You can refer to any thesis for a sample.

The Thesis should have

atleast below parts:
1) Introduction?meaining of the 'topic'
2) Proofs from Quran & Tafaseer
3) Proofs from Hadees & Shuruhaat
4) Proofs from Scholars of Islam
5) Answers to questions raised by deviant sects
6) Proofs from deviants own scholas
7) Final word by the thesis writer
http://www.mediafire.com/view/3bz1izb7li6js6t/Hidayatus-Sarf+-+By+Mufti+Akmal+Sb
.pdf