid"
"Magnesium"

"Flavanoids"

[10] "Proanthocyanins"
[13] "diluted_wines"

"Nonflavanoid_phenols"

"Color_intensity"

"Hue"

"Proline"

> dim(mywinetype)
[1] 178 14
> attributes(mywinetype)
$names
[1] "Class"

"Alcohol"

[4] "Ash"

"Alcalinity_of_ash"

[7] "Total_phenols"
[10] "Proanthocyanins"
[13] "diluted_wines"

"Malic_acid"
"Magnesium"

"Flavanoids"
"Color_intensity"

"Nonflavanoid_phenols"
"Hue"

"Proline"

$class
[1] "data.frame"

$row.names
[1] 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18
[19] 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
36

[37] 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53
54
[55] 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71
72
[73] 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89
90
[91] 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106
107 108
[109] 109 110 111 112 113 114 115 116 117 118 119 120 121 122
123 124 125 126
[127] 127 128 129 130 131 132 133 134 135 136 137 138 139 140
141 142 143 144
[145] 145 146 147 148 149 150 151 152 153 154 155 156 157 158
159 160 161 162
[163] 163 164 165 166 167 168 169 170 171 172 173 174 175 176
177 178

> head(mywinetype)
Class Alcohol Malic_acid Ash Alcalinity_of_ash Magnesium
Total_phenols
1

1 14.23

1.71 2.43

15.6

127

2.80

1 13.20

1.78 2.14

11.2

100

2.65

1 13.16

2.36 2.67

18.6

101

2.80

1 14.37

1.95 2.50

16.8

113

3.85

1 13.24

2.59 2.87

21.0

118

2.80

1 14.20

1.76 2.45

15.2

112

3.27

Flavanoids Nonflavanoid_phenols Proanthocyanins Color_intensity

Hue
1

3.06

0.28

2.29

5.64 1.04

2.76

0.26

1.28

4.38 1.05

3.24

0.30

2.81

5.68 1.03

3.49

0.24

2.18

7.80 0.86

2.69

0.39

1.82

4.32 1.04

3.39

0.34

1.97

6.75 1.05

diluted_wines Proline
1

3.92

1065

3.40

1050

3.17

1185

3.45

1480

2.93

735

2.85

1450

> winetype <- tree(Class ~ Malic_acid + Ash + Alcalinity_of_ash +

Magnesium + Total_phenols + Flavanoids + Nonflavanoid_phenols +
Proanthocyanins + Color_intensity + Hue + diluted_wines + Proline,
data=mywinetype)
> summary(winetype)

Regression tree:
tree(formula = Class ~ Malic_acid + Ash + Alcalinity_of_ash +
Magnesium + Total_phenols + Flavanoids + Nonflavanoid_phenols +
Proanthocyanins + Color_intensity + Hue + diluted_wines +

Proline, data = mywinetype)

Variables actually used in tree construction:
[1] "Flavanoids"

"Color_intensity" "Proline"

Number of terminal nodes: 5

Residual mean deviance: 0.01596 = 2.761 / 173
Distribution of residuals:
Min. 1st Qu. Median

Mean 3rd Qu.

Max.

-0.98150 0.00000 0.01852 0.00000 0.02041 0.20000

> plot(winetype)
> text(winetype)
> winetype
node), split, n, deviance, yval
* denotes terminal node

1) root 178 106.3000 1.938

2) Flavanoids < 1.575 62 10.8400 2.774
4) Color_intensity < 3.825 13 0.0000 2.000 *
5) Color_intensity > 3.825 49 0.9796 2.980 *
3) Flavanoids > 1.575 116 28.9900 1.491
6) Proline < 724.5 54 0.9815 1.981 *
7) Proline > 724.5 62 3.7420 1.065
14) Color_intensity < 3.55 5 0.8000 1.800 *
15) Color_intensity > 3.55 57 0.0000 1.000 *